FC875609

Overview
NameFC875609
Unique NameFC875609
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: GBB4_RAT (Guanine nucleotide-binding protein subunit beta-4 OS=Rattus norvegicus GN=Gnb4 PE=2 SV=4)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 43/137 (31.39%), Postives = 61/137 (44.53%), Query Frame = 3
Query:  231 SVSDLPRTEANV-----LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRS 626
            S+ +L   E NV     L GH G +   RF  DG    S G D T  LW+   G    T+  H  +V  + ++PD    +S   D     WD+  G   + F GH S++NAV F       A+   D + R +D R+
Sbjct:  122 SIYNLKTREGNVRVSRELPGHTGYLSCCRFLDDGQIITSSG-DTTCALWDIETGQQTTTFTGHSGDVMSLSLSPDLKTFVSGACDASSKLWDIRDGMCRQSFTGHISDINAVSFFPSGYAFATGSDDATCRLFDLRA 257          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: GBB4_MOUSE (Guanine nucleotide-binding protein subunit beta-4 OS=Mus musculus GN=Gnb4 PE=2 SV=4)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 43/137 (31.39%), Postives = 61/137 (44.53%), Query Frame = 3
Query:  231 SVSDLPRTEANV-----LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRS 626
            S+ +L   E NV     L GH G +   RF  DG    S G D T  LW+   G    T+  H  +V  + ++PD    +S   D     WD+  G   + F GH S++NAV F       A+   D + R +D R+
Sbjct:  122 SIYNLKTREGNVRVSRELPGHTGYLSCCRFLDDGQIITSSG-DTTCALWDIETGQQTTTFTGHSGDVMSLSLSPDLKTFVSGACDASSKLWDIRDGMCRQSFTGHISDINAVSFFPSGYAFATGSDDATCRLFDLRA 257          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: GBB1_RAT (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Rattus norvegicus GN=Gnb1 PE=1 SV=4)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 43/137 (31.39%), Postives = 61/137 (44.53%), Query Frame = 3
Query:  231 SVSDLPRTEANV-----LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRS 626
            S+ +L   E NV     L GH G +   RF  D     S G D T  LW+   G    T+  H  +V  + + PD    +S   D     WDV  G   + F GHES++NA+ F    +  A+   D + R +D R+
Sbjct:  122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: GBB1_PONAB (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Pongo abelii GN=GNB1 PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 43/137 (31.39%), Postives = 61/137 (44.53%), Query Frame = 3
Query:  231 SVSDLPRTEANV-----LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRS 626
            S+ +L   E NV     L GH G +   RF  D     S G D T  LW+   G    T+  H  +V  + + PD    +S   D     WDV  G   + F GHES++NA+ F    +  A+   D + R +D R+
Sbjct:  122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: GBB1_MOUSE (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Mus musculus GN=Gnb1 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 43/137 (31.39%), Postives = 61/137 (44.53%), Query Frame = 3
Query:  231 SVSDLPRTEANV-----LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRS 626
            S+ +L   E NV     L GH G +   RF  D     S G D T  LW+   G    T+  H  +V  + + PD    +S   D     WDV  G   + F GHES++NA+ F    +  A+   D + R +D R+
Sbjct:  122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: GBB1_HUMAN (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Homo sapiens GN=GNB1 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 43/137 (31.39%), Postives = 61/137 (44.53%), Query Frame = 3
Query:  231 SVSDLPRTEANV-----LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRS 626
            S+ +L   E NV     L GH G +   RF  D     S G D T  LW+   G    T+  H  +V  + + PD    +S   D     WDV  G   + F GHES++NA+ F    +  A+   D + R +D R+
Sbjct:  122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: GBB1_DANRE (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Danio rerio GN=gnb1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 43/137 (31.39%), Postives = 61/137 (44.53%), Query Frame = 3
Query:  231 SVSDLPRTEANV-----LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRS 626
            S+ +L   E NV     L GH G +   RF  D     S G D T  LW+   G    T+  H  +V  + + PD    +S   D     WDV  G   + F GHES++NA+ F    +  A+   D + R +D R+
Sbjct:  122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFAGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: GBB1_CANFA (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Canis familiaris GN=GNB1 PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 43/137 (31.39%), Postives = 61/137 (44.53%), Query Frame = 3
Query:  231 SVSDLPRTEANV-----LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRS 626
            S+ +L   E NV     L GH G +   RF  D     S G D T  LW+   G    T+  H  +V  + + PD    +S   D     WDV  G   + F GHES++NA+ F    +  A+   D + R +D R+
Sbjct:  122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: GBB1_BOVIN (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Bos taurus GN=GNB1 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 43/137 (31.39%), Postives = 61/137 (44.53%), Query Frame = 3
Query:  231 SVSDLPRTEANV-----LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRS 626
            S+ +L   E NV     L GH G +   RF  D     S G D T  LW+   G    T+  H  +V  + + PD    +S   D     WDV  G   + F GHES++NA+ F    +  A+   D + R +D R+
Sbjct:  122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: PRP46_CANGA (Pre-mRNA-splicing factor PRP46 OS=Candida glabrata GN=PRP46 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11
Identity = 38/122 (31.15%), Postives = 59/122 (48.36%), Query Frame = 3
Query:  264 VLKGHEGAVLAARFNGDGNYCLSCGK-DRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRS 626
            V+ GH G V     +   N   + G  D+TI++WN   G    T K H   VRD+ ++  +  + S   D+ +  WD+     IR + GH S V+ V  +    VV +AG D  ++ WD R+
Sbjct:  110 VIHGHHGWVRCIAMDKVDNEWFATGSNDKTIKIWNLASGKLKVTLKAHDMTVRDLAISNRHPYMFSVSEDKTVKCWDLEKNTAIRNYHGHLSGVHTVDIHPTVDVVVTAGRDSVVKVWDIRT 231          
The following BLAST results are available for this feature:
BLAST of FC875609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
GBB4_RAT4.745e-1131.39Guanine nucleotide-binding protein subunit beta-4 ... [more]
GBB4_MOUSE4.745e-1131.39Guanine nucleotide-binding protein subunit beta-4 ... [more]
GBB1_RAT4.745e-1131.39Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB1_PONAB4.745e-1131.39Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB1_MOUSE4.745e-1131.39Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB1_HUMAN4.745e-1131.39Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB1_DANRE4.745e-1131.39Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB1_CANFA4.745e-1131.39Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB1_BOVIN4.745e-1131.39Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
PRP46_CANGA6.198e-1131.15Pre-mRNA-splicing factor PRP46 OS=Candida glabrata... [more]

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Properties
Property NameValue
Genbank descriptionC31405G12EF CTVClemen1 Citrus clementina cDNA clone C31405G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875609 ID=FC875609; Name=FC875609; organism=Citrus clementina; type=EST; length=688bp
GGAGACATGACAAATCGCTATATCACTATATCAAATCAGGAACCTAAGTT
AACAATCAATGTAATCTTTGGTTTTTGCTAATAATTACATAAAGATTCAG
GGGCTCCAACTTTATTTACTGTACTTTAAAAGCAAAATAACAATAAAAGC
CCTCAATTTCGAATTGTTTATGCTTTTTCCATCGCAACGGCGCACGGTAA
CTCGTTCCCGCTCAAAGAAGCAAAGAGATGAGCGTATCCGATCTGCCGAG
GACAGAGGCTAACGTGCTCAAGGGCCACGAAGGCGCAGTTTTAGCCGCTC
GGTTCAACGGCGACGGTAATTATTGTCTGAGTTGCGGCAAGGACCGCACC
ATCCGCTTGTGGAATCCTCACCGCGGGATTCACATCAAGACCTACAAACC
CCACGGCCGCGAAGTCCGCGACGTCCACGTTACCCCAGACAACTCGAAGT
TGATATCTTGTGGCGGTGATCGGCAAATCTTTTATTGGGATGTTTCGACT
GGTCGTGTTATTCGGAAGTTTCGTGGCCACGAAAGCGAGGTGAATGCAGT
AAAGTTTAATGAGTATTCATCAGTGGTAGCATCAGCCGGCTATGATCAAT
CCTTGCGAGCTTGGGACTGTCGATCACATAGCACTGAGCCTATTCAGATT
ATTGATACTTTTCAAGACAGTGTGATGTCTGTTTGCTT
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