FC875604

Overview
NameFC875604
Unique NameFC875604
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875604_ssr58 microsatellite FC875604_ssr58:58..69. BLAST: Citrus ESTs to Prunus persica proteins V1
FC875604_ssr17 microsatellite FC875604_ssr17:17..28. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig4556 contig Ccv1_Contig4556:29..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PABP_NEOFI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.507e-28
Identity = 69/176 (39.20%), Postives = 108/176 (61.36%), Query Frame = 3
Query:  141 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKK 665
            SA +   A+ YVG LDP VTE +L+ELF   G V ++ V +D VT    GY +V + +  D + A++ LN   + GKP R+  + +D      G  N+FI NLD  +D K L+DTF+AFG I+ + K+ +D + GNS+G+GF+ Y++ EA++ AI+ +NG  L  +++ V +   K
Sbjct:   45 SANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNIL-SCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISK 218          

HSP 2 Score: 83.5741 bits (205), Expect = 1.120e-15
Identity = 53/177 (29.94%), Postives = 98/177 (55.37%), Query Frame = 3
Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI----RVNKASQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTKGE 680
            ++ NLD  +  + L + F   G +++  V +D   N  +GYGFV + + E A+ AIK +N + L  K +     ++K  +  K  ++ AN   ++I N+D +V ++     F  FG I T+  + RD + G SRGFGF+++ + +++ AA++ MN + +  +++ V  A KK  + E
Sbjct:  143 FIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEI-TSATLSRDQE-GKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREE 316          

HSP 3 Score: 76.6406 bits (187), Expect = 1.369e-13
Identity = 56/229 (24.45%), Postives = 101/229 (44.10%), Query Frame = 3
Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ-----------------DKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDT--------------------------------------------GNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTK 674
            Y+ N+D +VT+E   ++F + G + +  + +D+     +G+GFV F + + A  A+  +N  ++ G+ + V +A +                 +K S   G NL++ NL  DVD++ L + FS FG I T+ K+MRD  T                                            G S+GFGF+ + S + +  A+  MN + +  + + V+ A +KD +
Sbjct:  236 YIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQ-EGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTI-TSAKVMRDTVTAGETSESEKEKESNKENEKEGEEKTEEKPKESEEEAKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVR 462          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PABP_ASPFU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus fumigatus GN=pab1 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.507e-28
Identity = 69/176 (39.20%), Postives = 108/176 (61.36%), Query Frame = 3
Query:  141 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKK 665
            SA +   A+ YVG LDP VTE +L+ELF   G V ++ V +D VT    GY +V + +  D + A++ LN   + GKP R+  + +D      G  N+FI NLD  +D K L+DTF+AFG I+ + K+ +D + GNS+G+GF+ Y++ EA++ AI+ +NG  L  +++ V +   K
Sbjct:   45 SASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNIL-SCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISK 218          

HSP 2 Score: 83.5741 bits (205), Expect = 1.120e-15
Identity = 53/177 (29.94%), Postives = 98/177 (55.37%), Query Frame = 3
Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI----RVNKASQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTKGE 680
            ++ NLD  +  + L + F   G +++  V +D   N  +GYGFV + + E A+ AIK +N + L  K +     ++K  +  K  ++ AN   ++I N+D +V ++     F  FG I T+  + RD + G SRGFGF+++ + +++ AA++ MN + +  +++ V  A KK  + E
Sbjct:  143 FIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEI-TSATLSRDQE-GKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREE 316          

HSP 3 Score: 75.8702 bits (185), Expect = 2.335e-13
Identity = 56/231 (24.24%), Postives = 101/231 (43.72%), Query Frame = 3
Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ-----------------DKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDT----------------------------------------------GNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTK 674
            Y+ N+D +VT+E   ++F + G + +  + +D+     +G+GFV F + + A  A+  +N  ++ G+ + V +A +                 +K S   G NL++ NL  DVD++ L + FS FG I T+ K+MRD  T                                              G S+GFGF+ + S + +  A+  MN + +  + + V+ A +KD +
Sbjct:  236 YIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQ-EGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTI-TSAKVMRDTVTTGETSESEKEKEKESNKENEKEGEEKTEEKPKESEEEPKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVR 464          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PABP_ASPTN (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=pab1 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.570e-28
Identity = 73/194 (37.63%), Postives = 113/194 (58.25%), Query Frame = 3
Query:   93 TTRIAPGVGANLLGQHSAERNQ--DATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKK 665
            TT  AP   A      +   +Q   A+ YVG LDP VTE +L+ELF   G V ++ V +D VT    GY +V + +  D + A++ LN   + GKP R+  + +D      G  N+FI NLD  +D K L+DTF+AFG I+ + K+ +D + GNS+G+GF+ Y++ EA++ AI+ +NG  L  +++ V +   K
Sbjct:   23 TTPAAPAAEATAAETAAPSTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNIL-SCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISK 214          

HSP 2 Score: 87.0409 bits (214), Expect = 1.013e-16
Identity = 55/177 (31.07%), Postives = 98/177 (55.37%), Query Frame = 3
Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI----RVNKASQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTKGE 680
            ++ NLD  +  + L + F   G +++  V +D   N  +GYGFV + + E A+ AIK +N + L  K +     ++K  +  K  ++ AN   ++I NLD ++ E+     F  FG I T+  + RD + G SRGFGF++Y + +++ AA++ MN + +  +++ V  A KK  + E
Sbjct:  139 FIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEI-TSATLSRDQE-GKSRGFGFVNYSTHDSAQAAVDEMNDKEVKGQKLYVGRAQKKHEREE 312          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PABP_ASPOR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus oryzae GN=pab1 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.356e-28
Identity = 68/176 (38.64%), Postives = 108/176 (61.36%), Query Frame = 3
Query:  141 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKK 665
            +A +   A+ YVG LDP VTE +L+ELF   G V ++ V +D VT    GY +V + +  D + A++ LN   + GKP R+  + +D      G  N+FI NLD  +D K L+DTF+AFG I+ + K+ +D + GNS+G+GF+ Y++ EA++ AI+ +NG  L  +++ V +   K
Sbjct:   42 NASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNIL-SCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISK 215          

HSP 2 Score: 88.1965 bits (217), Expect = 4.547e-17
Identity = 56/177 (31.64%), Postives = 99/177 (55.93%), Query Frame = 3
Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI----RVNKASQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTKGE 680
            ++ NLD  +  + L + F   G +++  V +D   N  +GYGFV + + E A+ AIK +N + L  K +     ++K  +  K  ++ AN   ++I N+D DV E+   + F  FG I T+  + RD + G SRGFGF+++ + E++ AA++ MN + +  +++ V  A KK  + E
Sbjct:  140 FIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEI-TSATLSRDQE-GKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREE 313          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PABP_ASPNC (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=pab1 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.356e-28
Identity = 68/176 (38.64%), Postives = 108/176 (61.36%), Query Frame = 3
Query:  141 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKK 665
            +A +   A+ YVG LDP VTE +L+ELF   G V ++ V +D VT    GY +V + +  D + A++ LN   + GKP R+  + +D      G  N+FI NLD  +D K L+DTF+AFG I+ + K+ +D + GNS+G+GF+ Y++ EA++ AI+ +NG  L  +++ V +   K
Sbjct:   47 AANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNIL-SCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISK 220          

HSP 2 Score: 88.5817 bits (218), Expect = 3.481e-17
Identity = 56/177 (31.64%), Postives = 98/177 (55.37%), Query Frame = 3
Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI----RVNKASQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTKGE 680
            ++ NLD  +  + L + F   G +++  V +D   N  +GYGFV + + E A+ AIK +N + L  K +     ++K  +  K  ++ AN   ++I NLD ++D+      F  FG I T+  + RD + G SRGFGF+++ + E++ AA+E MN + +  +++ V  A KK  + E
Sbjct:  145 FIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEI-TSATLSRDQE-GKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREE 318          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PABP4_HUMAN (Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.356e-28
Identity = 69/175 (39.43%), Postives = 105/175 (60.00%), Query Frame = 3
Query:  162 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVS-YAYKKDTKGE 680
            A+ YVG+L   VTE +L+E F  AGPV+++ V +D +T    GY +V F+   DA+ A+  +N   + GKPIR+  + +D      G  N+FI NLD  +D K LYDTFSAFG I++   +    D   S+G+ F+ +++ EA+D AIE MNG  L  R++ V  +  +K+ + E
Sbjct:   11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC---DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182          

HSP 2 Score: 95.5153 bits (236), Expect = 2.848e-19
Identity = 60/182 (32.97%), Postives = 104/182 (57.14%), Query Frame = 3
Query:  141 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKK 665
            S  ++     ++ NLD  +  + L++ F   G +++  V  D   N  +GY FV F ++E AD AI+ +N + L  + + V +  S+ ++  ++GA      N++I N   +VD++ L + FS FG  ++  K+MRDP+ G S+GFGF+SY+  E ++ A+E MNG+ +  + I V  A KK
Sbjct:   92 SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLS-VKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKK 269          

HSP 3 Score: 94.3597 bits (233), Expect = 6.345e-19
Identity = 62/194 (31.96%), Postives = 102/194 (52.58%), Query Frame = 3
Query:  144 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTK 674
            A+  +    Y+ N   +V +E L ELF Q G  ++V V +D      +G+GFV +   EDA+ A++ +N  ++ GK I V +A                  Q++ S   G NL+I NLD  +D++ L   FS FG I T+ K+M +   G S+GFGF+ + S E +  A+  MNG+ +  + + V+ A +K+ +
Sbjct:  185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSI-TSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PABP_CHAGB (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Chaetomium globosum GN=PAB1 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.384e-28
Identity = 69/175 (39.43%), Postives = 108/175 (61.71%), Query Frame = 3
Query:  162 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAY-KKDTKGE 680
            A+ YVG LDP VTE +L+ELF Q G V ++ V +D +T    GY +V + S  D + A++ LN   + G+P R+  + +D      G  N+FI NLD  +D K L+DTF+AFG I+ + K+ +D + GNS+G+GF+ Y++ EA+  AI+ +N   L  +++ V Y   KKD + +
Sbjct:   65 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL-SCKVAQD-ENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKDRQSK 237          

HSP 2 Score: 78.5666 bits (192), Expect = 3.603e-14
Identity = 52/177 (29.38%), Postives = 94/177 (53.11%), Query Frame = 3
Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN----KASQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTKGE 680
            ++ NLD  +  + L + F   G +++  V +D   N  +GYGFV + ++E A  AIK +N + L  K + V     K  +  K  ++ AN   +++ N+  +  ++   D F+ +G  VT+  + RD + G SRGFGF+++ + E +  A+E +NG+    + + V  A KK  + E
Sbjct:  156 FIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGN-SKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNIYVKNISLEATDEEFRDLFAKYGD-VTSSSLARDSE-GKSRGFGFVNFTTHECAAKAVEELNGKEFRGQDLYVGRAQKKHEREE 329          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PABP_ASPCL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus clavatus GN=pab1 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.766e-28
Identity = 67/169 (39.64%), Postives = 105/169 (62.13%), Query Frame = 3
Query:  162 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKK 665
            A+ YVG LDP VTE +L+ELF   G V ++ V +D VT    GY +V + +  D + A++ LN   + GKP R+  + +D      G  N+FI NLD  +D K L+DTF+AFG I+ + K+ +D + GNS+G+GF+ Y++ EA++ AI+ +NG  L  +++ V +   K
Sbjct:   51 ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNIL-SCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISK 217          

HSP 2 Score: 92.8189 bits (229), Expect = 1.846e-18
Identity = 58/177 (32.77%), Postives = 100/177 (56.50%), Query Frame = 3
Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI----RVNKASQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTKGE 680
            ++ NLD  +  + L + F   G +++  V +D   N  +GYGFV + + E A+ AIK +N + L  K +     ++K  +  K  ++ AN   ++I N+DPDV E+     F  FG I T+  + RDP+ G SRGFGF++Y + E++ AA++ M+ + +  +++ V  A KK  + E
Sbjct:  142 FIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEI-TSATLSRDPE-GKSRGFGFVNYSTHESAQAAVDEMHDKEVKTQKLYVGRAQKKHEREE 315          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.766e-28
Identity = 65/165 (39.39%), Postives = 101/165 (61.21%), Query Frame = 3
Query:  162 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSY 653
            A+ YVG+L P VTE +L+E F  AGP++++ V +D  T    GY ++ F+   DA+ A+  +N   + G+PIR+  + +D      G  N+FI NLD  +D K LYDTFSAFG I++   +    D   SRG+GF+ +++ EA++ AI+ MNG  L  R++ V +
Sbjct:   11 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVC---DEHGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGH 172          

HSP 2 Score: 94.7449 bits (234), Expect = 4.858e-19
Identity = 62/178 (34.83%), Postives = 103/178 (57.87%), Query Frame = 3
Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKK-DTKGE 680
            ++ NLD  +  + L++ F   G +++  V  D   +  +GYGFV F ++E A+ AI+ +N + L  + + V    S+ ++ L+ GA      N++I N   D+D+K L + FSAFG  ++  K+M D DTG SRGFGF++Y + E +  A+  MNG+ +  R I V  A K+ + +GE
Sbjct:  102 FIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGS--RGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLS-VKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGE 275          

HSP 3 Score: 82.0333 bits (201), Expect = 3.259e-15
Identity = 54/197 (27.41%), Postives = 101/197 (51.27%), Query Frame = 3
Query:  135 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTK 674
            ++ A+  +    Y+ N    + ++ L E+F   G  ++V V  D  T   +G+GFV + + E+A  A+  +N  ++ G+ I V +A                  Q++ +   G NL++ NLD  +D+  L   FS +G I T+ K+M +   G+S+GFGF+ + S E +  A+  MNG+ +  + + V+ A +K+ +
Sbjct:  182 EYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTI-TSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEER 374          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PABPA_XENLA (Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-A PE=1 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 1.275e-27
Identity = 65/175 (37.14%), Postives = 106/175 (60.57%), Query Frame = 3
Query:  162 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVS-YAYKKDTKGE 680
            A+ YVG+L   VTE +L+E F  AGP++++ V +D +T    GY +V F+   DA+ A+  +N   + G+P+R+  + +D      G  N+FI NLD  +D K LYDTFSAFG I++   +    D   S+G+GF+ +++ EA++ AI+ MNG  L  R++ V  +  +K+ + E
Sbjct:   11 ASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC---DENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAE 182          

HSP 2 Score: 88.1965 bits (217), Expect = 4.547e-17
Identity = 58/194 (29.90%), Postives = 96/194 (49.48%), Query Frame = 3
Query:  144 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTK 674
            A   +    Y+ N    + +E L E+F + GP ++V V  D      +G+GFV F   EDA  A+  +N   + GK + V +A                  QD+ +   G NL++ NLD  +D++ L   F  FG I T+ K+M +   G S+GFGF+ + S E +  A+  MNG+ +  + + V+ A +K+ +
Sbjct:  185 ARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD-NGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTI-TSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374          

HSP 3 Score: 83.9593 bits (206), Expect = 8.575e-16
Identity = 52/172 (30.23%), Postives = 97/172 (56.40%), Query Frame = 3
Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKK 665
            ++ NLD  +  + L++ F   G +++  V  D   N  +GYGFV F ++E A+ AI  +N + L  + + V +  S+ ++  ++GA      N++I N   D++++ L + F  +G  ++  K+M D D G S+GFGF+S++  E +  A++ MNG+ +  + + V  A KK
Sbjct:  102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALS-VKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKK 269          
The following BLAST results are available for this feature:
BLAST of FC875604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
PABP_NEOFI1.507e-2839.20Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPFU1.507e-2839.20Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPTN2.570e-2837.63Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPOR3.356e-2838.64Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPNC3.356e-2838.64Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP4_HUMAN3.356e-2839.43Polyadenylate-binding protein 4 OS=Homo sapiens GN... [more]
PABP_CHAGB4.384e-2839.43Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPCL9.766e-2839.64Polyadenylate-binding protein, cytoplasmic and nuc... [more]
EPAB_XENTR9.766e-2839.39Embryonic polyadenylate-binding protein OS=Xenopus... [more]
PABPA_XENLA1.275e-2737.14Polyadenylate-binding protein 1-A OS=Xenopus laevi... [more]

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Properties
Property NameValue
Genbank descriptionC31405G06EF CTVClemen1 Citrus clementina cDNA clone C31405G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875604 ID=FC875604; Name=FC875604; organism=Citrus clementina; type=EST; length=696bp
GGGTAATTGGTAAATGAATAAATAAATACAAGGAACCACAGAGAGAGCGC
GGCAAGTAGAAGAAGAAGAAGTAATAACGAGTAAAAGGCATGACCACTCG
AATCGCTCCTGGAGTTGGGGCCAATTTGCTGGGCCAACACTCCGCCGAGA
GAAATCAAGATGCCACAGCTTATGTCGGCAATCTCGATCCCCAGGTTACT
GAGGAGCTACTTTGGGAGTTGTTTGTTCAAGCAGGTCCTGTTGTTAATGT
GTATGTTCCAAAAGATAGAGTGACAAACCTTCATCAAGGATACGGATTTG
TAGAGTTCCGAAGTGAGGAAGATGCTGATTATGCAATAAAGGTGCTGAAT
ATGATAAAGCTTTATGGGAAGCCGATACGTGTGAATAAGGCATCCCAAGA
CAAAAAGAGCTTAGATGTGGGGGCAAACCTTTTTATTGGAAACCTTGACC
CAGATGTGGATGAGAAACTACTATATGATACATTCAGTGCGTTTGGAGTC
ATTGTTACAAATCCCAAGATTATGCGAGATCCTGACACTGGAAATTCTCG
TGGTTTTGGTTTCATTAGCTATGATTCCTTTGAGGCATCCGATGCAGCTA
TTGAGGCAATGAATGGCCAATACCTTTGNCACCGTCAAATTACTGTCTCA
TATGCATATAAGAAAGACACTAAAGGAGAGCGCCATGGTACTCCGG
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