FC875604
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ROA3_RAT (Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus GN=Hnrnpa3 PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.512e-12 Identity = 46/162 (28.40%), Postives = 79/162 (48.77%), Query Frame = 3 Query: 132 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANL-----FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 602 G E Q ++G L + T++ L E F + G + + V +D T +G+GFV + E+ D A+ K+ G+ + +A + S+ GA+L F+G + D +E L D F +G I T ++M D +G RGF F+++D + D + Sbjct: 25 GHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM-CARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIET-IEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ROA3_MOUSE (Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus GN=Hnrnpa3 PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.512e-12 Identity = 46/162 (28.40%), Postives = 79/162 (48.77%), Query Frame = 3 Query: 132 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANL-----FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 602 G E Q ++G L + T++ L E F + G + + V +D T +G+GFV + E+ D A+ K+ G+ + +A + S+ GA+L F+G + D +E L D F +G I T ++M D +G RGF F+++D + D + Sbjct: 25 GHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM-CARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIET-IEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ROA3_HUMAN (Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens GN=HNRNPA3 PE=1 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 7.512e-12 Identity = 46/162 (28.40%), Postives = 79/162 (48.77%), Query Frame = 3 Query: 132 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANL-----FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 602 G E Q ++G L + T++ L E F + G + + V +D T +G+GFV + E+ D A+ K+ G+ + +A + S+ GA+L F+G + D +E L D F +G I T ++M D +G RGF F+++D + D + Sbjct: 25 GHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM-CARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIET-IEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ROA2_RAT (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Rattus norvegicus GN=Hnrnpa2b1 PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.512e-12 Identity = 47/160 (29.38%), Postives = 79/160 (49.38%), Query Frame = 3 Query: 129 LGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGAN-----LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASD 593 L + E+ Q ++G L + TEE L + Q G + + V +D + +G+GFV F S + D A+ + G+ + +A ++S GA+ LF+G + D +E L D F +G I T +I+ D +G RGFGF+++D + D Sbjct: 10 LERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM-AARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDT-IEIITDRQSGKKRGFGFVTFDDHDPVD 167
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ROA2_BOVIN (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Bos taurus GN=HNRNPA2B1 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.512e-12 Identity = 46/157 (29.30%), Postives = 78/157 (49.68%), Query Frame = 3 Query: 147 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGAN-----LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 602 E+ Q ++G L + TEE L + Q G + + V +D + +G+GFV F S + D A+ + G+ + +A ++S GA+ LF+G + D +E L D F +G I T +I+ D +G RGFGF+++D + D + Sbjct: 4 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM-AARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDT-IEIITDRQSGKKRGFGFVTFDDHDPVDKIV 158
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: CELF5_XENTR (CUG-BP- and ETR-3-like factor 5 OS=Xenopus tropicalis GN=brunol5 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.512e-12 Identity = 48/152 (31.58%), Postives = 78/152 (51.32%), Query Frame = 3 Query: 171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKL---YGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 617 +VG + + E+ L LF Q G + + V KDR T +H+G F+ + + + A A L+ K +PI+V A + + D LF+G L E+ + F AFG I ++R PD G+S+G F+ + S + AAI+A++G Sbjct: 50 FVGQIPRNLEEKDLKPLFEQFGKIYELTVLKDRYTGMHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESRGGD--RKLFVGMLSKQQSEEEVTSMFQAFGSI-EECSVLRGPD-GSSKGCAFVKFSSHAEAQAAIQALHG 197
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: TSAP1_PONAB (tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii GN=TRNAU1AP PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.281e-11 Identity = 51/178 (28.65%), Postives = 90/178 (50.56%), Query Frame = 3 Query: 162 ATAYVGNLDPQVTEELLWELFVQAGP-VVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYG----KPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISY-DSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTK 674 A+ ++G+L+P + E + F G V++V + ++R+T + GY FVEF A+ + +N L G K ++N + K+ + +LF+G+L PDVD+ +LY+ F K++ D TG S+G+GF+ + D E A E L + + +S A K ++ Sbjct: 3 ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYVTYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASR 179
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.674e-11 Identity = 39/88 (44.32%), Postives = 55/88 (62.50%), Query Frame = 3 Query: 414 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTKG 677 DV F+G L D++ L + FS +G ++ + KI+ D +TG SRGFGF+++ S EA AIEAMNGQ L R ITV+ A + + G Sbjct: 3 DVEYRCFVGGLRWATDDQSLQNAFSKYGDVIDS-KIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQSRRSDG 89
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: SHEP_DROVI (Protein alan shepard OS=Drosophila virilis GN=shep PE=3 SV=2) HSP 1 Score: 69.3218 bits (168), Expect = 2.186e-11 Identity = 50/174 (28.74%), Postives = 79/174 (45.40%), Query Frame = 3 Query: 96 TRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 617 T + P A Q E+ Y+ L T++ L + Q G +++ D+ TN +GYGFV+F A+ A+K L K ++ A Q ++ NL+I NL P E L + +G +V+ +I+RD NS+G GF +S E + I+ NG Sbjct: 221 TTMGPNGTAQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLINMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAYAEGAVK-----GLQAKGVQAQMAKQQEQD---PTNLYIANLPPHFKETDLEAMLAKYGQVVST-RILRDQQM-NSKGVGFARMESREKCEQIIQMFNG 384
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: SHEP_DROGR (Protein alan shepard OS=Drosophila grimshawi GN=shep PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.186e-11 Identity = 50/174 (28.74%), Postives = 79/174 (45.40%), Query Frame = 3 Query: 96 TRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 617 T + P A Q E+ Y+ L T++ L + Q G +++ D+ TN +GYGFV+F A+ A+K L K ++ A Q ++ NL+I NL P E L + +G +V+ +I+RD NS+G GF +S E + I+ NG Sbjct: 235 TTMGPNGTAQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLINMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAYAEGAVK-----GLQAKGVQAQMAKQQEQD---PTNLYIANLPPHFKETDLEAMLAKYGQVVST-RILRDQQM-NSKGVGFARMESREKCEQIIQMFNG 398 The following BLAST results are available for this feature:
BLAST of FC875604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 191
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875604 ID=FC875604; Name=FC875604; organism=Citrus clementina; type=EST; length=696bpback to top |