FC875604

Overview
NameFC875604
Unique NameFC875604
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875604_ssr58 microsatellite FC875604_ssr58:58..69. BLAST: Citrus ESTs to Prunus persica proteins V1
FC875604_ssr17 microsatellite FC875604_ssr17:17..28. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig4556 contig Ccv1_Contig4556:29..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: RBM7_MOUSE (RNA-binding protein 7 OS=Mus musculus GN=Rbm7 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.257e-16
Identity = 47/108 (43.52%), Postives = 67/108 (62.04%), Query Frame = 3
Query:  141 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN-KASQDKKSLDVGANL---FIGNLDP 452
            +A    D T +VGNL+ +VTEELL+ELF QAGPV+ V +PKD+   L Q + FV F+ E    YA+ +LN IKL+G+PI++  ++     S D   +     +GNL P
Sbjct:    3 AAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKLKQ-FAFVNFKHEVSVPYAMNLLNGIKLFGRPIKIQFRSGSSHASQDASVSYPQHHVGNLSP 109          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PUF60_RAT (Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.849e-16
Identity = 56/184 (30.43%), Postives = 97/184 (52.72%), Query Frame = 3
Query:  135 QHSAERNQDATA-----YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS---QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 626
            Q  A + Q A A     YVG++  ++ E+ + + F   GP+ ++ +  D VT  H+G+ FVE+   E A  A++ +N + L G+ I+V + S   Q +  +D  A        +++ ++  D+ +  +   F AFG I  +  + RDP TG  +G+GFI Y+  ++S  A+ +MN     GQYL
Sbjct:  120 QSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKI-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 302          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PUF60_PONAB (Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.849e-16
Identity = 56/184 (30.43%), Postives = 97/184 (52.72%), Query Frame = 3
Query:  135 QHSAERNQDATA-----YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS---QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 626
            Q  A + Q A A     YVG++  ++ E+ + + F   GP+ ++ +  D VT  H+G+ FVE+   E A  A++ +N + L G+ I+V + S   Q +  +D  A        +++ ++  D+ +  +   F AFG I  +  + RDP TG  +G+GFI Y+  ++S  A+ +MN     GQYL
Sbjct:  114 QSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKI-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 296          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PUF60_MOUSE (Poly(U)-binding-splicing factor PUF60 OS=Mus musculus GN=Puf60 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.849e-16
Identity = 56/184 (30.43%), Postives = 97/184 (52.72%), Query Frame = 3
Query:  135 QHSAERNQDATA-----YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS---QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 626
            Q  A + Q A A     YVG++  ++ E+ + + F   GP+ ++ +  D VT  H+G+ FVE+   E A  A++ +N + L G+ I+V + S   Q +  +D  A        +++ ++  D+ +  +   F AFG I  +  + RDP TG  +G+GFI Y+  ++S  A+ +MN     GQYL
Sbjct:  120 QSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKI-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 302          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PUF60_HUMAN (Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.849e-16
Identity = 56/184 (30.43%), Postives = 97/184 (52.72%), Query Frame = 3
Query:  135 QHSAERNQDATA-----YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS---QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 626
            Q  A + Q A A     YVG++  ++ E+ + + F   GP+ ++ +  D VT  H+G+ FVE+   E A  A++ +N + L G+ I+V + S   Q +  +D  A        +++ ++  D+ +  +   F AFG I  +  + RDP TG  +G+GFI Y+  ++S  A+ +MN     GQYL
Sbjct:  115 QSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKI-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 297          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PUF60_BOVIN (Poly(U)-binding-splicing factor PUF60 OS=Bos taurus GN=PUF60 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.849e-16
Identity = 56/184 (30.43%), Postives = 97/184 (52.72%), Query Frame = 3
Query:  135 QHSAERNQDATA-----YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS---QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 626
            Q  A + Q A A     YVG++  ++ E+ + + F   GP+ ++ +  D VT  H+G+ FVE+   E A  A++ +N + L G+ I+V + S   Q +  +D  A        +++ ++  D+ +  +   F AFG I  +  + RDP TG  +G+GFI Y+  ++S  A+ +MN     GQYL
Sbjct:   86 QSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKI-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 268          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ELAV2_XENLA (ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.027e-16
Identity = 54/150 (36.00%), Postives = 84/150 (56.00%), Query Frame = 3
Query:  174 VGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQ-GYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQ 620
            V  L   +T+E L  LF   G + +  + +D++T     GYGFV +   +DA+ AI  LN ++L  K I+V+ A     S+   ANL++  L   + +K L   FS +G I+T+ +I+ D  TG SRG GFI +D    ++ AI+ +NGQ
Sbjct:   70 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYGRIITS-RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 217          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: SXL_DROSU (Protein sex-lethal OS=Drosophila subobscura GN=Sxl PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.566e-16
Identity = 53/156 (33.97%), Postives = 80/156 (51.28%), Query Frame = 3
Query:  147 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN 614
            +R+ +    V  L   +T+  L+ LF   GP+    + +D  T    GY FV+F SE D+  AIKVLN I +  K ++V+ A    +S+    NL++ NL   + +  L   F  +G IV    I+RD  TG  RG  F+ Y+  E +  AI A+N
Sbjct:  122 QRSSNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIK-DTNLYVTNLPRTITDDQLDTIFGKYGSIV-QKNILRDKLTGRPRGVAFVRYNKREEAQEAISALN 275          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: FCA_ARATH (Flowering time control protein FCA OS=Arabidopsis thaliana GN=FCA PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.566e-16
Identity = 59/168 (35.12%), Postives = 93/168 (55.36%), Query Frame = 3
Query:  132 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVL-NMIKLYG--KPIRVNKASQDKKSL-DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQY 623
            G   ++R+     +VG++    TEE +   F Q G V+ V + KD+ T   QG  FV++ + +DAD AI+ L N I L G   P++V  A  +++ +  +   LF+G+L+    EK + + F  FG  V +  +MRD +   SRG GF+ Y S E + AAI+ +NG Y
Sbjct:  110 GTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFG-HVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAIDGLNGTY 275          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ELAV1_XENTR (ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.566e-16
Identity = 52/148 (35.14%), Postives = 81/148 (54.73%), Query Frame = 3
Query:  174 VGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 617
            V  L   +T++ L  LF   G V +  + +D+V     GYGFV + + +DA+ AI  LN ++L  K I+V+ A    +S+   ANL+I  L   + +K + D F  FG I+ N +++ D  TG SRG  FI +D    ++ AI + NG
Sbjct:   24 VNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSVARPSSESIK-DANLYISGLPRTMTQKDVEDMFLPFGRII-NSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169          
The following BLAST results are available for this feature:
BLAST of FC875604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
RBM7_MOUSE2.257e-1643.52RNA-binding protein 7 OS=Mus musculus GN=Rbm7 PE=1... [more]
PUF60_RAT3.849e-1630.43Poly(U)-binding-splicing factor PUF60 OS=Rattus no... [more]
PUF60_PONAB3.849e-1630.43Poly(U)-binding-splicing factor PUF60 OS=Pongo abe... [more]
PUF60_MOUSE3.849e-1630.43Poly(U)-binding-splicing factor PUF60 OS=Mus muscu... [more]
PUF60_HUMAN3.849e-1630.43Poly(U)-binding-splicing factor PUF60 OS=Homo sapi... [more]
PUF60_BOVIN3.849e-1630.43Poly(U)-binding-splicing factor PUF60 OS=Bos tauru... [more]
ELAV2_XENLA5.027e-1636.00ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE... [more]
SXL_DROSU6.566e-1633.97Protein sex-lethal OS=Drosophila subobscura GN=Sxl... [more]
FCA_ARATH6.566e-1635.12Flowering time control protein FCA OS=Arabidopsis ... [more]
ELAV1_XENTR6.566e-1635.14ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl... [more]

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Properties
Property NameValue
Genbank descriptionC31405G06EF CTVClemen1 Citrus clementina cDNA clone C31405G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875604 ID=FC875604; Name=FC875604; organism=Citrus clementina; type=EST; length=696bp
GGGTAATTGGTAAATGAATAAATAAATACAAGGAACCACAGAGAGAGCGC
GGCAAGTAGAAGAAGAAGAAGTAATAACGAGTAAAAGGCATGACCACTCG
AATCGCTCCTGGAGTTGGGGCCAATTTGCTGGGCCAACACTCCGCCGAGA
GAAATCAAGATGCCACAGCTTATGTCGGCAATCTCGATCCCCAGGTTACT
GAGGAGCTACTTTGGGAGTTGTTTGTTCAAGCAGGTCCTGTTGTTAATGT
GTATGTTCCAAAAGATAGAGTGACAAACCTTCATCAAGGATACGGATTTG
TAGAGTTCCGAAGTGAGGAAGATGCTGATTATGCAATAAAGGTGCTGAAT
ATGATAAAGCTTTATGGGAAGCCGATACGTGTGAATAAGGCATCCCAAGA
CAAAAAGAGCTTAGATGTGGGGGCAAACCTTTTTATTGGAAACCTTGACC
CAGATGTGGATGAGAAACTACTATATGATACATTCAGTGCGTTTGGAGTC
ATTGTTACAAATCCCAAGATTATGCGAGATCCTGACACTGGAAATTCTCG
TGGTTTTGGTTTCATTAGCTATGATTCCTTTGAGGCATCCGATGCAGCTA
TTGAGGCAATGAATGGCCAATACCTTTGNCACCGTCAAATTACTGTCTCA
TATGCATATAAGAAAGACACTAAAGGAGAGCGCCATGGTACTCCGG
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