FC875604

Overview
NameFC875604
Unique NameFC875604
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: RBMS1_RAT (RNA-binding motif, single-stranded-interacting protein 1 OS=Rattus norvegicus GN=Rbms1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.977e-12
Identity = 47/152 (30.92%), Postives = 77/152 (50.66%), Query Frame = 3
Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL 626
            Y+  L P  T++ L +L    G +V+     D+ TN  +GYGFV+F S   A  A+  L         ++   A Q ++      NL+I NL   +DE+ L +    FG +++  +++RD  +G SRG GF   +S E  +A I   NG+++
Sbjct:   65 YIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSALK-----ASGVQAQMAKQQEQD---PTNLYISNLPLSMDEQELENMLKPFGQVIST-RVLRD-SSGTSRGVGFARMESTEKCEAVIGHFNGKFI 206          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ELAV_DROVI (Protein elav OS=Drosophila virilis GN=elav PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.977e-12
Identity = 48/161 (29.81%), Postives = 83/161 (51.55%), Query Frame = 3
Query:  174 VGNLDPQVTEELLWELFVQAGPVVNVYVPKDR----VTNLHQ---------GYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 617
            V  L   +TE+ +  LF   G + +V + +D+    +  L+          GYGFV +   +DA+ A+ VLN ++L  K I+V+ A     ++  GANL++  L   + ++ L   F+ FG I+T+  +    +   ++G GFI +D  E +  AI A+NG
Sbjct:  189 VNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIK-GANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNG 348          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ELAV_DROME (Protein elav OS=Drosophila melanogaster GN=elav PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.977e-12
Identity = 48/161 (29.81%), Postives = 83/161 (51.55%), Query Frame = 3
Query:  174 VGNLDPQVTEELLWELFVQAGPVVNVYVPKDR----VTNLHQ---------GYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 617
            V  L   +TE+ +  LF   G + +V + +D+    +  L+          GYGFV +   +DA+ A+ VLN ++L  K I+V+ A     ++  GANL++  L   + ++ L   F+ FG I+T+  +    +   ++G GFI +D  E +  AI A+NG
Sbjct:  153 VNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIK-GANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNG 312          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ROA2_SAGOE (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Saguinus oedipus GN=HNRNPA2B1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.582e-12
Identity = 47/157 (29.94%), Postives = 79/157 (50.32%), Query Frame = 3
Query:  147 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGAN-----LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 602
            E+ Q    ++G L  Q TEE L   + Q G + +  V +D  +   +G+GFV F S  + D A+       + G+ +   +A   ++S   GA+     LF+G +  D +E  L D F+ +G I T  +I+ D  +G  RGFGF+++D  +  D  +
Sbjct:    4 EKEQFRKLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM-AARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFAEYGKIDT-IEIITDRQSGKKRGFGFVTFDDHDPVDKIV 158          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: NUCL_XENLA (Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 2.582e-12
Identity = 54/194 (27.84%), Postives = 89/194 (45.88%), Query Frame = 3
Query:  132 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQD------KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKK--DTKGERHG 689
            G             V NL    TE+ L E+F +A    ++ +P+++     +G+ F+EF S EDA  A+   N  ++ G+ IR+  +         +        LF+  L  D  E+ L + F        N +I+ D DTG S+GFGF+ + + E + AA EAM    +   ++T+ +A  K    +G R G
Sbjct:  405 GNKKGPEGDSKVLVVNNLSYSATEDSLREVFEKA---TSIRIPQNQ--GRAKGFAFIEFSSAEDAKDAMDSCNNTEIEGRSIRLEFSQGGGPQGGGRGGSAQSKTLFVRGLSEDTTEETLKEAFDGS----VNARIVTDRDTGASKGFGFVDFSTAEDAKAAKEAMEDGEIDGNKVTLDFAKPKGDSQRGGRGG 589          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: YOCE_SCHPO (Uncharacterized RNA-binding protein C4F6.14 OS=Schizosaccharomyces pombe GN=SPBC4F6.14 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.372e-12
Identity = 58/190 (30.53%), Postives = 92/190 (48.42%), Query Frame = 3
Query:  153 NQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKS-LDVGAN--------------LFIGNLDPDVDE-KLLYDTFSAFGVIVTNPKIMRDPDTGNSR--GFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKD 668
            N ++T +V NL  Q  ++ L   F   GP+ +  V  +  T  ++GYGFV F   EDA  A K L   KL+G+ +R++ A+  K+S +D   N              L I NL   + + + L   FS FG +    + ++ P  G  R  GF F+     +A++ A+ ++NG  +  R I V +A  KD
Sbjct:    2 NSNSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQHLEPHFSKFGKV----REIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAVSKD 187          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: SHEP_DROYA (Protein alan shepard OS=Drosophila yakuba GN=shep PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.372e-12
Identity = 51/174 (29.31%), Postives = 79/174 (45.40%), Query Frame = 3
Query:   96 TRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 617
            T + P        Q   E+      Y+  L    T++ L  +  Q G +++     D+ TN  +GYGFV+F     A+ A+K      L GK ++   A Q ++      NL+I NL P   E  L    S +G +V+  +I+RD    NS+G GF   +S E  +  I+  NG
Sbjct:  209 TNMGPNGTVQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVK-----GLQGKGVQAQMAKQQEQD---PTNLYIANLPPHFKETDLEAMLSKYGQVVST-RILRDQQM-NSKGVGFARMESREKCEQIIQMFNG 372          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: SHEP_DROSE (Protein alan shepard OS=Drosophila sechellia GN=shep PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.372e-12
Identity = 51/174 (29.31%), Postives = 79/174 (45.40%), Query Frame = 3
Query:   96 TRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 617
            T + P        Q   E+      Y+  L    T++ L  +  Q G +++     D+ TN  +GYGFV+F     A+ A+K      L GK ++   A Q ++      NL+I NL P   E  L    S +G +V+  +I+RD    NS+G GF   +S E  +  I+  NG
Sbjct:  209 TNMGPNGTVQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVK-----GLQGKGVQAQMAKQQEQD---PTNLYIANLPPHFKETDLEAMLSKYGQVVST-RILRDQQM-NSKGVGFARMESREKCEQIIQMFNG 372          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: SHEP_DROME (Protein alan shepard OS=Drosophila melanogaster GN=shep PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.372e-12
Identity = 51/174 (29.31%), Postives = 79/174 (45.40%), Query Frame = 3
Query:   96 TRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 617
            T + P        Q   E+      Y+  L    T++ L  +  Q G +++     D+ TN  +GYGFV+F     A+ A+K      L GK ++   A Q ++      NL+I NL P   E  L    S +G +V+  +I+RD    NS+G GF   +S E  +  I+  NG
Sbjct:  209 TNMGPNGTVQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVK-----GLQGKGVQAQMAKQQEQD---PTNLYIANLPPHFKETDLEAMLSKYGQVVST-RILRDQQM-NSKGVGFARMESREKCEQIIQMFNG 372          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: SHEP_DROER (Protein alan shepard OS=Drosophila erecta GN=shep PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.372e-12
Identity = 51/174 (29.31%), Postives = 79/174 (45.40%), Query Frame = 3
Query:   96 TRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 617
            T + P        Q   E+      Y+  L    T++ L  +  Q G +++     D+ TN  +GYGFV+F     A+ A+K      L GK ++   A Q ++      NL+I NL P   E  L    S +G +V+  +I+RD    NS+G GF   +S E  +  I+  NG
Sbjct:  209 TNMGPNGTVQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVK-----GLQGKGVQAQMAKQQEQD---PTNLYIANLPPHFKETDLEAMLSKYGQVVST-RILRDQQM-NSKGVGFARMESREKCEQIIQMFNG 372          
The following BLAST results are available for this feature:
BLAST of FC875604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
RBMS1_RAT1.977e-1230.92RNA-binding motif, single-stranded-interacting pro... [more]
ELAV_DROVI1.977e-1229.81Protein elav OS=Drosophila virilis GN=elav PE=3 SV... [more]
ELAV_DROME1.977e-1229.81Protein elav OS=Drosophila melanogaster GN=elav PE... [more]
ROA2_SAGOE2.582e-1229.94Heterogeneous nuclear ribonucleoproteins A2/B1 OS=... [more]
NUCL_XENLA2.582e-1227.84Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3[more]
YOCE_SCHPO3.372e-1230.53Uncharacterized RNA-binding protein C4F6.14 OS=Sch... [more]
SHEP_DROYA3.372e-1229.31Protein alan shepard OS=Drosophila yakuba GN=shep ... [more]
SHEP_DROSE3.372e-1229.31Protein alan shepard OS=Drosophila sechellia GN=sh... [more]
SHEP_DROME3.372e-1229.31Protein alan shepard OS=Drosophila melanogaster GN... [more]
SHEP_DROER3.372e-1229.31Protein alan shepard OS=Drosophila erecta GN=shep ... [more]

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Properties
Property NameValue
Genbank descriptionC31405G06EF CTVClemen1 Citrus clementina cDNA clone C31405G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875604 ID=FC875604; Name=FC875604; organism=Citrus clementina; type=EST; length=696bp
GGGTAATTGGTAAATGAATAAATAAATACAAGGAACCACAGAGAGAGCGC
GGCAAGTAGAAGAAGAAGAAGTAATAACGAGTAAAAGGCATGACCACTCG
AATCGCTCCTGGAGTTGGGGCCAATTTGCTGGGCCAACACTCCGCCGAGA
GAAATCAAGATGCCACAGCTTATGTCGGCAATCTCGATCCCCAGGTTACT
GAGGAGCTACTTTGGGAGTTGTTTGTTCAAGCAGGTCCTGTTGTTAATGT
GTATGTTCCAAAAGATAGAGTGACAAACCTTCATCAAGGATACGGATTTG
TAGAGTTCCGAAGTGAGGAAGATGCTGATTATGCAATAAAGGTGCTGAAT
ATGATAAAGCTTTATGGGAAGCCGATACGTGTGAATAAGGCATCCCAAGA
CAAAAAGAGCTTAGATGTGGGGGCAAACCTTTTTATTGGAAACCTTGACC
CAGATGTGGATGAGAAACTACTATATGATACATTCAGTGCGTTTGGAGTC
ATTGTTACAAATCCCAAGATTATGCGAGATCCTGACACTGGAAATTCTCG
TGGTTTTGGTTTCATTAGCTATGATTCCTTTGAGGCATCCGATGCAGCTA
TTGAGGCAATGAATGGCCAATACCTTTGNCACCGTCAAATTACTGTCTCA
TATGCATATAAGAAAGACACTAAAGGAGAGCGCCATGGTACTCCGG
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