FC875605
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875605 vs. ExPASy Swiss-Prot
Match: RS4_DROME (40S ribosomal protein S4 OS=Drosophila melanogaster GN=RpS4 PE=2 SV=2) HSP 1 Score: 270.396 bits (690), Expect = 6.186e-72 Identity = 127/187 (67.91%), Postives = 153/187 (81.82%), Query Frame = 2 Query: 101 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGR 661 MARG KKHLKRL APK WMLDKLGG FAP+PS+GPHK RE LPL++ LRNRLKYAL EV I+MQR V VDGKVRTD TYPAG+MDV+++ KT E FRL+YD KGRF +H + EEAK+KLCKV+ Q G KG+P++ T+DGRTIRYPDPLI AND++++D+ KITD+IKFD GN+ M+TGGR Sbjct: 1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGR 187
BLAST of FC875605 vs. ExPASy Swiss-Prot
Match: RS4_DICDI (40S ribosomal protein S4 OS=Dictyostelium discoideum GN=rps4 PE=1 SV=3) HSP 1 Score: 270.011 bits (689), Expect = 8.079e-72 Identity = 132/186 (70.97%), Postives = 149/186 (80.11%), Query Frame = 2 Query: 101 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGG 658 MARG KKHLKRL AP HWMLDKL G +AP+PSSGPHK RECLPLILVLRNRLKYALT +EV ILMQR V VDGKVRTD YPAGFMDV+SI KT ENFRLL+D KGRF L + EEAKFKL +V V+ G +GIPY++T DGRTIRYPDP I +DTIK+D+E KIT FI F+V N+ M+ GG Sbjct: 1 MARGPKKHLKRLAAPNHWMLDKLSGKWAPRPSSGPHKLRECLPLILVLRNRLKYALTKKEVTLILMQRLVKVDGKVRTDPNYPAGFMDVISIEKTKENFRLLFDPKGRFTLQRITPEEAKFKLARVTRVETGNQGIPYVHTDDGRTIRYPDPAISIHDTIKIDIESGKITAFIPFEVNNLCMIVGG 186
BLAST of FC875605 vs. ExPASy Swiss-Prot
Match: RS4Y1_PONPY (40S ribosomal protein S4, Y isoform 1 OS=Pongo pygmaeus GN=RPS4Y1 PE=3 SV=2) HSP 1 Score: 269.626 bits (688), Expect = 1.055e-71 Identity = 129/186 (69.35%), Postives = 150/186 (80.65%), Query Frame = 2 Query: 101 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGG 658 MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQR + +DGKVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF + + EEAK+KLCKVR + G KGIP++ T+D RTIRYPDPLIK NDT+++DL KI +FIKFD GN+ MV GG Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDITYPAGFMDVISIDKTGEHFRLVYDTKGRFAVQRITVEEAKYKLCKVRKITVGMKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKIINFIKFDTGNVCMVIGG 186
BLAST of FC875605 vs. ExPASy Swiss-Prot
Match: RS4Y2_HUMAN (40S ribosomal protein S4, Y isoform 2 OS=Homo sapiens GN=RPS4Y2 PE=1 SV=3) HSP 1 Score: 262.692 bits (670), Expect = 1.290e-69 Identity = 126/186 (67.74%), Postives = 148/186 (79.57%), Query Frame = 2 Query: 101 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGG 658 MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQ + +DGKVR D TYPAGF+DV+SI KT E+FRL+Y+TKG F +H + EEAK+KLCKVR + G KGIP++ T+D RTIRYPDPLIK NDT+++DL KIT FIKFD GN+ MV G Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQHFLKIDGKVRVDITYPAGFIDVISIEKTGEHFRLVYNTKGCFAVHRITVEEAKYKLCKVRKITVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKITSFIKFDTGNVCMVIAG 186
BLAST of FC875605 vs. ExPASy Swiss-Prot
Match: RS4_CANAL (40S ribosomal protein S4 OS=Candida albicans GN=RPS4 PE=3 SV=1) HSP 1 Score: 261.536 bits (667), Expect = 2.874e-69 Identity = 125/187 (66.84%), Postives = 148/187 (79.14%), Query Frame = 2 Query: 101 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGR 661 M RG KKHLKRL AP HWML KL G +AP+PS+GPH RE LPL + LRNRL YAL REV AI+MQ+HV V GKVRTD TYPAGFMDV+++ TNE+FRL YD KG+F +H + EEA +KL KV+ VQ G+KG+PY+ T+DGRTIRYPDPLI+ANDT+K+DL KI FIKFD G +VMVTGGR Sbjct: 1 MGRGPKKHLKRLAAPSHWMLXKLSGTYAPRPSAGPHXLRESLPLXVFLRNRLXYALCGREVKAIMMQQHVQVVGKVRTDTTYPAGFMDVITLEATNEHFRLAYDVKGKFAVHRISAEEAVYKLGKVKKVQLGKKGVPYVVTHDGRTIRYPDPLIRANDTVKIDLATGKIXSFIKFDTGRLVMVTGGR 187
BLAST of FC875605 vs. ExPASy Swiss-Prot
Match: RS4_HORSE (40S ribosomal protein S4 (Fragment) OS=Equus caballus GN=RPS4 PE=2 SV=1) HSP 1 Score: 252.292 bits (643), Expect = 1.743e-66 Identity = 121/167 (72.46%), Postives = 138/167 (82.63%), Query Frame = 2 Query: 158 LDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGG 658 LDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQR + +DGKVRTD TYPAGFMDV+SI KT ENFRL+YDTKGRF +H + EEAK+KLCKVR + G KGIP++ T+D RTIRYPDPLIK NDTI++DLE KITDFIKFD GN+ MVTGG Sbjct: 1 LDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGG 167
BLAST of FC875605 vs. ExPASy Swiss-Prot
Match: RS4_CAEEL (40S ribosomal protein S4 OS=Caenorhabditis elegans GN=rps-4 PE=1 SV=1) HSP 1 Score: 242.662 bits (618), Expect = 1.381e-63 Identity = 119/185 (64.32%), Postives = 139/185 (75.14%), Query Frame = 2 Query: 107 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGR 661 RG KKHLKRL AP HWMLDKLGG FA +P+ GPHK RE LPL L LRNRLKYAL Y E IL QR V VDGKVRT +P GFMDVV+I +TNE FR+LYDTKGR+ +H ++ EA FKLCKV+SV+ KG+P + T DGRTIRYPDP +K NDTI ++ KITD +KF+ GN+ VTGGR Sbjct: 2 RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTGGR 186
BLAST of FC875605 vs. ExPASy Swiss-Prot
Match: RS4_TETTH (40S ribosomal protein S4 OS=Tetrahymena thermophila PE=1 SV=1) HSP 1 Score: 209.92 bits (533), Expect = 9.922e-54 Identity = 108/187 (57.75%), Postives = 132/187 (70.59%), Query Frame = 2 Query: 104 ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQR--HVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGG 658 ARG KKHLKR+NAPK WML+KLGG +A +PS GPHK RE LPL ++L+ RL YAL R+V IL + +V VD KVR DK YP G MDVV I KT+++FR+LYDTKGRF L SL EEAK+KL KV + G IPYI T+D RTIR+P+P IK DT+K DL NKI +F + GN+ + G Sbjct: 1 ARGPKKHLKRINAPKSWMLNKLGGIWATRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEGNVFVDQKVRRDKGYPTGLMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRFPNPEIKIGDTLKYDLVNNKIENFAHLESGNVCYIQQG 187
BLAST of FC875605 vs. ExPASy Swiss-Prot
Match: RS4_ENCCU (40S ribosomal protein S4 OS=Encephalitozoon cuniculi GN=RPS4 PE=1 SV=1) HSP 1 Score: 162.925 bits (411), Expect = 1.391e-39 Identity = 81/187 (43.32%), Postives = 121/187 (64.71%), Query Frame = 2 Query: 101 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGR 661 M G + HLKR APK WMLDK GG FA P+SGPHK EC+PL ++ L+YA ++E+ IL ++++ V+G+VRT+ +P G DVVSI KT E+FR+LY+ +F LH + EEA ++L KV + ++ +GIPYI + G +IR+ DP I TIK+ E +K+ ++I ++ V+ G+ Sbjct: 1 MPTGHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSIILAEKNIKVNGRVRTNSHFPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKV-TKKYENQGIPYIVSSCGLSIRFCDPAIDLGYTIKISNETSKVIEYIVPGPDKVIFVSRGK 186
BLAST of FC875605 vs. ExPASy Swiss-Prot
Match: RS4E_METST (30S ribosomal protein S4e OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps4e PE=3 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 9.655e-33 Identity = 77/184 (41.85%), Postives = 107/184 (58.15%), Query Frame = 2 Query: 110 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGR 661 G +KHLKR APK W + K + K S+GPH E +PL++VLR+ L A RE IL VLVDG R + +P GFMDV+SIPK N+ FR+L D KGR L + ++++ FKL K+ + G +N GR I D K D + L++ E KI+D IKF+ G + ++TGG+ Sbjct: 5 GSRKHLKRFKAPKMWPIHKKEEVWTTKTSAGPHALEESIPLVMVLRDILGLAANSREAKIILNNSDVLVDGIPRKNHRFPVGFMDVISIPKINKTFRVLQDYKGRLVLKEIEEKDSTFKLVKILGKTTIKGGKTQLNLEGGRNI-IADDDYKTGDVLLLNIPEQKISDSIKFEEGALGLITGGK 187 The following BLAST results are available for this feature:
BLAST of FC875605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 103
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875605 ID=FC875605; Name=FC875605; organism=Citrus clementina; type=EST; length=680bpback to top |