FC875606

Overview
NameFC875606
Unique NameFC875606
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length461
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875606_ssr17 microsatellite FC875606_ssr17:17..32. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10211 contig Ccv1_Contig10211:7..467. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875606 vs. ExPASy Swiss-Prot
Match: HTPG_EXIS2 (Chaperone protein htpG OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=htpG PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 8.714e-20
Identity = 51/101 (50.50%), Postives = 73/101 (72.28%), Query Frame = 3
Query:  126 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEF 428
            ET  F+AE  +LL ++I++ Y++KEIFLRELISN+SDA+DKI +++LTD++    +    I I P+K    L + D+GIGMTK +L  NLGTIA+SG+  F
Sbjct:    2 ETKQFKAESKRLLEMMIHSIYTHKEIFLRELISNASDAMDKIYYKALTDETITFDKDAYKITIEPNKETRQLILRDTGIGMTKDELEENLGTIAKSGSLAF 102          
BLAST of FC875606 vs. ExPASy Swiss-Prot
Match: HTPG_NITHX (Chaperone protein htpG OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=htpG PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.138e-19
Identity = 46/105 (43.81%), Postives = 82/105 (78.10%), Query Frame = 3
Query:  126 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKL--DAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFME 434
            E+  F+A++ +LL +++++ YS+K++FLRELISN++DA +++R+++++D + L  DA+P++ I I  D     L++ D+GIGM++ ++V+ LGTIARSGTK F+E
Sbjct:   12 ESRVFEADVAKLLQMMVHSVYSDKDVFLRELISNAADACERLRYDAISDPALLADDARPQIAITI--DAERRQLTVDDNGIGMSRDEMVDALGTIARSGTKAFIE 114          
BLAST of FC875606 vs. ExPASy Swiss-Prot
Match: HTPG_NITWN (Chaperone protein htpG OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=htpG PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.941e-19
Identity = 46/107 (42.99%), Postives = 77/107 (71.96%), Query Frame = 3
Query:  126 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAA 446
            E+  F+A++ +LL +++++ YS+K++FLRELISN++DA +++R+E+++D + L  +    I I  D     L++ D+GIGM + +LV+ LGTIARSGTK F+E   A
Sbjct:   12 ESRVFEADVAKLLQMMVHSVYSDKDVFLRELISNAADACERLRYEAISDPALLTDETRPRISITIDAERRQLAVEDNGIGMGRDELVDALGTIARSGTKAFIEQAEA 118          
BLAST of FC875606 vs. ExPASy Swiss-Prot
Match: HTPG_RHIEC (Chaperone protein htpG OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=htpG PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.535e-19
Identity = 46/106 (43.40%), Postives = 75/106 (70.75%), Query Frame = 3
Query:  126 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 443
            E+  F+A++ +LL +++++ YS+K +FLRELISN +DA +K+R+E++   S L A  E  I +  D+ +  L + D+GIGM + +++  LGTIARSGT+ FME +A
Sbjct:   10 ESHVFEADVARLLHMMVHSVYSDKGVFLRELISNGADACEKLRYEAIETPSLLAADAESRIMLRLDEESRQLVVEDNGIGMRRDEMIEALGTIARSGTRAFMERIA 115          
BLAST of FC875606 vs. ExPASy Swiss-Prot
Match: HS904_HUMAN (Putative heat shock protein HSP 90-alpha A4 OS=Homo sapiens GN=HSP90AA4P PE=5 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.803e-18
Identity = 45/68 (66.18%), Postives = 55/68 (80.88%), Query Frame = 3
Query:  258 ESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 461
            ESLTD SKLD+  E  I +IP+K + TL+I+D+GIGMTKADL+NNLGTI +S TK FME L AGAD+S
Sbjct:    2 ESLTDPSKLDSGKEPHISLIPNKQDRTLTIVDTGIGMTKADLINNLGTITKSETKVFMEVLQAGADIS 69          
The following BLAST results are available for this feature:
BLAST of FC875606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
HTPG_EXIS28.714e-2050.50Chaperone protein htpG OS=Exiguobacterium sibiricu... [more]
HTPG_NITHX1.138e-1943.81Chaperone protein htpG OS=Nitrobacter hamburgensis... [more]
HTPG_NITWN1.941e-1942.99Chaperone protein htpG OS=Nitrobacter winogradskyi... [more]
HTPG_RHIEC2.535e-1943.40Chaperone protein htpG OS=Rhizobium etli (strain C... [more]
HS904_HUMAN2.803e-1866.18Putative heat shock protein HSP 90-alpha A4 OS=Hom... [more]

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Properties
Property NameValue
Genbank descriptionC31405G08EF CTVClemen1 Citrus clementina cDNA clone C31405G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875606 ID=FC875606; Name=FC875606; organism=Citrus clementina; type=EST; length=461bp
AACTCTCTGCGTTTTTTCTCTCTCTCTCTCTCTGTCTCTCGTTCGCTTCC
AAAACCCCTAGTTTATAATTCAGAAGAGATCGTTTTTTGGTTGAACGGCA
GGTCGTTTCGATGGCATCAGAGACAGAGACGTTTGCCTTTCAGGCTGAGA
TCAACCAGTTGTTGAGTTTGATCATCAACACCTTTTACAGCAACAAGGAG
ATCTTTCTTCGTGAGCTCATCAGCAACTCCTCCGATGCATTGGATAAGAT
CAGATTTGAAAGCTTGACAGACAAGAGCAAGCTAGATGCCCAACCAGAGC
TTTTCATCCACATTATCCCTGATAAGACCAACAACACTTTGTCTATTATT
GACAGTGGTATTGGCATGACTAAGGCTGATTTGGTGAACAACCTTGGTAC
AATTGCTAGGTCTGGGACCAAAGAGTTCATGGAGGCATTGGCTGCTGGGG
CGGATGTGAGC
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