FC875604

Overview
NameFC875604
Unique NameFC875604
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ROA1_BOVIN (Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus GN=HNRNPA1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11
Identity = 46/157 (29.30%), Postives = 77/157 (49.04%), Query Frame = 3
Query:  147 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANL-----FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 602
            E  Q    ++G L  + T+E L   F Q G + +  V +D  T   +G+GFV + + E+ D A+      K+ G+ +   +A   + S   GA+L     F+G +  D +E  L D F  +G I    +IM D  +G  RGF F+++D  ++ D  +
Sbjct:    9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV-IEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: RO31_XENLA (Heterogeneous nuclear ribonucleoprotein A3 homolog 1 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11
Identity = 45/162 (27.78%), Postives = 78/162 (48.15%), Query Frame = 3
Query:  132 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANL-----FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 602
            G    E  Q    ++G L  + T++ L E F Q G + +  V +D  T   +G+GFV +   E+ D ++      K+ G+ +   +A   + S   GA+L     F+G +  D +E  L D   ++G I T  ++M D  +G  RGF F+++D  +  D  +
Sbjct:   17 GHDPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSA-RPHKVDGRVVEPKRAVSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYSESYGKIET-IEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 176          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: RA1L3_HUMAN (Putative heterogeneous nuclear ribonucleoprotein A1-like protein 3 OS=Homo sapiens GN=HNRPA1L3 PE=5 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11
Identity = 46/157 (29.30%), Postives = 77/157 (49.04%), Query Frame = 3
Query:  147 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANL-----FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 602
            E  Q    ++G L  + T+E L   F Q G + +  V +D  T   +G+GFV + + E+ D A+      K+ G+ +   +A   + S   GA+L     F+G +  D +E  L D F  +G I    +IM D  +G  RGF F+++D  ++ D  +
Sbjct:    9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV-IEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: RA1L2_HUMAN (Heterogeneous nuclear ribonucleoprotein A1-like protein 2 OS=Homo sapiens GN=HNRNPA1L2 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11
Identity = 46/157 (29.30%), Postives = 77/157 (49.04%), Query Frame = 3
Query:  147 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANL-----FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 602
            E  Q    ++G L  + T+E L   F Q G + +  V +D  T   +G+GFV + + E+ D A+      K+ G+ +   +A   + S   GA+L     F+G +  D +E  L D F  +G I    +IM D  +G  RGF F+++D  ++ D  +
Sbjct:    9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNT-TPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV-IEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: CELF4_DANRE (CUG-BP- and ETR-3-like factor 4 OS=Danio rerio GN=brunol4 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11
Identity = 48/152 (31.58%), Postives = 77/152 (50.66%), Query Frame = 3
Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKL---YGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 617
            ++G +   + E+ L  LF + G +  + V KDR T +H+G  F+ + + E A  A   L+  K      +PI+V  A  + +  D    LF+G L+    E  +   F +FG I     I+R PD GNS+G  F+ Y +   + AAI A++G
Sbjct:   50 FIGQIPRNLDEKDLRPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCARESALKAQTALHEQKTLPGMNRPIQVKPADSESRGED--RKLFVGMLNKQQCEDDVRRLFESFGSI-EECTILRGPD-GNSKGCAFVKYSTHAEAQAAISALHG 197          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: RO22_XENLA (Heterogeneous nuclear ribonucleoprotein A2 homolog 2 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.359e-11
Identity = 42/157 (26.75%), Postives = 77/157 (49.04%), Query Frame = 3
Query:  147 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGAN-----LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 602
            E+ Q    ++G L  + TEE L   + Q G + +  V +D  +   +G+GFV F    + D A+       + G+ +   +A   ++S   GA+     LF+G +  D +E  L + F  +G I  + +I+ D  +G  RGFGF++++  +  D  +
Sbjct:    4 EKEQFRKLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSA-RPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKI-ESTEIITDKQSGKKRGFGFVTFNDHDPVDKIV 158          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: RBM39_PONAB (RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.359e-11
Identity = 50/184 (27.17%), Postives = 84/184 (45.65%), Query Frame = 3
Query:  147 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGAN-----------LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKK 665
            E     T +   L  ++    L E F   G V +V +  DR +   +G  +VEF        AI +    ++ G PI V  +  +K      AN           L++G+L  ++ E +L   F  FG I  + ++M D +TG S+G+GFI++   E +  A+E +NG  L  R + V +  ++
Sbjct:  148 EERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQ-RVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRI-ESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: RBM39_HUMAN (RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.359e-11
Identity = 50/184 (27.17%), Postives = 84/184 (45.65%), Query Frame = 3
Query:  147 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGAN-----------LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKK 665
            E     T +   L  ++    L E F   G V +V +  DR +   +G  +VEF        AI +    ++ G PI V  +  +K      AN           L++G+L  ++ E +L   F  FG I  + ++M D +TG S+G+GFI++   E +  A+E +NG  L  R + V +  ++
Sbjct:  148 EERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQ-RVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRI-ESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: SHEP_DROWI (Protein alan shepard OS=Drosophila willistoni GN=shep PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 52/181 (28.73%), Postives = 81/181 (44.75%), Query Frame = 3
Query:   93 TTRIAPGVGANLLGQHS------AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 617
            TT     +G N   Q+        E+      Y+  L    T++ L  +  Q G +++     D+ TN  +GYGFV+F     A+ A+K      L  K ++   A Q ++      NL+I NL P   E  L    S +G +V+  +I+RD    NS+G GF   +S E  +  I+  NG
Sbjct:  208 TTNTNTNMGPNGTAQNQNQQGGGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAYAENAVK-----GLQAKGVQAQMAKQQEQD---PTNLYIANLPPHFKETDLEAMLSKYGQVVST-RILRDQQM-NSKGVGFARMESREKCEQIIQMFNG 378          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: RBM39_MOUSE (RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 50/184 (27.17%), Postives = 84/184 (45.65%), Query Frame = 3
Query:  147 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGAN-----------LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKK 665
            E     T +   L  ++    L E F   G V +V +  DR +   +G  +VEF        AI +    ++ G PI V  +  +K      AN           L++G+L  ++ E +L   F  FG I  + ++M D +TG S+G+GFI++   E +  A+E +NG  L  R + V +  ++
Sbjct:  148 EERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSRGIAYVEFVDVSSVRLAIGLTGQ-RVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRI-ESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329          
The following BLAST results are available for this feature:
BLAST of FC875604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
ROA1_BOVIN3.728e-1129.30Heterogeneous nuclear ribonucleoprotein A1 OS=Bos ... [more]
RO31_XENLA3.728e-1127.78Heterogeneous nuclear ribonucleoprotein A3 homolog... [more]
RA1L3_HUMAN3.728e-1129.30Putative heterogeneous nuclear ribonucleoprotein A... [more]
RA1L2_HUMAN3.728e-1129.30Heterogeneous nuclear ribonucleoprotein A1-like pr... [more]
CELF4_DANRE4.869e-1131.58CUG-BP- and ETR-3-like factor 4 OS=Danio rerio GN=... [more]
RO22_XENLA6.359e-1126.75Heterogeneous nuclear ribonucleoprotein A2 homolog... [more]
RBM39_PONAB6.359e-1127.17RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE... [more]
RBM39_HUMAN6.359e-1127.17RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE... [more]
SHEP_DROWI8.306e-1128.73Protein alan shepard OS=Drosophila willistoni GN=s... [more]
RBM39_MOUSE8.306e-1127.17RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE... [more]

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Properties
Property NameValue
Genbank descriptionC31405G06EF CTVClemen1 Citrus clementina cDNA clone C31405G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875604 ID=FC875604; Name=FC875604; organism=Citrus clementina; type=EST; length=696bp
GGGTAATTGGTAAATGAATAAATAAATACAAGGAACCACAGAGAGAGCGC
GGCAAGTAGAAGAAGAAGAAGTAATAACGAGTAAAAGGCATGACCACTCG
AATCGCTCCTGGAGTTGGGGCCAATTTGCTGGGCCAACACTCCGCCGAGA
GAAATCAAGATGCCACAGCTTATGTCGGCAATCTCGATCCCCAGGTTACT
GAGGAGCTACTTTGGGAGTTGTTTGTTCAAGCAGGTCCTGTTGTTAATGT
GTATGTTCCAAAAGATAGAGTGACAAACCTTCATCAAGGATACGGATTTG
TAGAGTTCCGAAGTGAGGAAGATGCTGATTATGCAATAAAGGTGCTGAAT
ATGATAAAGCTTTATGGGAAGCCGATACGTGTGAATAAGGCATCCCAAGA
CAAAAAGAGCTTAGATGTGGGGGCAAACCTTTTTATTGGAAACCTTGACC
CAGATGTGGATGAGAAACTACTATATGATACATTCAGTGCGTTTGGAGTC
ATTGTTACAAATCCCAAGATTATGCGAGATCCTGACACTGGAAATTCTCG
TGGTTTTGGTTTCATTAGCTATGATTCCTTTGAGGCATCCGATGCAGCTA
TTGAGGCAATGAATGGCCAATACCTTTGNCACCGTCAAATTACTGTCTCA
TATGCATATAAGAAAGACACTAAAGGAGAGCGCCATGGTACTCCGG
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