FC875604
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: RBM7_MOUSE (RNA-binding protein 7 OS=Mus musculus GN=Rbm7 PE=1 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.257e-16 Identity = 47/108 (43.52%), Postives = 67/108 (62.04%), Query Frame = 3 Query: 141 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN-KASQDKKSLDVGANL---FIGNLDP 452 +A D T +VGNL+ +VTEELL+ELF QAGPV+ V +PKD+ L Q + FV F+ E YA+ +LN IKL+G+PI++ ++ S D + +GNL P Sbjct: 3 AAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKLKQ-FAFVNFKHEVSVPYAMNLLNGIKLFGRPIKIQFRSGSSHASQDASVSYPQHHVGNLSP 109
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PUF60_RAT (Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60 PE=2 SV=2) HSP 1 Score: 85.1149 bits (209), Expect = 3.849e-16 Identity = 56/184 (30.43%), Postives = 97/184 (52.72%), Query Frame = 3 Query: 135 QHSAERNQDATA-----YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS---QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 626 Q A + Q A A YVG++ ++ E+ + + F GP+ ++ + D VT H+G+ FVE+ E A A++ +N + L G+ I+V + S Q + +D A +++ ++ D+ + + F AFG I + + RDP TG +G+GFI Y+ ++S A+ +MN GQYL Sbjct: 120 QSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKI-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 302
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PUF60_PONAB (Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.849e-16 Identity = 56/184 (30.43%), Postives = 97/184 (52.72%), Query Frame = 3 Query: 135 QHSAERNQDATA-----YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS---QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 626 Q A + Q A A YVG++ ++ E+ + + F GP+ ++ + D VT H+G+ FVE+ E A A++ +N + L G+ I+V + S Q + +D A +++ ++ D+ + + F AFG I + + RDP TG +G+GFI Y+ ++S A+ +MN GQYL Sbjct: 114 QSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKI-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 296
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PUF60_MOUSE (Poly(U)-binding-splicing factor PUF60 OS=Mus musculus GN=Puf60 PE=2 SV=2) HSP 1 Score: 85.1149 bits (209), Expect = 3.849e-16 Identity = 56/184 (30.43%), Postives = 97/184 (52.72%), Query Frame = 3 Query: 135 QHSAERNQDATA-----YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS---QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 626 Q A + Q A A YVG++ ++ E+ + + F GP+ ++ + D VT H+G+ FVE+ E A A++ +N + L G+ I+V + S Q + +D A +++ ++ D+ + + F AFG I + + RDP TG +G+GFI Y+ ++S A+ +MN GQYL Sbjct: 120 QSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKI-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 302
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PUF60_HUMAN (Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.849e-16 Identity = 56/184 (30.43%), Postives = 97/184 (52.72%), Query Frame = 3 Query: 135 QHSAERNQDATA-----YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS---QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 626 Q A + Q A A YVG++ ++ E+ + + F GP+ ++ + D VT H+G+ FVE+ E A A++ +N + L G+ I+V + S Q + +D A +++ ++ D+ + + F AFG I + + RDP TG +G+GFI Y+ ++S A+ +MN GQYL Sbjct: 115 QSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKI-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 297
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PUF60_BOVIN (Poly(U)-binding-splicing factor PUF60 OS=Bos taurus GN=PUF60 PE=2 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.849e-16 Identity = 56/184 (30.43%), Postives = 97/184 (52.72%), Query Frame = 3 Query: 135 QHSAERNQDATA-----YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS---QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 626 Q A + Q A A YVG++ ++ E+ + + F GP+ ++ + D VT H+G+ FVE+ E A A++ +N + L G+ I+V + S Q + +D A +++ ++ D+ + + F AFG I + + RDP TG +G+GFI Y+ ++S A+ +MN GQYL Sbjct: 86 QSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKI-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 268
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ELAV2_XENLA (ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2) HSP 1 Score: 84.7297 bits (208), Expect = 5.027e-16 Identity = 54/150 (36.00%), Postives = 84/150 (56.00%), Query Frame = 3 Query: 174 VGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQ-GYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQ 620 V L +T+E L LF G + + + +D++T GYGFV + +DA+ AI LN ++L K I+V+ A S+ ANL++ L + +K L FS +G I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ Sbjct: 70 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYGRIITS-RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 217
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: SXL_DROSU (Protein sex-lethal OS=Drosophila subobscura GN=Sxl PE=2 SV=2) HSP 1 Score: 84.3445 bits (207), Expect = 6.566e-16 Identity = 53/156 (33.97%), Postives = 80/156 (51.28%), Query Frame = 3 Query: 147 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN 614 +R+ + V L +T+ L+ LF GP+ + +D T GY FV+F SE D+ AIKVLN I + K ++V+ A +S+ NL++ NL + + L F +G IV I+RD TG RG F+ Y+ E + AI A+N Sbjct: 122 QRSSNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIK-DTNLYVTNLPRTITDDQLDTIFGKYGSIV-QKNILRDKLTGRPRGVAFVRYNKREEAQEAISALN 275
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: FCA_ARATH (Flowering time control protein FCA OS=Arabidopsis thaliana GN=FCA PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 6.566e-16 Identity = 59/168 (35.12%), Postives = 93/168 (55.36%), Query Frame = 3 Query: 132 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVL-NMIKLYG--KPIRVNKASQDKKSL-DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQY 623 G ++R+ +VG++ TEE + F Q G V+ V + KD+ T QG FV++ + +DAD AI+ L N I L G P++V A +++ + + LF+G+L+ EK + + F FG V + +MRD + SRG GF+ Y S E + AAI+ +NG Y Sbjct: 110 GTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFG-HVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAIDGLNGTY 275
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ELAV1_XENTR (ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 6.566e-16 Identity = 52/148 (35.14%), Postives = 81/148 (54.73%), Query Frame = 3 Query: 174 VGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 617 V L +T++ L LF G V + + +D+V GYGFV + + +DA+ AI LN ++L K I+V+ A +S+ ANL+I L + +K + D F FG I+ N +++ D TG SRG FI +D ++ AI + NG Sbjct: 24 VNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSVARPSSESIK-DANLYISGLPRTMTQKDVEDMFLPFGRII-NSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169 The following BLAST results are available for this feature:
BLAST of FC875604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 191
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875604 ID=FC875604; Name=FC875604; organism=Citrus clementina; type=EST; length=696bpback to top |