FC875605
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875605 vs. ExPASy Swiss-Prot
Match: RS4E_HALMA (30S ribosomal protein S4E OS=Haloarcula marismortui GN=rps4e PE=1 SV=3) HSP 1 Score: 84.7297 bits (208), Expect = 4.814e-16 Identity = 51/183 (27.87%), Postives = 91/183 (49.73%), Query Frame = 2 Query: 113 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT-IRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGG 658 + H KRL+ P W +++ F K +GPH +PL++VLR+ L YA +E L + +VL++GK +D+ P G D+++ + E +R+ GR L ++ + A+ KL K+ + G + +DG T I D A D+I + E+ ++ +++ G +V G Sbjct: 1 MSNHQKRLSVPNSWPVERKTATFTVKAGAGPH-GESGVPLLIVLRDVLGYADNRKEARYALNEDNVLINGKAISDEERPVGMFDILAFTEREEYYRVFPGEGGRLALTAIDPDAAQSKLGKIVTKTHVSGGDVQLGLHDGETLIVEDDQTYDAGDSIVVGNEDGEVVAHFEYEEGALVTAVDG 182
BLAST of FC875605 vs. ExPASy Swiss-Prot
Match: RS4E_NATPD (30S ribosomal protein S4e OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps4e PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 8.212e-16 Identity = 51/183 (27.87%), Postives = 90/183 (49.18%), Query Frame = 2 Query: 113 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPD-PLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGG 658 + H KRL PK W +++ A+ K ++GPH E +PL++VLR+ L Y + +E L Q +L++G +D+ P G D+++ + E +R+ D GR L + ++ A KL K+ G ++ +DG T+ D ND+I + + +I ++ G +V G Sbjct: 1 MTNHQKRLAVPKSWPVERKEEAYTTKAAAGPH-GEEGVPLLIVLRDVLGYVDSKKEARYALEQDSILINGTAVSDERRPVGMFDILAFDEREEYYRIFPDEGGRLSLTPIDEDAAGSKLGKIVGKTQVAGGDTQLSLHDGETLLVEDATAYDTNDSIVVSNDGEEIVAHFTYEEGALVTAVSG 182
BLAST of FC875605 vs. ExPASy Swiss-Prot
Match: RS4E_HALLT (30S ribosomal protein S4e OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rps4e PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.072e-15 Identity = 51/184 (27.72%), Postives = 88/184 (47.83%), Query Frame = 2 Query: 113 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRY-PDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGR 661 + +H KRL P W +++ F K +GPH +PL+++LR+ L Y + +E L VLV+G +D+ P G D+++ P+ E FR+ D GR L S+ +E A +L K+ + G + +DG + D D+I +D E + +++ G +V G+ Sbjct: 1 MTRHQKRLAVPNSWPVERKTNTFTVKAGAGPH-GEAGVPLVVLLRDVLGYVDSTKEARYALNNDSVLVNGDAISDEQRPIGMFDILAFPERGEFFRVFPDEGGRLALTSVDEEAAGSRLGKITNKSVVPGGDAQLTLHDGTNVLVDADTEYDTKDSIVVDNESKDVVAHFEYEEGALVTAVAGQ 183 The following BLAST results are available for this feature:
BLAST of FC875605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 103
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875605 ID=FC875605; Name=FC875605; organism=Citrus clementina; type=EST; length=680bpback to top |