FC875604

Overview
NameFC875604
Unique NameFC875604
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ROA3_RAT (Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus GN=Hnrnpa3 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.512e-12
Identity = 46/162 (28.40%), Postives = 79/162 (48.77%), Query Frame = 3
Query:  132 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANL-----FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 602
            G    E  Q    ++G L  + T++ L E F + G + +  V +D  T   +G+GFV +   E+ D A+      K+ G+ +   +A   + S+  GA+L     F+G +  D +E  L D F  +G I T  ++M D  +G  RGF F+++D  +  D  +
Sbjct:   25 GHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM-CARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIET-IEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ROA3_MOUSE (Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus GN=Hnrnpa3 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.512e-12
Identity = 46/162 (28.40%), Postives = 79/162 (48.77%), Query Frame = 3
Query:  132 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANL-----FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 602
            G    E  Q    ++G L  + T++ L E F + G + +  V +D  T   +G+GFV +   E+ D A+      K+ G+ +   +A   + S+  GA+L     F+G +  D +E  L D F  +G I T  ++M D  +G  RGF F+++D  +  D  +
Sbjct:   25 GHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM-CARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIET-IEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ROA3_HUMAN (Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens GN=HNRNPA3 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.512e-12
Identity = 46/162 (28.40%), Postives = 79/162 (48.77%), Query Frame = 3
Query:  132 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANL-----FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 602
            G    E  Q    ++G L  + T++ L E F + G + +  V +D  T   +G+GFV +   E+ D A+      K+ G+ +   +A   + S+  GA+L     F+G +  D +E  L D F  +G I T  ++M D  +G  RGF F+++D  +  D  +
Sbjct:   25 GHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM-CARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIET-IEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ROA2_RAT (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Rattus norvegicus GN=Hnrnpa2b1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.512e-12
Identity = 47/160 (29.38%), Postives = 79/160 (49.38%), Query Frame = 3
Query:  129 LGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGAN-----LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASD 593
            L +   E+ Q    ++G L  + TEE L   + Q G + +  V +D  +   +G+GFV F S  + D A+       + G+ +   +A   ++S   GA+     LF+G +  D +E  L D F  +G I T  +I+ D  +G  RGFGF+++D  +  D
Sbjct:   10 LERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM-AARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDT-IEIITDRQSGKKRGFGFVTFDDHDPVD 167          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ROA2_BOVIN (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Bos taurus GN=HNRNPA2B1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.512e-12
Identity = 46/157 (29.30%), Postives = 78/157 (49.68%), Query Frame = 3
Query:  147 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGAN-----LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 602
            E+ Q    ++G L  + TEE L   + Q G + +  V +D  +   +G+GFV F S  + D A+       + G+ +   +A   ++S   GA+     LF+G +  D +E  L D F  +G I T  +I+ D  +G  RGFGF+++D  +  D  +
Sbjct:    4 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM-AARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDT-IEIITDRQSGKKRGFGFVTFDDHDPVDKIV 158          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: CELF5_XENTR (CUG-BP- and ETR-3-like factor 5 OS=Xenopus tropicalis GN=brunol5 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.512e-12
Identity = 48/152 (31.58%), Postives = 78/152 (51.32%), Query Frame = 3
Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKL---YGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 617
            +VG +   + E+ L  LF Q G +  + V KDR T +H+G  F+ + + + A  A   L+  K      +PI+V  A  + +  D    LF+G L     E+ +   F AFG I     ++R PD G+S+G  F+ + S   + AAI+A++G
Sbjct:   50 FVGQIPRNLEEKDLKPLFEQFGKIYELTVLKDRYTGMHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESRGGD--RKLFVGMLSKQQSEEEVTSMFQAFGSI-EECSVLRGPD-GSSKGCAFVKFSSHAEAQAAIQALHG 197          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: TSAP1_PONAB (tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii GN=TRNAU1AP PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.281e-11
Identity = 51/178 (28.65%), Postives = 90/178 (50.56%), Query Frame = 3
Query:  162 ATAYVGNLDPQVTEELLWELFVQAGP-VVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYG----KPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISY-DSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTK 674
            A+ ++G+L+P + E  +   F   G  V++V + ++R+T +  GY FVEF     A+  +  +N   L G    K  ++N  +  K+  +    +LF+G+L PDVD+ +LY+ F          K++ D  TG S+G+GF+ + D  E   A  E      L  + + +S A  K ++
Sbjct:    3 ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYVTYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASR 179          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.674e-11
Identity = 39/88 (44.32%), Postives = 55/88 (62.50%), Query Frame = 3
Query:  414 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTKG 677
            DV    F+G L    D++ L + FS +G ++ + KI+ D +TG SRGFGF+++ S EA   AIEAMNGQ L  R ITV+ A  + + G
Sbjct:    3 DVEYRCFVGGLRWATDDQSLQNAFSKYGDVIDS-KIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQSRRSDG 89          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: SHEP_DROVI (Protein alan shepard OS=Drosophila virilis GN=shep PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.186e-11
Identity = 50/174 (28.74%), Postives = 79/174 (45.40%), Query Frame = 3
Query:   96 TRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 617
            T + P   A    Q   E+      Y+  L    T++ L  +  Q G +++     D+ TN  +GYGFV+F     A+ A+K      L  K ++   A Q ++      NL+I NL P   E  L    + +G +V+  +I+RD    NS+G GF   +S E  +  I+  NG
Sbjct:  221 TTMGPNGTAQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLINMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAYAEGAVK-----GLQAKGVQAQMAKQQEQD---PTNLYIANLPPHFKETDLEAMLAKYGQVVST-RILRDQQM-NSKGVGFARMESREKCEQIIQMFNG 384          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: SHEP_DROGR (Protein alan shepard OS=Drosophila grimshawi GN=shep PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.186e-11
Identity = 50/174 (28.74%), Postives = 79/174 (45.40%), Query Frame = 3
Query:   96 TRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 617
            T + P   A    Q   E+      Y+  L    T++ L  +  Q G +++     D+ TN  +GYGFV+F     A+ A+K      L  K ++   A Q ++      NL+I NL P   E  L    + +G +V+  +I+RD    NS+G GF   +S E  +  I+  NG
Sbjct:  235 TTMGPNGTAQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLINMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAYAEGAVK-----GLQAKGVQAQMAKQQEQD---PTNLYIANLPPHFKETDLEAMLAKYGQVVST-RILRDQQM-NSKGVGFARMESREKCEQIIQMFNG 398          
The following BLAST results are available for this feature:
BLAST of FC875604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
ROA3_RAT7.512e-1228.40Heterogeneous nuclear ribonucleoprotein A3 OS=Ratt... [more]
ROA3_MOUSE7.512e-1228.40Heterogeneous nuclear ribonucleoprotein A3 OS=Mus ... [more]
ROA3_HUMAN7.512e-1228.40Heterogeneous nuclear ribonucleoprotein A3 OS=Homo... [more]
ROA2_RAT7.512e-1229.38Heterogeneous nuclear ribonucleoproteins A2/B1 OS=... [more]
ROA2_BOVIN7.512e-1229.30Heterogeneous nuclear ribonucleoproteins A2/B1 OS=... [more]
CELF5_XENTR7.512e-1231.58CUG-BP- and ETR-3-like factor 5 OS=Xenopus tropica... [more]
TSAP1_PONAB1.281e-1128.65tRNA selenocysteine 1-associated protein 1 OS=Pong... [more]
GRP_HORVU1.674e-1144.32Glycine-rich RNA-binding protein blt801 OS=Hordeum... [more]
SHEP_DROVI2.186e-1128.74Protein alan shepard OS=Drosophila virilis GN=shep... [more]
SHEP_DROGR2.186e-1128.74Protein alan shepard OS=Drosophila grimshawi GN=sh... [more]

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Properties
Property NameValue
Genbank descriptionC31405G06EF CTVClemen1 Citrus clementina cDNA clone C31405G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875604 ID=FC875604; Name=FC875604; organism=Citrus clementina; type=EST; length=696bp
GGGTAATTGGTAAATGAATAAATAAATACAAGGAACCACAGAGAGAGCGC
GGCAAGTAGAAGAAGAAGAAGTAATAACGAGTAAAAGGCATGACCACTCG
AATCGCTCCTGGAGTTGGGGCCAATTTGCTGGGCCAACACTCCGCCGAGA
GAAATCAAGATGCCACAGCTTATGTCGGCAATCTCGATCCCCAGGTTACT
GAGGAGCTACTTTGGGAGTTGTTTGTTCAAGCAGGTCCTGTTGTTAATGT
GTATGTTCCAAAAGATAGAGTGACAAACCTTCATCAAGGATACGGATTTG
TAGAGTTCCGAAGTGAGGAAGATGCTGATTATGCAATAAAGGTGCTGAAT
ATGATAAAGCTTTATGGGAAGCCGATACGTGTGAATAAGGCATCCCAAGA
CAAAAAGAGCTTAGATGTGGGGGCAAACCTTTTTATTGGAAACCTTGACC
CAGATGTGGATGAGAAACTACTATATGATACATTCAGTGCGTTTGGAGTC
ATTGTTACAAATCCCAAGATTATGCGAGATCCTGACACTGGAAATTCTCG
TGGTTTTGGTTTCATTAGCTATGATTCCTTTGAGGCATCCGATGCAGCTA
TTGAGGCAATGAATGGCCAATACCTTTGNCACCGTCAAATTACTGTCTCA
TATGCATATAAGAAAGACACTAAAGGAGAGCGCCATGGTACTCCGG
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