FC875605

Overview
NameFC875605
Unique NameFC875605
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10275 contig Ccv1_Contig10275:1..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875605 vs. ExPASy Swiss-Prot
Match: RS4E_METAC (30S ribosomal protein S4e OS=Methanosarcina acetivorans GN=rps4e PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.326e-25
Identity = 64/180 (35.56%), Postives = 95/180 (52.78%), Query Frame = 2
Query:  122 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGR 661
            H KRL+ PK W + K G  +      GPH     LPL +++R+ LK     RE   IL +  VLVDG  R D  +P G  DV+++P  NE +R+L D KGR  LH L +     KLC++ +    + G   +N  DG  I   +      D++ L + + ++   +KF+VGN+ MV GG+
Sbjct:    3 HQKRLSVPKSWKVGKKGNKWISTTRPGPHSQARSLPLGIIIRDILKLVDNSREGKRILSEGKVLVDGIPRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLTLHKLNETNVN-KLCRINNKTTVKGGKFQLNLNDGTNIIGSNE-YGTKDSLILSIPDKQVVKHLKFEVGNLAMVVGGQ 180          
BLAST of FC875605 vs. ExPASy Swiss-Prot
Match: RS4E_METKA (30S ribosomal protein S4e OS=Methanopyrus kandleri GN=rps4e PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.674e-25
Identity = 68/204 (33.33%), Postives = 110/204 (53.92%), Query Frame = 2
Query:  110 GLKKHLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDP------LIKANDTIKLDLEEN------KITDFIKFDVGNIVMVTGGRTEVEL 676
            G K+H+KRL AP  W +  K GG FAP+P  GPH     +PL++++R+ L YA   RE   I+ +  + VDG VR +  +P G MDVV IP+T + +R++ +   R  +  + +EEA+ K+C++++  + + G   I  +DG+   +   DP      +    D++ L+L E       K+ D I F+ G  V    GR   E+
Sbjct:    7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREARKIITRGEIYVDGVVRKEPKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQITMHDGKNWLVEIEDPTDPKEDVYSVGDSLVLELPEPDSGESWKVVDHIPFEEGVWVYAMTGRHSGEV 210          
BLAST of FC875605 vs. ExPASy Swiss-Prot
Match: RS4E_DESK1 (30S ribosomal protein S4e OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps4e PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.156e-24
Identity = 64/192 (33.33%), Postives = 103/192 (53.65%), Query Frame = 2
Query:  110 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDPLIKANDT------IKLDLEENKITDFIKFDVGNIVMVTGGR 661
            G  +HLK +NAP++W + +    +  K S GPH     LPL++++R+ L YA T +E   ++ + +  +DG+VR D  +P G MDV+ I   N+ +R++        L  +  EEA FKLC++ +    + G   +N +DGR   IR  DP     DT      +KL +   +I D++    G I +V+GGR
Sbjct:    5 GGSRHLKAINAPRYWPILRKEYRWVVKSSPGPHPISRSLPLLILVRDMLGYAKTGKEARRLIAEGYFKIDGRVRRDYKFPVGVMDVIEIVGVNKYYRVIPVPTKVLGLIEISREEASFKLCRIENKTTVKNGHIQLNLHDGRNVLIRVNDPRNPVEDTYDTLGVLKLSIPVQQILDYVPLKEGVIAIVSGGR 196          
BLAST of FC875605 vs. ExPASy Swiss-Prot
Match: RS4E_METMA (30S ribosomal protein S4e OS=Methanosarcina mazei GN=rps4e PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.803e-24
Identity = 63/180 (35.00%), Postives = 94/180 (52.22%), Query Frame = 2
Query:  122 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGR 661
            H KRL+ PK W + + G  +      GPH     LPL L++R+ LK     RE   IL +  VLVDG  R D  +P G  DV+++P  NE +R+L D KGR  L+ L +     KLC++ +    + G   +N  DG  I   +      D++ L + +  +   +KF+VGN+ MV GG+
Sbjct:    3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSEGKVLVDGISRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLVLYKLNETNVN-KLCRINNKTTVKGGKIQLNLNDGTNILGSND-YGTKDSLILSIPDKHVVKHLKFEVGNLAMVIGGQ 180          
BLAST of FC875605 vs. ExPASy Swiss-Prot
Match: RS4E_PYRIL (30S ribosomal protein S4e OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps4e PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.193e-24
Identity = 66/183 (36.07%), Postives = 97/183 (53.01%), Query Frame = 2
Query:  122 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPL---IKANDTIKLDLEENKITDFIKFDVGNIVMVTGG 658
            HL+R  AP  W +  K+GG +  + S GPH     LPL +++R+ LKYA T RE   I+ + +V +DG +R D  +P G MDVV I  T E +R++ D K  + L  +  EEA  KL +V      + G   ++ +DGR +     +   IK  DT+  DL+   I   I F +G   +VT G
Sbjct:    3 HLRRTTAPYWWPIPRKIGGVWVVRSSPGPHSLAYSLPLAIIIRDVLKYAKTMREARYIISRGYVKIDGVIRKDYKFPVGLMDVVEIVPTGEIYRVVPDEKKYYALIPISSEEATLKLLRVEGKTAVKGGKLQLHFHDGRNLIVSQDVGRHIKTFDTVLYDLQNKNIKMHIPFKLGAYAVVTRG 185          
BLAST of FC875605 vs. ExPASy Swiss-Prot
Match: RS4E_METBF (30S ribosomal protein S4e OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps4e PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.193e-24
Identity = 64/185 (34.59%), Postives = 93/185 (50.27%), Query Frame = 2
Query:  122 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRTEVEL 676
            H KRL+ P+ W   K G  +      GPH     LPL +++R+ LK     RE   IL +  VLVDG  R D  +P G  DV+++P  NE +R+  D KGR  LH L       KLC++ +    + G   +N  DG  I   +      D++ L L + +I   ++F VGN+ MV GG+   E+
Sbjct:    3 HQKRLSIPRSWKAGKKGYKWVSTTRPGPHSQARSLPLGIIIRDILKLVDNSREGKRILSEGKVLVDGIPRKDLRFPVGLFDVITLPLVNETYRMFQDEKGRLALHKLNATNVN-KLCRINNKTTLKGGKVQLNLNDGTNILGSNE-YSTKDSLILSLPDKQIVKHLQFKVGNLAMVVGGQHSGEI 185          
BLAST of FC875605 vs. ExPASy Swiss-Prot
Match: RS4E_IGNH4 (30S ribosomal protein S4e OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps4e PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.193e-24
Identity = 70/199 (35.18%), Postives = 108/199 (54.27%), Query Frame = 2
Query:  101 MAR--GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLL-YDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDPL-------IKANDTIKLDLEENKITDFIKFDVGNIVMVTGGR 661
            MAR  G K+HLKRL AP  W + +    +A KP  GPH   E +PL++++R+ L YA T RE   ++ +  + VDG+VR D  +P G MDV+ I   +E +R++ Y  K    +  +  EEAK K+C++ +    + G   +N +DGR   IR  DP         K    + + + E +I D++ F+ G I +V  GR
Sbjct:    1 MARVGGGKRHLKRLAAPAFWPIHRKEAVWAVKPRPGPHPIEESIPLLILVRDVLGYAETSREARKLIAEGRIKVDGRVRKDYKFPVGAMDVIEIVGADEYYRMIPYPVKYLVPMR-IDAEEAKKKICRIENKVTVKGGHVQLNLHDGRNVLIRVEDPRNPVEAQEYKTLGGLLITVPEQEILDYVPFEEGVIAIVKSGR 198          
BLAST of FC875605 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAR (30S ribosomal protein S4e OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps4e PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.113e-23
Identity = 70/183 (38.25%), Postives = 95/183 (51.91%), Query Frame = 2
Query:  122 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT-IRYPD--PLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGG 658
            HL+R  AP  W +  K GG +  KPS GPH     LPL +V+R+ L+YA T RE   I+ + ++ VDG VR D  +P G MDV+ I  T E +R++ D    + L  +   EA  KL +V        G   ++ +DGR  I  PD    IK  DTI  DLE   I   I   +G + +VT G
Sbjct:    3 HLRRSLAPYWWPIPRKAGGVWVVKPSPGPHSFAYSLPLAIVIRDVLRYAKTLREARYIVSRGYIKVDGVVRKDYRFPVGLMDVIEIVPTGEVYRVVPDQDRYYNLLPIPSSEASLKLLRVEGKTTVNGGRLQLHFHDGRNLITSPDMGAKIKTFDTILYDLENKTIKTHIPMKLGVVAVVTHG 185          
BLAST of FC875605 vs. ExPASy Swiss-Prot
Match: RS4E_THENV (30S ribosomal protein S4e OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps4e PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.936e-23
Identity = 64/183 (34.97%), Postives = 97/183 (53.01%), Query Frame = 2
Query:  122 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPL---IKANDTIKLDLEENKITDFIKFDVGNIVMVTGG 658
            HL+R  +P  W +  K GG +A +PS GPH     +PL LV+R+ L+YA T RE   I+ + ++ VDG VR +  +P G MDVV I  T E +R++ D +  + L  +  EEA  KL +V      + G   ++ +DGR +  P      IK  D++  DL+   +   I   +G   +VT G
Sbjct:    3 HLRRTTSPYWWPIPRKAGGVWAVRPSPGPHSLAYSIPLALVIRDVLRYAKTLREARMIISRGYIKVDGVVRRNYKFPVGLMDVVEIVPTGEIYRVVPDERSYYALVPITSEEADLKLLRVEGKTAVKGGRLQVHFHDGRNLIMPAETARQIKTFDSVLYDLKARTVRSHIPMRLGVYAVVTHG 185          
BLAST of FC875605 vs. ExPASy Swiss-Prot
Match: RS4E_CALMQ (30S ribosomal protein S4e OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps4e PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.183e-22
Identity = 58/182 (31.87%), Postives = 95/182 (52.20%), Query Frame = 2
Query:  122 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDT---IKLDLEENKITDFIKFDVGNIVMVTGG 658
            HL+R  +P+ W +++ G  ++ KPS GPH +   +PL ++LR+   YA T RE   I+ + +V VDGKVR D  YP G MDV+ +   NE +R++ D     R   +   EA  K+C++      + G   +N +DGR I       +  +T   + ++LE+ K+ D+        V+   G
Sbjct:    3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGKGYVKVDGKVRRDYKYPVGLMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIEDKTMVKAGKIQLNLHDGRNIIVDQDEGRKYETLGSVVVNLEDGKLMDYYPMQPNQYVIAFNG 184          
The following BLAST results are available for this feature:
BLAST of FC875605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_METAC3.326e-2535.5630S ribosomal protein S4e OS=Methanosarcina acetiv... [more]
RS4E_METKA5.674e-2533.3330S ribosomal protein S4e OS=Methanopyrus kandleri... [more]
RS4E_DESK12.156e-2433.3330S ribosomal protein S4e OS=Desulfurococcus kamch... [more]
RS4E_METMA4.803e-2435.0030S ribosomal protein S4e OS=Methanosarcina mazei ... [more]
RS4E_PYRIL8.193e-2436.0730S ribosomal protein S4e OS=Pyrobaculum islandicu... [more]
RS4E_METBF8.193e-2434.5930S ribosomal protein S4e OS=Methanosarcina barker... [more]
RS4E_IGNH48.193e-2435.1830S ribosomal protein S4e OS=Ignicoccus hospitalis... [more]
RS4E_PYRAR3.113e-2338.2530S ribosomal protein S4e OS=Pyrobaculum arsenatic... [more]
RS4E_THENV6.936e-2334.9730S ribosomal protein S4e OS=Thermoproteus neutrop... [more]
RS4E_CALMQ1.183e-2231.8730S ribosomal protein S4e OS=Caldivirga maquilinge... [more]

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Properties
Property NameValue
Genbank descriptionC31405G07EF CTVClemen1 Citrus clementina cDNA clone C31405G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875605 ID=FC875605; Name=FC875605; organism=Citrus clementina; type=EST; length=680bp
GAATCAGAAACTAGGGTTTAGTCACCTTCTCACTCTTCTCGCGGAGCCAA
AGAGAACAGACAAGCAGCCGCAGCGAGGCAGCAGCTTCAAACTCACAAAA
ATGGCTAGAGGATTGAAGAAGCACTTGAAGAGGCTCAATGCCCCTAAGCA
CTGGATGCTTGACAAGCTTGGTGGTGCATTTGCACCTAAGCCATCATCTG
GTCCCCACAAGTCAAGGGAATGCTTGCCATTGATCCTTGTATTGCGAAAC
CGTTTGAAATATGCTCTCACATATCGTGAAGTTATTGCTATTCTGATGCA
ACGACATGTTCTTGTTGATGGGAAGGTTAGGACAGATAAGACCTACCCTG
CTGGTTTCATGGATGTTGTGTCAATTCCCAAGACCAACGAGAACTTCCGT
CTCCTTTATGACACCAAGGGTCGCTTCCGTCTCCATTCCCTCAGAGATGA
GGAGGCAAAATTCAAGCTTTGCAAAGTTAGATCAGTCCAGTTTGGCCAGA
AAGGTATCCCATACATCAACACCTATGATGGGCGTACCATCCGCTACCCT
GACCCACTCATCAAAGCCAATGATACCATCAAACTTGACTTAGAAGAGAA
CAAGATCACTGACTTCATCAAGTTTGATGTTGGGAATATTGTCATGGTCA
CTGGGGGTAGAACAGAGGTCGAGTTGGAAT
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