FC875604

Overview
NameFC875604
Unique NameFC875604
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: CELF4_MACFA (CUG-BP- and ETR-3-like factor 4 OS=Macaca fascicularis GN=BRUNOL4 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.186e-11
Identity = 49/152 (32.24%), Postives = 75/152 (49.34%), Query Frame = 3
Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKL---YGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 617
            ++G +   + E+ L  LF + G +  + V KDR T +H+G  F+ +   E A  A   L+  K      +PI+V  A  + +       LF+G L+    E  +   F AFG I     I+R PD GNS+G  F+ Y S   + AAI A++G
Sbjct:   57 FIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRG---DRKLFVGMLNKQQSEDDVRRLFEAFGNI-EECTILRGPD-GNSKGCAFVKYSSHAEAQAAINALHG 203          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ROA1_SCHAM (Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog OS=Schistocerca americana GN=HNRNP PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.855e-11
Identity = 53/179 (29.61%), Postives = 88/179 (49.16%), Query Frame = 3
Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA--SQDKKSLDVGA---NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKK-DTKGERHG 689
            ++G LD + T+E L + F Q G +V+V V KD  T   +G+GF+ +      D A +     K+ G+ +   +A    +    + GA    LF+G +  +++E  L D F  +G +V +  I+ D +T   RGF F+ +D ++  D    + N Q +  + I V  A  K D  G R G
Sbjct:   20 FIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDA-QNARPHKVDGRVVEPKRAVPRTEIGRPEAGATVKKLFVGGIKEEMEENDLRDYFKQYGTVV-SAAIVVDKETRKKRGFAFVEFDDYDPVDKICLSRNHQ-IRGKHIDVKKALPKGDAPGGRGG 195          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PES4_YEAST (Protein PES4 OS=Saccharomyces cerevisiae GN=PES4 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.855e-11
Identity = 48/182 (26.37%), Postives = 89/182 (48.90%), Query Frame = 3
Query:  141 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKK-SLDVGANLFIGNL---DPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTK 674
            S E  +    ++G+L   VTEE L  +F +    V+  V  D VT    G+G++ F  +E+A+ A++ LN  K+ GK IR+  + ++     + G N+F  NL   +P +  ++ YDTFS +G I++     R       +  GF+ ++  + +   I+  N      ++I     + K+ +
Sbjct:   84 SFESKKLVPLFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEELNYTKVNGKEIRIMPSLRNTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKILSCKLDSR-------KDIGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVR 258          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: HNRDL_MOUSE (Heterogeneous nuclear ribonucleoprotein D-like OS=Mus musculus GN=Hnrpdl PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.855e-11
Identity = 50/158 (31.65%), Postives = 78/158 (49.37%), Query Frame = 3
Query:  141 SAERNQ--DATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 608
            +A +NQ  D   ++G L    +++ L E   + G VV+  +  D VT   +G+GFV F+     D  ++ L   KL GK I   +A +  K  +    +F+G L PD  E+ + + F AFG I  N ++  D  T   RGF FI+Y   E     +E+
Sbjct:   20 NASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLE-LKEHKLDGKLIDPKRA-KALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEI-ENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 174          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: HNRDL_HUMAN (Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens GN=HNRPDL PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 2.855e-11
Identity = 50/158 (31.65%), Postives = 78/158 (49.37%), Query Frame = 3
Query:  141 SAERNQ--DATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 608
            +A +NQ  D   ++G L    +++ L E   + G VV+  +  D VT   +G+GFV F+     D  ++ L   KL GK I   +A +  K  +    +F+G L PD  E+ + + F AFG I  N ++  D  T   RGF FI+Y   E     +E+
Sbjct:  139 NASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLE-LKEHKLDGKLIDPKRA-KALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEI-ENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 293          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: GAR2_SCHPO (Protein gar2 OS=Schizosaccharomyces pombe GN=gar2 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.855e-11
Identity = 47/199 (23.62%), Postives = 94/199 (47.24%), Query Frame = 3
Query:  141 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS---------QDKKSLDVGANL-------FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTKGERHG 689
            S + N+  T +VG L   V ++ L + F + G +V   V  D  +   +GYG+V+F + E A  A+      ++ G+ + ++ ++           +++ + G  L       F+GNL  +  E  L   F   G I  + ++  DP +G  +GFG++++   +++   +E MNG ++  R   + ++  +   G R G
Sbjct:  256 SQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDI-QSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-MNGHFIAGRPCRLDFSTPRTGGGSRGG 452          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ROA1_RAT (Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus GN=Hnrnpa1 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11
Identity = 46/157 (29.30%), Postives = 77/157 (49.04%), Query Frame = 3
Query:  147 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANL-----FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 602
            E  Q    ++G L  + T+E L   F Q G + +  V +D  T   +G+GFV + + E+ D A+      K+ G+ +   +A   + S   GA+L     F+G +  D +E  L D F  +G I    +IM D  +G  RGF F+++D  ++ D  +
Sbjct:    9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV-IEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ROA1_PANTR (Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes GN=HNRNPA1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11
Identity = 46/157 (29.30%), Postives = 77/157 (49.04%), Query Frame = 3
Query:  147 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANL-----FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 602
            E  Q    ++G L  + T+E L   F Q G + +  V +D  T   +G+GFV + + E+ D A+      K+ G+ +   +A   + S   GA+L     F+G +  D +E  L D F  +G I    +IM D  +G  RGF F+++D  ++ D  +
Sbjct:    9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV-IEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ROA1_MOUSE (Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus GN=Hnrnpa1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11
Identity = 46/157 (29.30%), Postives = 77/157 (49.04%), Query Frame = 3
Query:  147 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANL-----FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 602
            E  Q    ++G L  + T+E L   F Q G + +  V +D  T   +G+GFV + + E+ D A+      K+ G+ +   +A   + S   GA+L     F+G +  D +E  L D F  +G I    +IM D  +G  RGF F+++D  ++ D  +
Sbjct:    9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV-IEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ROA1_HUMAN (Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens GN=HNRNPA1 PE=1 SV=5)

HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11
Identity = 46/157 (29.30%), Postives = 77/157 (49.04%), Query Frame = 3
Query:  147 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANL-----FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 602
            E  Q    ++G L  + T+E L   F Q G + +  V +D  T   +G+GFV + + E+ D A+      K+ G+ +   +A   + S   GA+L     F+G +  D +E  L D F  +G I    +IM D  +G  RGF F+++D  ++ D  +
Sbjct:    9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV-IEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163          
The following BLAST results are available for this feature:
BLAST of FC875604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
CELF4_MACFA2.186e-1132.24CUG-BP- and ETR-3-like factor 4 OS=Macaca fascicul... [more]
ROA1_SCHAM2.855e-1129.61Heterogeneous nuclear ribonucleoprotein A1, A2/B1 ... [more]
PES4_YEAST2.855e-1126.37Protein PES4 OS=Saccharomyces cerevisiae GN=PES4 P... [more]
HNRDL_MOUSE2.855e-1131.65Heterogeneous nuclear ribonucleoprotein D-like OS=... [more]
HNRDL_HUMAN2.855e-1131.65Heterogeneous nuclear ribonucleoprotein D-like OS=... [more]
GAR2_SCHPO2.855e-1123.62Protein gar2 OS=Schizosaccharomyces pombe GN=gar2 ... [more]
ROA1_RAT3.728e-1129.30Heterogeneous nuclear ribonucleoprotein A1 OS=Ratt... [more]
ROA1_PANTR3.728e-1129.30Heterogeneous nuclear ribonucleoprotein A1 OS=Pan ... [more]
ROA1_MOUSE3.728e-1129.30Heterogeneous nuclear ribonucleoprotein A1 OS=Mus ... [more]
ROA1_HUMAN3.728e-1129.30Heterogeneous nuclear ribonucleoprotein A1 OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionC31405G06EF CTVClemen1 Citrus clementina cDNA clone C31405G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875604 ID=FC875604; Name=FC875604; organism=Citrus clementina; type=EST; length=696bp
GGGTAATTGGTAAATGAATAAATAAATACAAGGAACCACAGAGAGAGCGC
GGCAAGTAGAAGAAGAAGAAGTAATAACGAGTAAAAGGCATGACCACTCG
AATCGCTCCTGGAGTTGGGGCCAATTTGCTGGGCCAACACTCCGCCGAGA
GAAATCAAGATGCCACAGCTTATGTCGGCAATCTCGATCCCCAGGTTACT
GAGGAGCTACTTTGGGAGTTGTTTGTTCAAGCAGGTCCTGTTGTTAATGT
GTATGTTCCAAAAGATAGAGTGACAAACCTTCATCAAGGATACGGATTTG
TAGAGTTCCGAAGTGAGGAAGATGCTGATTATGCAATAAAGGTGCTGAAT
ATGATAAAGCTTTATGGGAAGCCGATACGTGTGAATAAGGCATCCCAAGA
CAAAAAGAGCTTAGATGTGGGGGCAAACCTTTTTATTGGAAACCTTGACC
CAGATGTGGATGAGAAACTACTATATGATACATTCAGTGCGTTTGGAGTC
ATTGTTACAAATCCCAAGATTATGCGAGATCCTGACACTGGAAATTCTCG
TGGTTTTGGTTTCATTAGCTATGATTCCTTTGAGGCATCCGATGCAGCTA
TTGAGGCAATGAATGGCCAATACCTTTGNCACCGTCAAATTACTGTCTCA
TATGCATATAAGAAAGACACTAAAGGAGAGCGCCATGGTACTCCGG
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