FC875604

Overview
NameFC875604
Unique NameFC875604
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ELAV4_XENTR (ELAV-like protein 4 OS=Xenopus tropicalis GN=elavl4 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.202e-13
Identity = 44/111 (39.64%), Postives = 66/111 (59.46%), Query Frame = 3
Query:  288 GYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQ 620
            GYGFV +   +DA+ AI  LN ++L  K I+V+ A     S+   ANL++  L   + +K L   FS +G I+T+ +I+ D  TG SRG GFI +D    ++ AI+ +NGQ
Sbjct:  122 GYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYGRIITS-RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 230          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ELAV4_XENLA (ELAV-like protein 4 OS=Xenopus laevis GN=elavl4 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.202e-13
Identity = 44/111 (39.64%), Postives = 66/111 (59.46%), Query Frame = 3
Query:  288 GYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQ 620
            GYGFV +   +DA+ AI  LN ++L  K I+V+ A     S+   ANL++  L   + +K L   FS +G I+T+ +I+ D  TG SRG GFI +D    ++ AI+ +NGQ
Sbjct:  122 GYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYGRIITS-RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 230          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: RBMS2_HUMAN (RNA-binding motif, single-stranded-interacting protein 2 OS=Homo sapiens GN=RBMS2 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.794e-13
Identity = 50/165 (30.30%), Postives = 80/165 (48.48%), Query Frame = 3
Query:  132 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL 626
            G +  ++      Y+  L P  T++ L +L    G +V+     D+ TN  +GYGFV+F S   A  A+  L         ++   A Q ++      NL+I NL   +DE+ L      FG +++  +I+RD  +G SRG GF   +S E  +A I   NG+Y+
Sbjct:   46 GSNGNDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALK-----ASGVQAQMAKQQEQD---PTNLYISNLPLSMDEQELEGMLKPFGQVIST-RILRD-TSGTSRGVGFARMESTEKCEAIITHFNGKYI 200          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: TSAP1_MOUSE (tRNA selenocysteine 1-associated protein 1 OS=Mus musculus GN=Trnau1ap PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.159e-12
Identity = 53/178 (29.78%), Postives = 92/178 (51.69%), Query Frame = 3
Query:  162 ATAYVGNLDPQVTEELLWELFVQAGP-VVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYG----KPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISY-DSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTK 674
            A+ ++G+L+P + E  +   F   G  V++V + ++R+T +  GY FVEF     A+  +  +N   L G    K  ++N A+  K+  +    +LF+G+L PDVD+ +LY+ F          K++ DP TG S+G+GF+ + D  E   A  E      L  + + +S A  K ++
Sbjct:    3 ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDP-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKASR 179          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: TSAP1_DANRE (tRNA selenocysteine 1-associated protein 1 OS=Danio rerio GN=trnau1ap PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.159e-12
Identity = 44/154 (28.57%), Postives = 84/154 (54.55%), Query Frame = 3
Query:  171 YVGNLDPQVTEELLWELFVQAGP-VVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYG----KPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 617
            ++GNL+P + E+ +   F Q G  VV + + +D++T  + GYGFVE   +   +  ++ +N   L G    K  ++++++  K+      +LF+ +L PDVD+ +LY+ F        + KI+ D + G+S+  GF+S++S      A+  + G
Sbjct:    5 WMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLRKVNGKPLPGATPPKRFKLSRSNYGKQGESSTFSLFVSDLTPDVDDGMLYEFFHYHFSSCCSGKIVLDAN-GHSKCCGFVSFESEREQKRALVDLQG 157          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: RBMS2_MOUSE (RNA-binding motif, single-stranded-interacting protein 2 OS=Mus musculus GN=Rbms2 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.514e-12
Identity = 49/152 (32.24%), Postives = 76/152 (50.00%), Query Frame = 3
Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL 626
            Y+  L P  T++ L +L    G +V+     D+ TN  +GYGFV+F S   A  A+  L         ++   A Q ++      NL+I NL   +DE+ L      FG +++  +I+RD  +G SRG GF   +S E  +A I   NG+Y+
Sbjct:   61 YIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSSAQKAVTALK-----ASGVQAQMAKQQEQD---PTNLYISNLPLSMDEQELEGMLKPFGQVIST-RILRD-TSGASRGVGFARMESTEKCEAIITHFNGKYI 202          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: RBMS1_HUMAN (RNA-binding motif, single-stranded-interacting protein 1 OS=Homo sapiens GN=RBMS1 PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.514e-12
Identity = 48/152 (31.58%), Postives = 77/152 (50.66%), Query Frame = 3
Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL 626
            Y+  L P  T++ L +L    G +V+     D+ TN  +GYGFV+F S   A  A+  L         ++   A Q ++      NL+I NL   +DE+ L +    FG +++  +I+RD  +G SRG GF   +S E  +A I   NG+++
Sbjct:   65 YIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALK-----ASGVQAQMAKQQEQD---PTNLYISNLPLSMDEQELENMLKPFGQVIST-RILRD-SSGTSRGVGFARMESTEKCEAVIGHFNGKFI 206          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: RBMS1_BOVIN (RNA-binding motif, single-stranded-interacting protein 1 OS=Bos taurus GN=RBMS1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.514e-12
Identity = 48/152 (31.58%), Postives = 77/152 (50.66%), Query Frame = 3
Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL 626
            Y+  L P  T++ L +L    G +V+     D+ TN  +GYGFV+F S   A  A+  L         ++   A Q ++      NL+I NL   +DE+ L +    FG +++  +I+RD  +G SRG GF   +S E  +A I   NG+++
Sbjct:   65 YIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALK-----ASGVQAQMAKQQEQD---PTNLYISNLPLSMDEQELENMLKPFGQVIST-RILRD-SSGTSRGVGFARMESTEKCEAVIGHFNGKFI 206          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: RBMS3_PONAB (RNA-binding motif, single-stranded-interacting protein 3 OS=Pongo abelii GN=RBMS3 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.977e-12
Identity = 52/168 (30.95%), Postives = 81/168 (48.21%), Query Frame = 3
Query:  123 NLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL 626
            N     S E+      Y+  L P  T++ L +L    G +V+     D+ TN  +GYGFV+F S   A  A+       L    ++   A Q ++      NL+I NL   +DE+ L +    FG +++  +I+RD + G SRG GF   +S E  +  I+  NG+YL
Sbjct:   47 NSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAV-----ASLKANGVQAQMAKQQEQD---PTNLYISNLPISMDEQELENMLKPFGHVIST-RILRDAN-GVSRGVGFARMESTEKCEVVIQHFNGKYL 204          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: RBMS3_HUMAN (RNA-binding motif, single-stranded-interacting protein 3 OS=Homo sapiens GN=RBMS3 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.977e-12
Identity = 52/168 (30.95%), Postives = 81/168 (48.21%), Query Frame = 3
Query:  123 NLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL 626
            N     S E+      Y+  L P  T++ L +L    G +V+     D+ TN  +GYGFV+F S   A  A+       L    ++   A Q ++      NL+I NL   +DE+ L +    FG +++  +I+RD + G SRG GF   +S E  +  I+  NG+YL
Sbjct:   48 NSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAV-----ASLKANGVQAQMAKQQEQD---PTNLYISNLPISMDEQELENMLKPFGHVIST-RILRDAN-GVSRGVGFARMESTEKCEVVIQHFNGKYL 205          
The following BLAST results are available for this feature:
BLAST of FC875604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
ELAV4_XENTR5.202e-1339.64ELAV-like protein 4 OS=Xenopus tropicalis GN=elavl... [more]
ELAV4_XENLA5.202e-1339.64ELAV-like protein 4 OS=Xenopus laevis GN=elavl4 PE... [more]
RBMS2_HUMAN6.794e-1330.30RNA-binding motif, single-stranded-interacting pro... [more]
TSAP1_MOUSE1.159e-1229.78tRNA selenocysteine 1-associated protein 1 OS=Mus ... [more]
TSAP1_DANRE1.159e-1228.57tRNA selenocysteine 1-associated protein 1 OS=Dani... [more]
RBMS2_MOUSE1.514e-1232.24RNA-binding motif, single-stranded-interacting pro... [more]
RBMS1_HUMAN1.514e-1231.58RNA-binding motif, single-stranded-interacting pro... [more]
RBMS1_BOVIN1.514e-1231.58RNA-binding motif, single-stranded-interacting pro... [more]
RBMS3_PONAB1.977e-1230.95RNA-binding motif, single-stranded-interacting pro... [more]
RBMS3_HUMAN1.977e-1230.95RNA-binding motif, single-stranded-interacting pro... [more]

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Properties
Property NameValue
Genbank descriptionC31405G06EF CTVClemen1 Citrus clementina cDNA clone C31405G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875604 ID=FC875604; Name=FC875604; organism=Citrus clementina; type=EST; length=696bp
GGGTAATTGGTAAATGAATAAATAAATACAAGGAACCACAGAGAGAGCGC
GGCAAGTAGAAGAAGAAGAAGTAATAACGAGTAAAAGGCATGACCACTCG
AATCGCTCCTGGAGTTGGGGCCAATTTGCTGGGCCAACACTCCGCCGAGA
GAAATCAAGATGCCACAGCTTATGTCGGCAATCTCGATCCCCAGGTTACT
GAGGAGCTACTTTGGGAGTTGTTTGTTCAAGCAGGTCCTGTTGTTAATGT
GTATGTTCCAAAAGATAGAGTGACAAACCTTCATCAAGGATACGGATTTG
TAGAGTTCCGAAGTGAGGAAGATGCTGATTATGCAATAAAGGTGCTGAAT
ATGATAAAGCTTTATGGGAAGCCGATACGTGTGAATAAGGCATCCCAAGA
CAAAAAGAGCTTAGATGTGGGGGCAAACCTTTTTATTGGAAACCTTGACC
CAGATGTGGATGAGAAACTACTATATGATACATTCAGTGCGTTTGGAGTC
ATTGTTACAAATCCCAAGATTATGCGAGATCCTGACACTGGAAATTCTCG
TGGTTTTGGTTTCATTAGCTATGATTCCTTTGAGGCATCCGATGCAGCTA
TTGAGGCAATGAATGGCCAATACCTTTGNCACCGTCAAATTACTGTCTCA
TATGCATATAAGAAAGACACTAAAGGAGAGCGCCATGGTACTCCGG
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