FC875604
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ELAV4_XENTR (ELAV-like protein 4 OS=Xenopus tropicalis GN=elavl4 PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.202e-13 Identity = 44/111 (39.64%), Postives = 66/111 (59.46%), Query Frame = 3 Query: 288 GYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQ 620 GYGFV + +DA+ AI LN ++L K I+V+ A S+ ANL++ L + +K L FS +G I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ Sbjct: 122 GYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYGRIITS-RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 230
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ELAV4_XENLA (ELAV-like protein 4 OS=Xenopus laevis GN=elavl4 PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.202e-13 Identity = 44/111 (39.64%), Postives = 66/111 (59.46%), Query Frame = 3 Query: 288 GYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQ 620 GYGFV + +DA+ AI LN ++L K I+V+ A S+ ANL++ L + +K L FS +G I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ Sbjct: 122 GYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYGRIITS-RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 230
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: RBMS2_HUMAN (RNA-binding motif, single-stranded-interacting protein 2 OS=Homo sapiens GN=RBMS2 PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 6.794e-13 Identity = 50/165 (30.30%), Postives = 80/165 (48.48%), Query Frame = 3 Query: 132 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL 626 G + ++ Y+ L P T++ L +L G +V+ D+ TN +GYGFV+F S A A+ L ++ A Q ++ NL+I NL +DE+ L FG +++ +I+RD +G SRG GF +S E +A I NG+Y+ Sbjct: 46 GSNGNDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALK-----ASGVQAQMAKQQEQD---PTNLYISNLPLSMDEQELEGMLKPFGQVIST-RILRD-TSGTSRGVGFARMESTEKCEAIITHFNGKYI 200
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: TSAP1_MOUSE (tRNA selenocysteine 1-associated protein 1 OS=Mus musculus GN=Trnau1ap PE=1 SV=2) HSP 1 Score: 73.559 bits (179), Expect = 1.159e-12 Identity = 53/178 (29.78%), Postives = 92/178 (51.69%), Query Frame = 3 Query: 162 ATAYVGNLDPQVTEELLWELFVQAGP-VVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYG----KPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISY-DSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTK 674 A+ ++G+L+P + E + F G V++V + ++R+T + GY FVEF A+ + +N L G K ++N A+ K+ + +LF+G+L PDVD+ +LY+ F K++ DP TG S+G+GF+ + D E A E L + + +S A K ++ Sbjct: 3 ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDP-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKASR 179
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: TSAP1_DANRE (tRNA selenocysteine 1-associated protein 1 OS=Danio rerio GN=trnau1ap PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.159e-12 Identity = 44/154 (28.57%), Postives = 84/154 (54.55%), Query Frame = 3 Query: 171 YVGNLDPQVTEELLWELFVQAGP-VVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYG----KPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 617 ++GNL+P + E+ + F Q G VV + + +D++T + GYGFVE + + ++ +N L G K ++++++ K+ +LF+ +L PDVD+ +LY+ F + KI+ D + G+S+ GF+S++S A+ + G Sbjct: 5 WMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLRKVNGKPLPGATPPKRFKLSRSNYGKQGESSTFSLFVSDLTPDVDDGMLYEFFHYHFSSCCSGKIVLDAN-GHSKCCGFVSFESEREQKRALVDLQG 157
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: RBMS2_MOUSE (RNA-binding motif, single-stranded-interacting protein 2 OS=Mus musculus GN=Rbms2 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.514e-12 Identity = 49/152 (32.24%), Postives = 76/152 (50.00%), Query Frame = 3 Query: 171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL 626 Y+ L P T++ L +L G +V+ D+ TN +GYGFV+F S A A+ L ++ A Q ++ NL+I NL +DE+ L FG +++ +I+RD +G SRG GF +S E +A I NG+Y+ Sbjct: 61 YIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSSAQKAVTALK-----ASGVQAQMAKQQEQD---PTNLYISNLPLSMDEQELEGMLKPFGQVIST-RILRD-TSGASRGVGFARMESTEKCEAIITHFNGKYI 202
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: RBMS1_HUMAN (RNA-binding motif, single-stranded-interacting protein 1 OS=Homo sapiens GN=RBMS1 PE=1 SV=3) HSP 1 Score: 73.1738 bits (178), Expect = 1.514e-12 Identity = 48/152 (31.58%), Postives = 77/152 (50.66%), Query Frame = 3 Query: 171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL 626 Y+ L P T++ L +L G +V+ D+ TN +GYGFV+F S A A+ L ++ A Q ++ NL+I NL +DE+ L + FG +++ +I+RD +G SRG GF +S E +A I NG+++ Sbjct: 65 YIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALK-----ASGVQAQMAKQQEQD---PTNLYISNLPLSMDEQELENMLKPFGQVIST-RILRD-SSGTSRGVGFARMESTEKCEAVIGHFNGKFI 206
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: RBMS1_BOVIN (RNA-binding motif, single-stranded-interacting protein 1 OS=Bos taurus GN=RBMS1 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.514e-12 Identity = 48/152 (31.58%), Postives = 77/152 (50.66%), Query Frame = 3 Query: 171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL 626 Y+ L P T++ L +L G +V+ D+ TN +GYGFV+F S A A+ L ++ A Q ++ NL+I NL +DE+ L + FG +++ +I+RD +G SRG GF +S E +A I NG+++ Sbjct: 65 YIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALK-----ASGVQAQMAKQQEQD---PTNLYISNLPLSMDEQELENMLKPFGQVIST-RILRD-SSGTSRGVGFARMESTEKCEAVIGHFNGKFI 206
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: RBMS3_PONAB (RNA-binding motif, single-stranded-interacting protein 3 OS=Pongo abelii GN=RBMS3 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.977e-12 Identity = 52/168 (30.95%), Postives = 81/168 (48.21%), Query Frame = 3 Query: 123 NLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL 626 N S E+ Y+ L P T++ L +L G +V+ D+ TN +GYGFV+F S A A+ L ++ A Q ++ NL+I NL +DE+ L + FG +++ +I+RD + G SRG GF +S E + I+ NG+YL Sbjct: 47 NSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAV-----ASLKANGVQAQMAKQQEQD---PTNLYISNLPISMDEQELENMLKPFGHVIST-RILRDAN-GVSRGVGFARMESTEKCEVVIQHFNGKYL 204
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: RBMS3_HUMAN (RNA-binding motif, single-stranded-interacting protein 3 OS=Homo sapiens GN=RBMS3 PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.977e-12 Identity = 52/168 (30.95%), Postives = 81/168 (48.21%), Query Frame = 3 Query: 123 NLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL 626 N S E+ Y+ L P T++ L +L G +V+ D+ TN +GYGFV+F S A A+ L ++ A Q ++ NL+I NL +DE+ L + FG +++ +I+RD + G SRG GF +S E + I+ NG+YL Sbjct: 48 NSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAV-----ASLKANGVQAQMAKQQEQD---PTNLYISNLPISMDEQELENMLKPFGHVIST-RILRDAN-GVSRGVGFARMESTEKCEVVIQHFNGKYL 205 The following BLAST results are available for this feature:
BLAST of FC875604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 191
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875604 ID=FC875604; Name=FC875604; organism=Citrus clementina; type=EST; length=696bpback to top |