FC875609

Overview
NameFC875609
Unique NameFC875609
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: NUDFA_NEUCR (Nuclear distribution protein pac-1a OS=Neurospora crassa GN=pac-1a PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11
Identity = 48/143 (33.57%), Postives = 67/143 (46.85%), Query Frame = 3
Query:  225 EMSVSDLPRTEANVLKGHEGAVLAARFNGD-GNYCL-SCGKDRTIRLWNPHRGI-HIKTYKPHGREVRDVHVTPDNSKL-ISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRSHSTEP 641
            +  + +L RT    +KGH  AVL   + G  GN  L SC  D TI+LW+P     +I+T   H   V  V   P +  L +S   D+ +  WDVSTG  ++  RGH   V  V  +     + S   D + R WD    + EP
Sbjct:  142 DWELGELERT----IKGHTKAVLDVDYGGPRGNTLLASCSSDLTIKLWDPLDSYKNIRTLPGHDHSVSAVRFIPGSGNLLVSASRDKTLRIWDVSTGYCVKTLRGHAEWVRDVCPSLDGKYILSTSDDYTSRLWDVTITNPEP 280          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: WSB1_XENTR (WD repeat and SOCS box-containing protein 1 OS=Xenopus tropicalis GN=wsb1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 39/119 (32.77%), Postives = 62/119 (52.10%), Query Frame = 3
Query:  267 LKGHEGAVLAARFNGDGNYCL-SCGKDRTIRLWN-PHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWD 617
            L  H   V    F  DG+  L S  +D+T+R+W+    G  +K  + H   V     +PD+S L S G  + +F WD+    +IRK  GH ++V A +F+   +++A+A YD  +  WD
Sbjct:  166 LMDHTEVVRDLTFAPDGSLILVSASRDKTLRVWDLKDDGNMMKVLRGHQNWVYCCAFSPDSSMLCSVGAGKAVFLWDMDKYTMIRKLDGHYNDVVACEFSPDGALLATASYDTRVYVWD 284          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: WDR61_XENTR (WD repeat-containing protein 61 OS=Xenopus tropicalis GN=wdr61 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 32/120 (26.67%), Postives = 57/120 (47.50%), Query Frame = 3
Query:  261 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDC 620
            + L+GH   + +  F+ D    ++   D  I+++         T   HG  V +V  +PD++  +S   D+ +  WDVS    +  F  H+ +V  VK+N+  S + S   DQ +  +DC
Sbjct:  184 HTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYEVQHASLAATLSGHGSWVLNVAFSPDDTHFVSSSSDKSVKVWDVSARTCVHTFLDHQDQVWGVKYNKNGSKIVSVADDQEIHVYDC 303          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: WDR61_DANRE (WD repeat-containing protein 61 OS=Danio rerio GN=wdr61 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 33/120 (27.50%), Postives = 60/120 (50.00%), Query Frame = 3
Query:  261 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDC 620
            + L+GH   + +  F+ D    ++   D  I++++        T   HG  V  V  +PD++  +S   D+ I  WD S+   +  F  H+ +V +VK+N   S + SAG D+++  +DC
Sbjct:  184 HTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHGSWVLSVAFSPDDTHFVSSSSDKSIKVWDTSSRSCVNTFFDHQDQVWSVKYNPTGSKIVSAGDDRAIHIYDC 303          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: GBLP_HYDAT (Guanine nucleotide-binding protein subunit beta-like protein OS=Hydra attenuata GN=RACK1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 35/120 (29.17%), Postives = 63/120 (52.50%), Query Frame = 3
Query:  267 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWD-VSTGRVIRKFRGHESEVNAVKF--NEYSSVVASAGYDQSLRAWD 617
            L GH   V     + DG + LSC  D+T+RLW+ ++GI  K +  H ++V  V  + DN +++S   D  I  W+ +   +   +   H   V+ V+F  N  + ++ S G+D+ ++ W+
Sbjct:   59 LTGHNHFVSDVVLSSDGQFALSCSWDKTLRLWDLNQGITTKQFVGHTKDVLSVAFSADNRQIVSGSRDNTIKLWNTLGQCKYTIQDESHSEWVSCVRFSPNTQNPIIVSCGWDKMVKVWN 178          
The following BLAST results are available for this feature:
BLAST of FC875609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
NUDFA_NEUCR6.198e-1133.57Nuclear distribution protein pac-1a OS=Neurospora ... [more]
WSB1_XENTR8.094e-1132.77WD repeat and SOCS box-containing protein 1 OS=Xen... [more]
WDR61_XENTR8.094e-1126.67WD repeat-containing protein 61 OS=Xenopus tropica... [more]
WDR61_DANRE8.094e-1127.50WD repeat-containing protein 61 OS=Danio rerio GN=... [more]
GBLP_HYDAT8.094e-1129.17Guanine nucleotide-binding protein subunit beta-li... [more]

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Properties
Property NameValue
Genbank descriptionC31405G12EF CTVClemen1 Citrus clementina cDNA clone C31405G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875609 ID=FC875609; Name=FC875609; organism=Citrus clementina; type=EST; length=688bp
GGAGACATGACAAATCGCTATATCACTATATCAAATCAGGAACCTAAGTT
AACAATCAATGTAATCTTTGGTTTTTGCTAATAATTACATAAAGATTCAG
GGGCTCCAACTTTATTTACTGTACTTTAAAAGCAAAATAACAATAAAAGC
CCTCAATTTCGAATTGTTTATGCTTTTTCCATCGCAACGGCGCACGGTAA
CTCGTTCCCGCTCAAAGAAGCAAAGAGATGAGCGTATCCGATCTGCCGAG
GACAGAGGCTAACGTGCTCAAGGGCCACGAAGGCGCAGTTTTAGCCGCTC
GGTTCAACGGCGACGGTAATTATTGTCTGAGTTGCGGCAAGGACCGCACC
ATCCGCTTGTGGAATCCTCACCGCGGGATTCACATCAAGACCTACAAACC
CCACGGCCGCGAAGTCCGCGACGTCCACGTTACCCCAGACAACTCGAAGT
TGATATCTTGTGGCGGTGATCGGCAAATCTTTTATTGGGATGTTTCGACT
GGTCGTGTTATTCGGAAGTTTCGTGGCCACGAAAGCGAGGTGAATGCAGT
AAAGTTTAATGAGTATTCATCAGTGGTAGCATCAGCCGGCTATGATCAAT
CCTTGCGAGCTTGGGACTGTCGATCACATAGCACTGAGCCTATTCAGATT
ATTGATACTTTTCAAGACAGTGTGATGTCTGTTTGCTT
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