FC875605

Overview
NameFC875605
Unique NameFC875605
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875605 vs. ExPASy Swiss-Prot
Match: RS4E_SULAC (30S ribosomal protein S4e OS=Sulfolobus acidocaldarius GN=rps4e PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.222e-20
Identity = 63/188 (33.51%), Postives = 93/188 (49.47%), Query Frame = 2
Query:  122 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTI--------RYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGR 661
            H+ R  AP    + K    +  +  +GPHK +E +PL ++L+  LK   T RE   I+    VLVDGKVR D  YP G MDVV IP  +   R++ D        ++  E+AK+K  ++ +    + G+  +N  DGR I        +Y  P +    T+K++L E KIT       G   M+ GGR
Sbjct:    3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFDGKVLVDGKVRRDYKYPVGLMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIMNKTTLKSGVLQLNLEDGRNILLKGEELSQYNLPTL---TTLKIELPEQKITTAYTIKEGVYAMIIGGR 187          
BLAST of FC875605 vs. ExPASy Swiss-Prot
Match: RS4E_SULTO (30S ribosomal protein S4e OS=Sulfolobus tokodaii GN=rps4e PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.727e-19
Identity = 55/185 (29.73%), Postives = 93/185 (50.27%), Query Frame = 2
Query:  122 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND-----TIKLDLEENKITDFIKFDVGNIVMVTGGR 661
            H+ R  AP    L K    +  + + GPHK  E +PL L+L++ L  A T RE   ++++  ++VDG+VR D  +P G MDV+SIP ++  FR++ D         +  E+AK+K  ++ +    + G   +N  DGR I  P   +   +     T+K+++    I    +   G   ++ GGR
Sbjct:    3 HITRFEAPWFLNLSKKEYKWTIRANPGPHKLSESIPLALLLKHYLNVAETTREAKRLVVEGKIMVDGRVRKDYKFPVGLMDVISIPSSDLYFRIVPDNIKYLMPVKISKEDAKYKFVRIVNKTTNKNGNIQLNLEDGRNILIPKEKVPEMNYPTLTTLKIEIPSQNIIKSYELSEGKYAIIIGGR 187          
BLAST of FC875605 vs. ExPASy Swiss-Prot
Match: RS4_BIGNA (40S ribosomal protein S4 OS=Bigelowiella natans GN=RPS4 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.773e-18
Identity = 51/187 (27.27%), Postives = 93/187 (49.73%), Query Frame = 2
Query:  101 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGR 661
            MA+G+KKH KR+++       K  G F  K SSGPH   + + L+ +++     A   +E   ++    + V+GK      +P   MD +S P  N+++R+L    G+  ++ +   E   K+CKV  +         I T D R ++     IK  D++ +    ++I   +KF+VG++ ++T G+
Sbjct:    1 MAKGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEAQKVVKTGFLYVNGKKCLSHKFPISLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLRELKINYAKIKVEDSLLIKTINDEIVYALKFEVGSLCLITRGK 187          
BLAST of FC875605 vs. ExPASy Swiss-Prot
Match: RS4E_NANEQ (30S ribosomal protein S4e OS=Nanoarchaeum equitans GN=rps4e PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.773e-18
Identity = 62/185 (33.51%), Postives = 92/185 (49.73%), Query Frame = 2
Query:  113 LKKHLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCK-VRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGR 661
            +K+HL+ L  P+ W +  K  G +  KPS GPH     +P+ + LR+ L  A   REV  +L    VLVDG+   D  +P G  DV++IP+ NE +R+L D +G+  L  +  EEA  K  K +R V      I Y  T DGRT    D   K +  +  ++   KI + I  +      +  G+
Sbjct:    5 IKRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYLLNNGKVLVDGRPIKDYKFPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYGKIIRKVSVRGGKIQYTLT-DGRTF-LGDNSYKTHYGVVYEIPNFKIREVIPLEKDRKAYIIRGK 187          
BLAST of FC875605 vs. ExPASy Swiss-Prot
Match: RS4E_THEAC (30S ribosomal protein S4e OS=Thermoplasma acidophilum GN=rps4e PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.334e-17
Identity = 56/177 (31.64%), Postives = 85/177 (48.02%), Query Frame = 2
Query:  128 KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGG 658
            KRL   +   + +    + P P+ G H   + + L+ ++R+ LK +   RE   IL    V VDGK   +K +  GFMDV+ I    E++R++Y+ +G   L     E A  KL KVRS          + T+DGRT    D   K  D   + + + KI++ IK   GN   +T G
Sbjct:    6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVIEI--NGESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITDDKSKKVGDVWAVSVPDMKISEIIKMQPGNKAYITAG 180          
BLAST of FC875605 vs. ExPASy Swiss-Prot
Match: RS4E_THEVO (30S ribosomal protein S4e OS=Thermoplasma volcanium GN=rps4e PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.427e-17
Identity = 54/177 (30.51%), Postives = 88/177 (49.72%), Query Frame = 2
Query:  128 KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGG 658
            KRL  P+   + +    + P P  G HK+   + L+ ++R+ L+ +   RE   IL    V VDGKV  ++ +  GFMDV+ I  + E++R++Y+ +G   L S   + A  K  +V++          +  +DGR +   D  I   D +   L + KIT+ IK   GN   +TGG
Sbjct:    6 KRLMVPRTVKIPRKTYFWGPTPLPGRHKADHSVTLLTIIRDYLRLSDKEREATRILANGLVKVDGKVVKERKFGVGFMDVIEI--SGESYRVVYNNQGALVLVSESKDRANMKPLQVKNKVIAPGNKIQLGFHDGRVMVTEDRSISVGDVVIASLPDMKITEIIKMQPGNKAFITGG 180          
BLAST of FC875605 vs. ExPASy Swiss-Prot
Match: RS4E_METS5 (30S ribosomal protein S4e OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps4e PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.655e-16
Identity = 55/185 (29.73%), Postives = 88/185 (47.57%), Query Frame = 2
Query:  122 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDP-----LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGR 661
            H+ RL AP      K    +  + S GPH   + +PL L+LR+ L +  + +E   I+    VLVDG+VR D  YP G MDV++IP  +   R++ D     +   + +EE+KFKL ++ +    + G+   N  DGR +           +    T+K+ +   +I     F     VM  GG+
Sbjct:    3 HITRLEAPWFLRASKKEYKWTVRASPGPHPLGKSIPLGLLLRDYLAFTSSLKESKKIISDGKVLVDGRVRRDYKYPVGLMDVIAIPHADLYLRIVPDRARLLKPVKISEEESKFKLVRLLNKTLVKGGLLQFNLEDGRNLLISKESTEMFKLPTLTTLKISIPNQEILGVYGFKENVYVMAVGGK 187          
BLAST of FC875605 vs. ExPASy Swiss-Prot
Match: RS4E_HALSA (30S ribosomal protein S4e OS=Halobacterium salinarium GN=rps4e PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.822e-16
Identity = 51/183 (27.87%), Postives = 86/183 (46.99%), Query Frame = 2
Query:  113 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGR 661
            +  H KRL+ PK W +++    F  K  +GPH     +PL++VLR+ L+Y     E    +    VLV+G    D   P G  D+++ P  +E +R+  D  GR  L  +  + A  KL KV        G   +N +DG  +   +      D++ +D + N+I    +++ G +V    G+
Sbjct:    1 MTNHQKRLSVPKSWPVERKTETFTAKAGAGPH-GESGVPLVVVLRDVLEYVDDTSEAQYAINTDGVLVNGDSVGDVNRPIGMFDILAFPDRDEYYRVFPDEGGRLGLTEIDADAAGSKLNKVTDKTTVSGGRTQLNFHDGSNLALDEDAYAGGDSVVVDTDTNEIVAHFQYEEGALVTAVAGQ 182          
BLAST of FC875605 vs. ExPASy Swiss-Prot
Match: RS4E_HALS3 (30S ribosomal protein S4e OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.822e-16
Identity = 51/183 (27.87%), Postives = 86/183 (46.99%), Query Frame = 2
Query:  113 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGR 661
            +  H KRL+ PK W +++    F  K  +GPH     +PL++VLR+ L+Y     E    +    VLV+G    D   P G  D+++ P  +E +R+  D  GR  L  +  + A  KL KV        G   +N +DG  +   +      D++ +D + N+I    +++ G +V    G+
Sbjct:    1 MTNHQKRLSVPKSWPVERKTETFTAKAGAGPH-GESGVPLVVVLRDVLEYVDDTSEAQYAINTDGVLVNGDSVGDVNRPIGMFDILAFPDRDEYYRVFPDEGGRLGLTEIDADAAGSKLNKVTDKTTVSGGRTQLNFHDGSNLALDEDAYAGGDSVVVDTDTNEIVAHFQYEEGALVTAVAGQ 182          
BLAST of FC875605 vs. ExPASy Swiss-Prot
Match: RS4E_PICTO (30S ribosomal protein S4e OS=Picrophilus torridus GN=rps4e PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.814e-16
Identity = 53/177 (29.94%), Postives = 90/177 (50.85%), Query Frame = 2
Query:  128 KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGG 658
            K + AP+   + +    +A     G HK    +PL++ LR+ LK     RE+  IL    V+VDGKV  ++    GFMD +++  +  ++ + YD KG+  +     E    KL +V+   + + G   I+ +DG T+      IK  D++ + + + +I D +KF  GN V +TGG
Sbjct:    6 KIMMAPRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSLVMVDGKVVKERRRGIGFMDTLTV--SGNDYLVSYDRKGKLVILPKPGETKGLKLLRVKGKTYVKGGRIQISFHDGSTMVTDRKDIKNGDSVLVKIPKKEIVDVLKFAPGNRVFITGG 180          
The following BLAST results are available for this feature:
BLAST of FC875605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_SULAC3.222e-2033.5130S ribosomal protein S4e OS=Sulfolobus acidocalda... [more]
RS4E_SULTO2.727e-1929.7330S ribosomal protein S4e OS=Sulfolobus tokodaii G... [more]
RS4_BIGNA8.773e-1827.2740S ribosomal protein S4 OS=Bigelowiella natans GN... [more]
RS4E_NANEQ8.773e-1833.5130S ribosomal protein S4e OS=Nanoarchaeum equitans... [more]
RS4E_THEAC3.334e-1731.6430S ribosomal protein S4e OS=Thermoplasma acidophi... [more]
RS4E_THEVO7.427e-1730.5130S ribosomal protein S4e OS=Thermoplasma volcaniu... [more]
RS4E_METS51.655e-1629.7330S ribosomal protein S4e OS=Metallosphaera sedula... [more]
RS4E_HALSA2.822e-1627.8730S ribosomal protein S4e OS=Halobacterium salinar... [more]
RS4E_HALS32.822e-1627.8730S ribosomal protein S4e OS=Halobacterium salinar... [more]
RS4E_PICTO4.814e-1629.9430S ribosomal protein S4e OS=Picrophilus torridus ... [more]

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Properties
Property NameValue
Genbank descriptionC31405G07EF CTVClemen1 Citrus clementina cDNA clone C31405G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875605 ID=FC875605; Name=FC875605; organism=Citrus clementina; type=EST; length=680bp
GAATCAGAAACTAGGGTTTAGTCACCTTCTCACTCTTCTCGCGGAGCCAA
AGAGAACAGACAAGCAGCCGCAGCGAGGCAGCAGCTTCAAACTCACAAAA
ATGGCTAGAGGATTGAAGAAGCACTTGAAGAGGCTCAATGCCCCTAAGCA
CTGGATGCTTGACAAGCTTGGTGGTGCATTTGCACCTAAGCCATCATCTG
GTCCCCACAAGTCAAGGGAATGCTTGCCATTGATCCTTGTATTGCGAAAC
CGTTTGAAATATGCTCTCACATATCGTGAAGTTATTGCTATTCTGATGCA
ACGACATGTTCTTGTTGATGGGAAGGTTAGGACAGATAAGACCTACCCTG
CTGGTTTCATGGATGTTGTGTCAATTCCCAAGACCAACGAGAACTTCCGT
CTCCTTTATGACACCAAGGGTCGCTTCCGTCTCCATTCCCTCAGAGATGA
GGAGGCAAAATTCAAGCTTTGCAAAGTTAGATCAGTCCAGTTTGGCCAGA
AAGGTATCCCATACATCAACACCTATGATGGGCGTACCATCCGCTACCCT
GACCCACTCATCAAAGCCAATGATACCATCAAACTTGACTTAGAAGAGAA
CAAGATCACTGACTTCATCAAGTTTGATGTTGGGAATATTGTCATGGTCA
CTGGGGGTAGAACAGAGGTCGAGTTGGAAT
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