FC875604

Overview
NameFC875604
Unique NameFC875604
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875604_ssr58 microsatellite FC875604_ssr58:58..69. BLAST: Citrus ESTs to Prunus persica proteins V1
FC875604_ssr17 microsatellite FC875604_ssr17:17..28. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig4556 contig Ccv1_Contig4556:29..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: TIAR_MOUSE (Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.364e-20
Identity = 65/188 (34.57%), Postives = 100/188 (53.19%), Query Frame = 3
Query:  156 QDATAYVGNLDPQVTEELLWELFVQAGPVVNVYV----PKDRVTNLHQG-----------YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA---SQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKK 665
            Q  T YVGNL   VTE L+ +LF Q GP  +  +    P  R  N   G           Y FVEF    DA  A+  +N  K+ GK ++VN A   S  KK      ++F+G+L P++  + +   F+ FG I ++ ++++D  TG S+G+GF+S+ +   ++ AI  M GQ+L  RQI  ++A +K
Sbjct:    7 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKI-SDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 193          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PAP1B_DICDI (Polyadenylate-binding protein 1-B OS=Dictyostelium discoideum GN=pabpc1B PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.364e-20
Identity = 58/169 (34.32%), Postives = 102/169 (60.36%), Query Frame = 3
Query:  153 NQDATAYVGNLDPQVTEELLWELFVQAG--PVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQD--KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITV 647
            +Q  + YVG+L   V E +L ELF + G   + +++V +D  T    GY +V F +  DA+ A+  LN   ++GKP R+  + +D  K+  +VG N+F+ NL+  VD  +LYDTFS+FG I++      + + G S+G+G++ +++ ++++ AIE +NG  +  + I V
Sbjct:  181 HQLTSLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAERALDTLNYTLVHGKPCRIMWSYRDPTKRKTNVG-NIFVKNLEKGVDNAMLYDTFSSFGNILS---CKVEFEKGISKGYGYVHFETNDSAEKAIEKVNGTLILGKPINV 345          

HSP 2 Score: 71.2478 bits (173), Expect = 5.752e-12
Identity = 52/194 (26.80%), Postives = 93/194 (47.94%), Query Frame = 3
Query:  180 NLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN---------------------MIKLYGKPIRVNKASQD--------KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTK 674
            N D  +T E+L +        +   + K+      +G G VEF+++EDA    K+L                       I++ GKPI +++            KK+ D+  +LFI N+D  +D  L+ + F+  G I+   KI++D +  N +GFGFIS+   + +  A++++NG     +QI VS++ K + +
Sbjct:  365 NADESITIEILQQELSNRFGEIESCILKNDANGKSKGLGLVEFKNQEDAQ---KILTESGALIISTIDGTTTVSSNGGTIEINGKPITIDRIKSKVERFTEYRKKTTDL--SLFINNIDESIDRDLIKEEFAKHGTII-GIKIVQDENARN-KGFGFISFSEIQEAQKALDSLNGFTFGSKQIQVSFSNKDNNQ 551          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.738e-20
Identity = 62/185 (33.51%), Postives = 101/185 (54.59%), Query Frame = 3
Query:  132 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKK 665
            GQ  +E  ++A  +VGNL   V  E L  +F  AG V    V  +R T+  +G+GFV   + E+A+ A+++LN   + G+ + VNKA+         +   +    +++GNL  DVD   L   FS  G +V + +++ D +TG SRGFGF++  S    + AI A++GQ L  R + V+ A ++
Sbjct:   45 GQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVV-SARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEER 228          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.738e-20
Identity = 68/186 (36.56%), Postives = 97/186 (52.15%), Query Frame = 3
Query:  147 ERN--QDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKK--------------SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYA 656
            ERN   D   +VGNL        L ELF +AG V  V V  D++T   +G+GFV   S+E+ + A +  N  +L G+ +RVN     +K              S D    +++GNL   VD+  L   FS  G +V + K++ D D+G SRGFGF++Y S E  + AIE+++G  L  R I VS A
Sbjct:   80 ERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVV-DAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPA 264          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.788e-20
Identity = 63/187 (33.69%), Postives = 98/187 (52.41%), Query Frame = 3
Query:  147 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA---SQDKKSLDVGA-----------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKK 665
            E     T YVGNL   VTE L+ +LF Q GP  N  +  D   N    Y FVEF     A  A+  +N  K+ GK ++VN A   S  KK                 ++F+G+L P++  + +   F+ FG I ++ ++++D  TG S+G+GF+S+ +   ++ AI+ M GQ+L  RQI  ++A +K
Sbjct:    2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN--DPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRI-SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185          

HSP 2 Score: 70.0922 bits (170), Expect = 1.281e-11
Identity = 53/181 (29.28%), Postives = 88/181 (48.62%), Query Frame = 3
Query:  141 SAERNQDAT-AYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQD---------------------KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 617
            S +R+QD    +VG+L P++T E +   F   G + +  V KD  T   +GYGFV F ++ DA+ AI+ +    L G+ IR N A++                       +S      ++ G +   + E+L+  TFS FG I+   +I   PD    +G+ F+ + S E++  AI ++NG
Sbjct:   98 STQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIM---EIRVFPD----KGYSFVRFSSHESAAHAIVSVNG 271          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 9.788e-20
Identity = 63/187 (33.69%), Postives = 98/187 (52.41%), Query Frame = 3
Query:  147 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA---SQDKKSLDVGA-----------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKK 665
            E     T YVGNL   VTE L+ +LF Q GP  N  +  D   N    Y FVEF     A  A+  +N  K+ GK ++VN A   S  KK                 ++F+G+L P++  + +   F+ FG I ++ ++++D  TG S+G+GF+S+ +   ++ AI+ M GQ+L  RQI  ++A +K
Sbjct:    2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN--DPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRI-SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185          

HSP 2 Score: 70.8626 bits (172), Expect = 7.512e-12
Identity = 53/181 (29.28%), Postives = 89/181 (49.17%), Query Frame = 3
Query:  141 SAERNQDAT-AYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQD---------------------KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 617
            S +R+QD    +VG+L P++T E +   F   G + +  V KD  T   +GYGFV F ++ DA+ AI+ +    L G+ IR N A++                       +S      ++ G +   + E+L+  TFS FG I+   +I   PD    +G+ F+ ++S E++  AI ++NG
Sbjct:   98 STQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIM---EIRVFPD----KGYSFVRFNSHESAAHAIVSVNG 271          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.670e-19
Identity = 61/180 (33.89%), Postives = 98/180 (54.44%), Query Frame = 3
Query:  147 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKK 665
            E +++A  +VGNL   V  + L  LF QAG V    V  +R T+  +G+GFV   S ++A+ A++  N   L G+ + VNKA+       +  +  +    +++GNL  DVD   L   FS  G +V   +++ D +TG SRGFGF++    +  + AI A++GQ L  R I V+ A ++
Sbjct:  145 EPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVV-EARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 323          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.720e-19
Identity = 59/180 (32.78%), Postives = 100/180 (55.56%), Query Frame = 3
Query:  147 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKK 665
            E ++DA  +VGNL   +  E L +LF QAG V    V  +R T+  +G+GFV   + E+AD A+++ +   L G+ + VNKA+       +  ++      +++GN+  D+D+  L   FS  G +V + +++ D ++G SRGFGF++  S      AI  ++GQ L  R I V+ A ++
Sbjct:   92 EPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVV-SARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEER 270          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ELAV3_MOUSE (ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.858e-19
Identity = 57/165 (34.55%), Postives = 88/165 (53.33%), Query Frame = 3
Query:  126 LLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQ 620
            LLG + A  +      V  L   +T++    LF   G + +  + +D++T    GYGFV +    DAD AI  LN +KL  K I+V+ A     S+   ANL++  L   + +K +   FS +G I+T+ +I+ D  TG SRG GFI +D    ++ AI+ +NGQ
Sbjct:   27 LLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMSQKEMEQLFSQYGRIITS-RILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.345e-19
Identity = 68/192 (35.42%), Postives = 97/192 (50.52%), Query Frame = 3
Query:  147 ERN--QDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKK--------------------SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYA 656
            ERN   D   +VGNL        L ELF +AG V  V V  D++T   +G+GFV   S+E+ + A +  N  +L G+ +RVN     +K                    S D    +++GNL   VD+  L   FS  G +V + K++ D D+G SRGFGF++Y S E  + AIE+++G  L  R I VS A
Sbjct:   80 ERNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVV-DAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPA 270          
The following BLAST results are available for this feature:
BLAST of FC875604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
TIAR_MOUSE3.364e-2034.57Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=... [more]
PAP1B_DICDI3.364e-2034.32Polyadenylate-binding protein 1-B OS=Dictyostelium... [more]
ROC1_SPIOL5.738e-2033.5128 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]
ROC1_NICSY5.738e-2036.5629 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
TIA1_MOUSE9.788e-2033.69Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=... [more]
TIA1_HUMAN9.788e-2033.69Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=T... [more]
ROC3_ARATH1.670e-1933.8931 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
ROC3_NICSY3.720e-1932.7828 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ELAV3_MOUSE4.858e-1934.55ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1... [more]
ROC1_NICPL6.345e-1935.4230 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31405G06EF CTVClemen1 Citrus clementina cDNA clone C31405G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875604 ID=FC875604; Name=FC875604; organism=Citrus clementina; type=EST; length=696bp
GGGTAATTGGTAAATGAATAAATAAATACAAGGAACCACAGAGAGAGCGC
GGCAAGTAGAAGAAGAAGAAGTAATAACGAGTAAAAGGCATGACCACTCG
AATCGCTCCTGGAGTTGGGGCCAATTTGCTGGGCCAACACTCCGCCGAGA
GAAATCAAGATGCCACAGCTTATGTCGGCAATCTCGATCCCCAGGTTACT
GAGGAGCTACTTTGGGAGTTGTTTGTTCAAGCAGGTCCTGTTGTTAATGT
GTATGTTCCAAAAGATAGAGTGACAAACCTTCATCAAGGATACGGATTTG
TAGAGTTCCGAAGTGAGGAAGATGCTGATTATGCAATAAAGGTGCTGAAT
ATGATAAAGCTTTATGGGAAGCCGATACGTGTGAATAAGGCATCCCAAGA
CAAAAAGAGCTTAGATGTGGGGGCAAACCTTTTTATTGGAAACCTTGACC
CAGATGTGGATGAGAAACTACTATATGATACATTCAGTGCGTTTGGAGTC
ATTGTTACAAATCCCAAGATTATGCGAGATCCTGACACTGGAAATTCTCG
TGGTTTTGGTTTCATTAGCTATGATTCCTTTGAGGCATCCGATGCAGCTA
TTGAGGCAATGAATGGCCAATACCTTTGNCACCGTCAAATTACTGTCTCA
TATGCATATAAGAAAGACACTAAAGGAGAGCGCCATGGTACTCCGG
back to top