FC875604
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: RBMS1_RAT (RNA-binding motif, single-stranded-interacting protein 1 OS=Rattus norvegicus GN=Rbms1 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.977e-12 Identity = 47/152 (30.92%), Postives = 77/152 (50.66%), Query Frame = 3 Query: 171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL 626 Y+ L P T++ L +L G +V+ D+ TN +GYGFV+F S A A+ L ++ A Q ++ NL+I NL +DE+ L + FG +++ +++RD +G SRG GF +S E +A I NG+++ Sbjct: 65 YIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSALK-----ASGVQAQMAKQQEQD---PTNLYISNLPLSMDEQELENMLKPFGQVIST-RVLRD-SSGTSRGVGFARMESTEKCEAVIGHFNGKFI 206
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ELAV_DROVI (Protein elav OS=Drosophila virilis GN=elav PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.977e-12 Identity = 48/161 (29.81%), Postives = 83/161 (51.55%), Query Frame = 3 Query: 174 VGNLDPQVTEELLWELFVQAGPVVNVYVPKDR----VTNLHQ---------GYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 617 V L +TE+ + LF G + +V + +D+ + L+ GYGFV + +DA+ A+ VLN ++L K I+V+ A ++ GANL++ L + ++ L F+ FG I+T+ + + ++G GFI +D E + AI A+NG Sbjct: 189 VNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIK-GANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNG 348
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ELAV_DROME (Protein elav OS=Drosophila melanogaster GN=elav PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.977e-12 Identity = 48/161 (29.81%), Postives = 83/161 (51.55%), Query Frame = 3 Query: 174 VGNLDPQVTEELLWELFVQAGPVVNVYVPKDR----VTNLHQ---------GYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 617 V L +TE+ + LF G + +V + +D+ + L+ GYGFV + +DA+ A+ VLN ++L K I+V+ A ++ GANL++ L + ++ L F+ FG I+T+ + + ++G GFI +D E + AI A+NG Sbjct: 153 VNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIK-GANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNG 312
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ROA2_SAGOE (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Saguinus oedipus GN=HNRNPA2B1 PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.582e-12 Identity = 47/157 (29.94%), Postives = 79/157 (50.32%), Query Frame = 3 Query: 147 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGAN-----LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 602 E+ Q ++G L Q TEE L + Q G + + V +D + +G+GFV F S + D A+ + G+ + +A ++S GA+ LF+G + D +E L D F+ +G I T +I+ D +G RGFGF+++D + D + Sbjct: 4 EKEQFRKLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM-AARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFAEYGKIDT-IEIITDRQSGKKRGFGFVTFDDHDPVDKIV 158
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: NUCL_XENLA (Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3) HSP 1 Score: 72.4034 bits (176), Expect = 2.582e-12 Identity = 54/194 (27.84%), Postives = 89/194 (45.88%), Query Frame = 3 Query: 132 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQD------KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKK--DTKGERHG 689 G V NL TE+ L E+F +A ++ +P+++ +G+ F+EF S EDA A+ N ++ G+ IR+ + + LF+ L D E+ L + F N +I+ D DTG S+GFGF+ + + E + AA EAM + ++T+ +A K +G R G Sbjct: 405 GNKKGPEGDSKVLVVNNLSYSATEDSLREVFEKA---TSIRIPQNQ--GRAKGFAFIEFSSAEDAKDAMDSCNNTEIEGRSIRLEFSQGGGPQGGGRGGSAQSKTLFVRGLSEDTTEETLKEAFDGS----VNARIVTDRDTGASKGFGFVDFSTAEDAKAAKEAMEDGEIDGNKVTLDFAKPKGDSQRGGRGG 589
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: YOCE_SCHPO (Uncharacterized RNA-binding protein C4F6.14 OS=Schizosaccharomyces pombe GN=SPBC4F6.14 PE=1 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.372e-12 Identity = 58/190 (30.53%), Postives = 92/190 (48.42%), Query Frame = 3 Query: 153 NQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKS-LDVGAN--------------LFIGNLDPDVDE-KLLYDTFSAFGVIVTNPKIMRDPDTGNSR--GFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKD 668 N ++T +V NL Q ++ L F GP+ + V + T ++GYGFV F EDA A K L KL+G+ +R++ A+ K+S +D N L I NL + + + L FS FG + + ++ P G R GF F+ +A++ A+ ++NG + R I V +A KD Sbjct: 2 NSNSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQHLEPHFSKFGKV----REIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAVSKD 187
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: SHEP_DROYA (Protein alan shepard OS=Drosophila yakuba GN=shep PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.372e-12 Identity = 51/174 (29.31%), Postives = 79/174 (45.40%), Query Frame = 3 Query: 96 TRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 617 T + P Q E+ Y+ L T++ L + Q G +++ D+ TN +GYGFV+F A+ A+K L GK ++ A Q ++ NL+I NL P E L S +G +V+ +I+RD NS+G GF +S E + I+ NG Sbjct: 209 TNMGPNGTVQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVK-----GLQGKGVQAQMAKQQEQD---PTNLYIANLPPHFKETDLEAMLSKYGQVVST-RILRDQQM-NSKGVGFARMESREKCEQIIQMFNG 372
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: SHEP_DROSE (Protein alan shepard OS=Drosophila sechellia GN=shep PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.372e-12 Identity = 51/174 (29.31%), Postives = 79/174 (45.40%), Query Frame = 3 Query: 96 TRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 617 T + P Q E+ Y+ L T++ L + Q G +++ D+ TN +GYGFV+F A+ A+K L GK ++ A Q ++ NL+I NL P E L S +G +V+ +I+RD NS+G GF +S E + I+ NG Sbjct: 209 TNMGPNGTVQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVK-----GLQGKGVQAQMAKQQEQD---PTNLYIANLPPHFKETDLEAMLSKYGQVVST-RILRDQQM-NSKGVGFARMESREKCEQIIQMFNG 372
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: SHEP_DROME (Protein alan shepard OS=Drosophila melanogaster GN=shep PE=1 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.372e-12 Identity = 51/174 (29.31%), Postives = 79/174 (45.40%), Query Frame = 3 Query: 96 TRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 617 T + P Q E+ Y+ L T++ L + Q G +++ D+ TN +GYGFV+F A+ A+K L GK ++ A Q ++ NL+I NL P E L S +G +V+ +I+RD NS+G GF +S E + I+ NG Sbjct: 209 TNMGPNGTVQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVK-----GLQGKGVQAQMAKQQEQD---PTNLYIANLPPHFKETDLEAMLSKYGQVVST-RILRDQQM-NSKGVGFARMESREKCEQIIQMFNG 372
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: SHEP_DROER (Protein alan shepard OS=Drosophila erecta GN=shep PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.372e-12 Identity = 51/174 (29.31%), Postives = 79/174 (45.40%), Query Frame = 3 Query: 96 TRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 617 T + P Q E+ Y+ L T++ L + Q G +++ D+ TN +GYGFV+F A+ A+K L GK ++ A Q ++ NL+I NL P E L S +G +V+ +I+RD NS+G GF +S E + I+ NG Sbjct: 209 TNMGPNGTVQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVK-----GLQGKGVQAQMAKQQEQD---PTNLYIANLPPHFKETDLEAMLSKYGQVVST-RILRDQQM-NSKGVGFARMESREKCEQIIQMFNG 372 The following BLAST results are available for this feature:
BLAST of FC875604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 191
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875604 ID=FC875604; Name=FC875604; organism=Citrus clementina; type=EST; length=696bpback to top |