FC875604

Overview
NameFC875604
Unique NameFC875604
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.405e-26
Identity = 67/188 (35.64%), Postives = 111/188 (59.04%), Query Frame = 3
Query:  114 VGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKS-LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTK 674
            V A      + + + +++ YVG+LDP V E  L +LF Q  PV N+ V +D +T+   GY +V F + EDA  A++ LN   +  +PIR+  +++D  + L    N+FI NLD  +D K LY+TFS+FG I+ + K+  D   G S+G+GF+ ++  E + AAI+ +NG  L  +Q+ V +  ++  +
Sbjct:   29 VAAAAAAAEALQTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTIL-SCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDR 213          

HSP 2 Score: 88.9669 bits (219), Expect = 2.666e-17
Identity = 61/177 (34.46%), Postives = 94/177 (53.11%), Query Frame = 3
Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK--ASQDKKSLDVGA-----NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTKGE 680
            ++ NLD  +  + L+E F   G +++  V  D V    +GYGFV+F  EE A  AI  LN + L  K + V      QD+   + GA     N+++ NL  ++ +  L  TF  +G I ++  +M+D  +GNSR FGF+++ S EA+  A+E MNG  L    + V  A KK  + E
Sbjct:  135 FIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDI-SSAVVMKD-QSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREE 308          

HSP 3 Score: 80.8777 bits (198), Expect = 7.259e-15
Identity = 59/186 (31.72%), Postives = 102/186 (54.84%), Query Frame = 3
Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI----RVNKASQDKKSLD--------------VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTK 674
            YV NL  ++T++ L + F + G + +  V KD+  N  + +GFV F S E A  A++ +N I L G+ +    R  K S  ++ L                G+NL++ NLD  V+++ L + FS +G  VT+ K+M +   G SRGFGF++Y + E +  A++ MNG+ +  + + V+ A +K+ +
Sbjct:  228 YVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGN-SRSFGFVNFVSPEAAAVAVEKMNGISL-GEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGN-VTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEER 409          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PABP_KLULA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Kluyveromyces lactis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.103e-26
Identity = 67/178 (37.64%), Postives = 105/178 (58.99%), Query Frame = 3
Query:  141 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVS-YAYKKD 668
            S   N +A+ YVG LDP +TE LL+++F   GP+ ++ V +D VT    GY +V +   E    AI+ LN  ++ G+P R+  + +D      G+ N+FI NL P +D K L++TFS FG ++ + K+  D + GNSRGFGF+ +     +  AIEA+NG  +   ++ V+ +  KKD
Sbjct:   43 SKVENNNASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQELNYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVL-SCKVALD-ENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKD 218          

HSP 2 Score: 89.3521 bits (220), Expect = 2.041e-17
Identity = 58/185 (31.35%), Postives = 97/185 (52.43%), Query Frame = 3
Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ-----------------DKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTK 674
            YV N+D + T+E   +LF Q G +V+  + KD      +G+GFV F     A  A++ LN  +   + + V +A +                 +K +   G NLFI NLD  +D++ L + F+ +G I T+ ++MRD + GNS+GFGF+ + S E +  A+   N Q +  + + V+ A +KD +
Sbjct:  234 YVKNIDVETTDEEFEQLFSQYGEIVSAALEKD-AEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKLKEEFAPYGTI-TSARVMRDQE-GNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIAQRKDVR 415          

HSP 3 Score: 75.485 bits (184), Expect = 3.050e-13
Identity = 51/180 (28.33%), Postives = 91/180 (50.56%), Query Frame = 3
Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYG----------KPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTKGE 680
            ++ NL P +  + L E F   G V++  V  D   N  +G+GFV F+ E DA  AI+ +N + + G          K  R++K  + K +     N+++ N+D +  ++     FS +G IV+   + +D + G  +GFGF+++    A+  A+E +NG+    + + V  A KK  + E
Sbjct:  141 FIKNLHPAIDNKALHETFSTFGEVLSCKVALDENGN-SRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKLEEAKANF---TNIYVKNIDVETTDEEFEQLFSQYGEIVS-AALEKDAE-GKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAE 314          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.103e-26
Identity = 63/184 (34.24%), Postives = 111/184 (60.33%), Query Frame = 3
Query:  147 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKS-LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTKGERHGTP 695
            + + +++ Y G+LDP+VTE  L++LF     VV+V V +D+      GY ++ F +  DA  A++ LN   L+ +PIR+  +++D  + L    N+FI NLD  +D K L++TFS+FG I++  K+  D  TG S+G+GF+ ++  E++ AAI+ +NG  +  +Q+ V +  ++  +     TP
Sbjct:   44 QTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQ-NRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSC-KVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTP 224          

HSP 2 Score: 93.5893 bits (231), Expect = 1.082e-18
Identity = 61/177 (34.46%), Postives = 94/177 (53.11%), Query Frame = 3
Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI-------RVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTKGE 680
            ++ NLD  +  + L+E F   G +++  V  D VT   +GYGFV+F  EE A  AI  LN + +  K +       R  +A  +        N+++ NL  ++ E  L  TF  FGVI ++  +MRD  +GNSR FGF++++  EA+ +A+E MNG  L    + V  A KK  + E
Sbjct:  139 FIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVI-SSAVVMRD-QSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREE 312          

HSP 3 Score: 83.1889 bits (204), Expect = 1.463e-15
Identity = 58/185 (31.35%), Postives = 99/185 (53.51%), Query Frame = 3
Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI---RVNKASQDKKSL--------------DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTK 674
            YV NL  ++ E+ L + F + G + +  V +D+  N  + +GFV F   E A  A++ +N I L    +   R  K S+ ++ L                GANL++ NLD  VD++ L + FS +G  VT+ K+M +P  G SRGFGF++Y + E +  A+  MNG+ +  + + ++ A +K+ +
Sbjct:  232 YVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGN-SRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGN-VTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDR 413          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PAP1M_HUMAN (Polyadenylate-binding protein 1-like 2 OS=Homo sapiens GN=PABPC1L2A PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.194e-25
Identity = 62/176 (35.23%), Postives = 105/176 (59.66%), Query Frame = 3
Query:  162 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVS-YAYKKDTKGER 683
            A+ YVG+L P+VTE +L+E F  AGP++++ + +D++T    GY +V ++   DA  A++ LN   + G+P+R+  + +D      G  N+FI NL   +D K LY+ FSAFG I++        D    +G+GF+ +   E+++ AI+ MNG +L +R+I V  +   K+ + ER
Sbjct:    2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVAC---DEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAER 174          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PABP_PICST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia stipitis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.194e-25
Identity = 68/175 (38.86%), Postives = 104/175 (59.43%), Query Frame = 3
Query:  162 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITV-SYAYKKDTKGE 680
            A+ YVG L+  V E  L+E+F   G V ++ V +D V+    GY +V +   ED + AI+ LN   + G+P R+  + +D  +   G  N+FI NL P +D K L+DTFS FG I+ + K+  D D G S+ FGF+ Y++ EA++AAIE +NG  L  R++ V  +  KKD + +
Sbjct:   52 ASLYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAIEELNYSPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSTFGKIL-SCKVATD-DMGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESK 224          

HSP 2 Score: 96.2857 bits (238), Expect = 1.670e-19
Identity = 62/209 (29.67%), Postives = 110/209 (52.63%), Query Frame = 3
Query:  129 LGQHSAERNQDA----------TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDV-----------------GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTK 674
            +G+H +++++++            YV N+D + +EE L +LF   G + ++Y+ KD      +G+GFV +   E A  A++ LN  ++ G+ I V +A + ++ ++                  G NLFI NLD  +D + L + F  FG I T+ ++M D +TG S+GFGF+ + S E +  AI  MN +    + + V+ A +KD +
Sbjct:  212 VGKHISKKDRESKFEEIKANFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKD-AEGKSKGFGFVNYEGHEAAVKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGTI-TSARVMVD-ETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGKPLYVALAQRKDVR 417          

HSP 3 Score: 78.5666 bits (192), Expect = 3.603e-14
Identity = 52/187 (27.81%), Postives = 102/187 (54.55%), Query Frame = 3
Query:  141 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI----RVNKASQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTKGE 680
            SA R+ D   ++ NL P +  + L + F   G +++  V  D +    + +GFV + + E A+ AI+ +N + L  + +     ++K  ++ K  ++ AN   +++ N+D +  E+ L   F+ +G I T+  + +D + G S+GFGF++Y+  EA+  A+E +N + +  ++I V  A KK  + E
Sbjct:  133 SARRSGDGNIFIKNLHPAIDNKALHDTFSTFGKILSCKVATDDMGQ-SKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEIKANFTNIYVKNIDLEYSEEDLKKLFTPYGAI-TSIYLEKDAE-GKSKGFGFVNYEGHEAAVKAVEELNDKEINGQKIYVGRAQKKRERME 316          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PABP_EMENI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.194e-25
Identity = 65/169 (38.46%), Postives = 101/169 (59.76%), Query Frame = 3
Query:  162 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKK 665
            A+ YVG LDP VTE +L+ELF   G V ++ V +D VT    GY +V +      + A+  LN   + GKP R+  + +D      G  N+FI NLD  +D K L+DTF+AFG I+ + K+ +D + G S+G+GF+ Y++ EA++ AI+ +NG  L  +++ V +   K
Sbjct:   42 ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNIL-SCKVAQD-EFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISK 208          

HSP 2 Score: 89.3521 bits (220), Expect = 2.041e-17
Identity = 55/177 (31.07%), Postives = 100/177 (56.50%), Query Frame = 3
Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI----RVNKASQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTKGE 680
            ++ NLD  +  + L + F   G +++  V +D    + +GYGFV + + E A+ AIK +N + L  K +     ++K  +  K  ++ AN   ++I N+DP+V+++     F  FG I T+  + RD + G SRGFGF+++ + E++ AA+E MN + +  +++ V  A KK  + E
Sbjct:  133 FIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEF-GVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEI-TSATLSRDSE-GKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREE 306          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PABP_YEAST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Saccharomyces cerevisiae GN=PAB1 PE=1 SV=4)

HSP 1 Score: 116.316 bits (290), Expect = 1.559e-25
Identity = 65/167 (38.92%), Postives = 100/167 (59.88%), Query Frame = 3
Query:  153 NQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVS 650
            N  A+ YVG+L+P V+E  L+++F   G V ++ V +D +T    GY +V F   E    AI+ LN   + G+  R+  + +D      G+ N+FI NL PD+D K LYDTFS FG I+++ KI  D + G S+GFGF+ ++   A+  AI+A+NG  L  ++I V+
Sbjct:   35 NSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSS-KIATD-ENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVA 199          

HSP 2 Score: 101.293 bits (251), Expect = 5.190e-21
Identity = 61/185 (32.97%), Postives = 101/185 (54.59%), Query Frame = 3
Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDV-----------------GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTK 674
            YV N++ + T+E   ELF + GP+V+  + KD    L +G+GFV +   EDA  A++ LN  +L G+ + V +A +  + + V                 G NLF+ NLD  VD++ L + F+ +G I T+ K+MR  + G S+GFGF+ + + E +  AI   N Q +  + + V+ A +KD +
Sbjct:  222 YVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKL-KGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTI-TSAKVMRT-ENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVR 403          

HSP 3 Score: 77.7962 bits (190), Expect = 6.145e-14
Identity = 51/185 (27.57%), Postives = 93/185 (50.27%), Query Frame = 3
Query:  141 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI-------RVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTK 674
            S  +      ++ NL P +  + L++ F   G +++  +  D      +G+GFV F  E  A  AI  LN + L G+ I       R  + SQ +++     NL++ N++ +  ++   + F+ FG IV+   + +D D G  +GFGF++Y+  E +  A+EA+N   L   ++ V  A KK+ +
Sbjct:  119 SLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDE-NGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVS-ASLEKDAD-GKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNER 300          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PABP_USTMA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.536e-25
Identity = 67/183 (36.61%), Postives = 109/183 (59.56%), Query Frame = 3
Query:  108 PGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSY 653
            P VG N   +++A+   + + YVG LDP VTE +L+E+F   G V ++ V +D VT    GY +V F +  D + A++ LN   +  +P R+  + +D      G  N+FI NLD  +D K L+DTF+AFG I++    +   +TG S G+GF+ Y++ EA++AAI+ +NG  L  +++ V +
Sbjct:   30 PAVG-NGEQRNNADAANNTSLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTRRSLGYAYVNFLNAADGERAMEQLNYSLIRNRPCRIMWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCK--VATNETG-SLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGH 208          

HSP 2 Score: 91.6633 bits (226), Expect = 4.112e-18
Identity = 57/188 (30.32%), Postives = 100/188 (53.19%), Query Frame = 3
Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ-----------------DKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTKGER 683
            Y  N+DP+VT++   +LF + G + +  + +D      +G+GFV F    +A  A+  L+     G+ + V +A +                 +K +   G NL++ N+    D++ L + F+ FG I T+ KIMR P +G SRGFGF+ Y + E ++ A+  MNG+ L +R + V+ A +KD + ++
Sbjct:  230 YAKNVDPEVTDDEFEKLFTKFGKITSCVLQRDE-DGKSKGFGFVNFEDHNEAQKAVDELHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERLREEFAPFGAI-TSCKIMRAP-SGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYVALAQRKDVRRQQ 414          

HSP 3 Score: 71.633 bits (174), Expect = 4.404e-12
Identity = 50/184 (27.17%), Postives = 92/184 (50.00%), Query Frame = 3
Query:  150 RNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN----KASQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTKGE 680
            R      ++ NLD  +  + L + F   G +++  V  +   +L  GYGFV + + E A+ AIK +N + L  K + V     +  +  K  +  AN   ++  N+DP+V +      F+ FG I T+  + RD D G S+GFGF++++    +  A++ ++      +++ V+ A KK  + E
Sbjct:  131 RTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCKVATNETGSL--GYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAKIEETRANFTNVYAKNVDPEVTDDEFEKLFTKFGKI-TSCVLQRDED-GKSKGFGFVNFEDHNEAQKAVDELHDSDFKGQKLFVARAQKKSEREE 310          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PABP5_PONPY (Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.011e-24
Identity = 63/163 (38.65%), Postives = 96/163 (58.90%), Query Frame = 3
Query:  162 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITV 647
            A  YVG+LDP VTE++L++ F  AGP+    + +D VT    GYG+V FR   DA++A+  +N   + GKP R+  +  D +    G  N+FI NLD  +D + L+  FSAFG I++   +    D   S+G+ ++ +DS  A++ AI  MNG  L +RQ+ V
Sbjct:   18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVC---DDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177          

HSP 2 Score: 79.337 bits (194), Expect = 2.112e-14
Identity = 52/185 (28.11%), Postives = 94/185 (50.81%), Query Frame = 3
Query:  147 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQD-----------------KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVS 650
            +R      +V N+   + +E L ELF + GP  +V V +D  +   +G+GFV + + E A  A+  L+   + GK + V +A +                  +KS   G  ++I NLD  ++++ L + FS+FG I +  K+M +   G  +GFG + + SFE +  A++ MNG+ +  + + V+
Sbjct:  194 DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSI-SRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVT 374          

HSP 3 Score: 71.633 bits (174), Expect = 4.404e-12
Identity = 48/173 (27.75%), Postives = 93/173 (53.76%), Query Frame = 3
Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKK 665
            ++ NLD  +    L+ LF   G +++  V  D   N  +GY +V F S   A+ AI  +N ++L  + + V +    ++++ +V         N+F+ N+  D+D++ L + F  +G    + K++RD  +G S+GFGF+ Y++ EA+  A+  ++G+ +  + + V  A KK
Sbjct:  109 FIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGP-TESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKK 277          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PABP5_PANTR (Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.011e-24
Identity = 63/163 (38.65%), Postives = 96/163 (58.90%), Query Frame = 3
Query:  162 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITV 647
            A  YVG+LDP VTE++L++ F  AGP+    + +D VT    GYG+V FR   DA++A+  +N   + GKP R+  +  D +    G  N+FI NLD  +D + L+  FSAFG I++   +    D   S+G+ ++ +DS  A++ AI  MNG  L +RQ+ V
Sbjct:   18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVC---DDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177          

HSP 2 Score: 79.337 bits (194), Expect = 2.112e-14
Identity = 52/185 (28.11%), Postives = 94/185 (50.81%), Query Frame = 3
Query:  147 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQD-----------------KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVS 650
            +R      +V N+   + +E L ELF + GP  +V V +D  +   +G+GFV + + E A  A+  L+   + GK + V +A +                  +KS   G  ++I NLD  ++++ L + FS+FG I +  K+M +   G  +GFG + + SFE +  A++ MNG+ +  + + V+
Sbjct:  194 DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSI-SRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVT 374          

HSP 3 Score: 71.633 bits (174), Expect = 4.404e-12
Identity = 48/173 (27.75%), Postives = 93/173 (53.76%), Query Frame = 3
Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKK 665
            ++ NLD  +    L+ LF   G +++  V  D   N  +GY +V F S   A+ AI  +N ++L  + + V +    ++++ +V         N+F+ N+  D+D++ L + F  +G    + K++RD  +G S+GFGF+ Y++ EA+  A+  ++G+ +  + + V  A KK
Sbjct:  109 FIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGP-TESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKK 277          
The following BLAST results are available for this feature:
BLAST of FC875604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
PABP5_ARATH2.405e-2635.64Polyadenylate-binding protein 5 OS=Arabidopsis tha... [more]
PABP_KLULA4.103e-2637.64Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP3_ARATH4.103e-2634.24Polyadenylate-binding protein 3 OS=Arabidopsis tha... [more]
PAP1M_HUMAN1.194e-2535.23Polyadenylate-binding protein 1-like 2 OS=Homo sap... [more]
PABP_PICST1.194e-2538.86Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_EMENI1.194e-2538.46Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_YEAST1.559e-2538.92Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_USTMA4.536e-2536.61Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP5_PONPY1.011e-2438.65Polyadenylate-binding protein 5 OS=Pongo pygmaeus ... [more]
PABP5_PANTR1.011e-2438.65Polyadenylate-binding protein 5 OS=Pan troglodytes... [more]

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Properties
Property NameValue
Genbank descriptionC31405G06EF CTVClemen1 Citrus clementina cDNA clone C31405G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875604 ID=FC875604; Name=FC875604; organism=Citrus clementina; type=EST; length=696bp
GGGTAATTGGTAAATGAATAAATAAATACAAGGAACCACAGAGAGAGCGC
GGCAAGTAGAAGAAGAAGAAGTAATAACGAGTAAAAGGCATGACCACTCG
AATCGCTCCTGGAGTTGGGGCCAATTTGCTGGGCCAACACTCCGCCGAGA
GAAATCAAGATGCCACAGCTTATGTCGGCAATCTCGATCCCCAGGTTACT
GAGGAGCTACTTTGGGAGTTGTTTGTTCAAGCAGGTCCTGTTGTTAATGT
GTATGTTCCAAAAGATAGAGTGACAAACCTTCATCAAGGATACGGATTTG
TAGAGTTCCGAAGTGAGGAAGATGCTGATTATGCAATAAAGGTGCTGAAT
ATGATAAAGCTTTATGGGAAGCCGATACGTGTGAATAAGGCATCCCAAGA
CAAAAAGAGCTTAGATGTGGGGGCAAACCTTTTTATTGGAAACCTTGACC
CAGATGTGGATGAGAAACTACTATATGATACATTCAGTGCGTTTGGAGTC
ATTGTTACAAATCCCAAGATTATGCGAGATCCTGACACTGGAAATTCTCG
TGGTTTTGGTTTCATTAGCTATGATTCCTTTGAGGCATCCGATGCAGCTA
TTGAGGCAATGAATGGCCAATACCTTTGNCACCGTCAAATTACTGTCTCA
TATGCATATAAGAAAGACACTAAAGGAGAGCGCCATGGTACTCCGG
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