FC875609

Overview
NameFC875609
Unique NameFC875609
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: KTNB1_MOUSE (Katanin p80 WD40-containing subunit B1 OS=Mus musculus GN=Katnb1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.688e-14
Identity = 41/140 (29.29%), Postives = 72/140 (51.43%), Query Frame = 3
Query:  201 LVPAQRSKEMSVSDLPRTEA-NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWD 617
            +V   +S  + V DL   +    L GH+  + +  F+  G +  S  +D  I+LW+  R   +  Y+ H + VR +  +PD   L S   D  +  WD++ G+++ +F GH   VN V+F+    ++AS   D+++R WD
Sbjct:   78 IVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWD 217          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: KTNB1_HUMAN (Katanin p80 WD40-containing subunit B1 OS=Homo sapiens GN=KATNB1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.688e-14
Identity = 41/140 (29.29%), Postives = 72/140 (51.43%), Query Frame = 3
Query:  201 LVPAQRSKEMSVSDLPRTEA-NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWD 617
            +V   +S  + V DL   +    L GH+  + +  F+  G +  S  +D  I+LW+  R   +  Y+ H + VR +  +PD   L S   D  +  WD++ G+++ +F GH   VN V+F+    ++AS   D+++R WD
Sbjct:   78 IVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWD 217          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: NUDF_USTMA (Nuclear distribution protein PAC1 OS=Ustilago maydis GN=PAC1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.989e-14
Identity = 44/139 (31.65%), Postives = 67/139 (48.20%), Query Frame = 3
Query:  225 EMSVSDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGI-HIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRSHSTE 638
            +    D  RT    LKGH  AV    F+  GNY LSC  D +I++W+ +    +IKT + H   V  V   P +  ++S   D+ I  W+ STG   +  +GH   V +   ++ +  + S   DQ+ R WD  S  T+
Sbjct:  150 DWETGDFERT----LKGHTKAVQDVDFDSKGNYVLSCSSDLSIKVWDANNDYKNIKTLQGHDHSVSSVRFLPGDDYIVSASRDKTIKIWEFSTGFCTKTLQGHAEWVRSAIPSDDAKWLVSCSTDQTARVWDVSSGETK 284          

HSP 2 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 36/105 (34.29%), Postives = 53/105 (50.48%), Query Frame = 3
Query:  267 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVA 581
            L+GH+ +V + RF    +Y +S  +D+TI++W    G   KT + H   VR    + D   L+SC  D+    WDVS+G    + RGHE  V    F   +S  A
Sbjct:  203 LQGHDHSVSSVRFLPGDDYIVSASRDKTIKIWEFSTGFCTKTLQGHAEWVRSAIPSDDAKWLVSCSTDQTARVWDVSSGETKVELRGHEHVVEVAIFAPVASYAA 307          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: KTNB1_STRPU (Katanin p80 WD40-containing subunit B1 OS=Strongylocentrotus purpuratus GN=KATNB1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.989e-14
Identity = 39/140 (27.86%), Postives = 70/140 (50.00%), Query Frame = 3
Query:  201 LVPAQRSKEMSVSDL-PRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWD 617
            +V   +S  M + DL P      L GH  ++    F+  G +  S   D  ++LW+  R   I TYK H  +V  +  +PD   L++   D  I  WD++ G++ ++F+ H   V  ++F+    ++AS   D++++ WD
Sbjct:   74 VVAGSQSGTMKIYDLEPAKIVRTLTGHRNSIRCMDFHPFGEFVASGSTDTNVKLWDVRRKGCIYTYKGHSDQVNMIKFSPDGKWLVTASEDTTIKLWDLTMGKLFQEFKNHTGGVTGIEFHPNEFLLASGSSDRTVQFWD 213          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: NUDF_CRYNE (Nuclear distribution protein PAC1 OS=Cryptococcus neoformans GN=PAC1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.022e-13
Identity = 45/139 (32.37%), Postives = 66/139 (47.48%), Query Frame = 3
Query:  225 EMSVSDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNP-HRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRSHSTE 638
            +    D+ RT    LKGH  AV+   F+  G    +C  D T++LW+  ++  ++KT   H   V  V   PD   L+S   D+ I  W VS+G  I+ F GH   V     +E    + SA  DQ+ R WD  +  T+
Sbjct:  133 DWEAGDMERT----LKGHTKAVMDVDFDPRGGLMATCSSDLTLKLWDTANQYTNVKTLHGHDHSVSSVRFMPDGETLVSASRDKTIRVWQVSSGYCIKTFSGHAEWVREAVPSEDGRWLVSASNDQTSRIWDFSTGETK 267          

HSP 2 Score: 74.7146 bits (182), Expect = 5.070e-13
Identity = 41/116 (35.34%), Postives = 56/116 (48.28%), Query Frame = 3
Query:  252 TEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKF---NEYSSVVASAG 590
            T    L GH+ +V + RF  DG   +S  +D+TIR+W    G  IKT+  H   VR+   + D   L+S   D+    WD STG    + RGHE  V    F   N Y ++   AG
Sbjct:  181 TNVKTLHGHDHSVSSVRFMPDGETLVSASRDKTIRVWQVSSGYCIKTFSGHAEWVREAVPSEDGRWLVSASNDQTSRIWDFSTGETKMELRGHEHVVECAVFAPVNAYPAIRELAG 296          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: YZLL_CAEEL (Uncharacterized WD repeat-containing protein K04G11.4 OS=Caenorhabditis elegans GN=K04G11.4 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.334e-13
Identity = 41/143 (28.67%), Postives = 76/143 (53.15%), Query Frame = 3
Query:  258 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRSHSTEPIQIIDTFQDSVMSVC 686
            A +   H+ ++   +F+ DG Y  S   D +I++W     ++ KT   H   + +   + D+  ++SC  D+ +  +DVS+GR ++  +GH + V    FN   +++AS  +D+++R W  R+ +T  I  I   +D V SVC
Sbjct:  100 AEIPNAHKKSISGIKFSPDGRYMGSGSADCSIKIWRMDF-VYEKTLMGHRLGINEFSWSSDSKLIVSCSDDKLVKVFDVSSGRCVKTLKGHTNYVFCCCFNPSGTLIASGSFDETIRIWCARNGNT--IFSIPGHEDPVSSVC 239          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: WD51B_PONAB (WD repeat-containing protein 51B OS=Pongo abelii GN=WDR51B PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.334e-13
Identity = 36/125 (28.80%), Postives = 63/125 (50.40%), Query Frame = 3
Query:  249 RTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCR 623
            R + +  K H   V +  F+ DG +  +  +D++I++W+ +R   + +   H   VR    +PD   ++SC  D+ I  WD +  + +  F       N V FN   + +ASAG DQ+++ WD R
Sbjct:   92 RGKFSEFKAHTAPVRSVDFSADGQFLATASEDKSIKVWSMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFVDFNPSGTCIASAGSDQTVKVWDVR 216          

HSP 2 Score: 73.1738 bits (178), Expect = 1.475e-12
Identity = 41/143 (28.67%), Postives = 63/143 (44.06%), Query Frame = 3
Query:  246 PRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRSHSTEPIQIIDTFQDSV 674
            P   A    GH+  V + +F+  GN   S  +DRT+RLW P +      +K H   VR V  + D   L +   D+ I  W +   R +     H   V   KF+    ++ S   D++++ WD     T   Q ++ F DSV
Sbjct:   49 PHARAYRYVGHKDVVTSVQFSPHGNLLASASRDRTVRLWIPDKRGKFSEFKAHTAPVRSVDFSADGQFLATASEDKSIKVWSMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWD-----TTNKQCVNNFSDSV 186          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: WD51B_HUMAN (WD repeat-containing protein 51B OS=Homo sapiens GN=WDR51B PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.334e-13
Identity = 36/125 (28.80%), Postives = 63/125 (50.40%), Query Frame = 3
Query:  249 RTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCR 623
            R + +  K H   V +  F+ DG +  +  +D++I++W+ +R   + +   H   VR    +PD   ++SC  D+ I  WD +  + +  F       N V FN   + +ASAG DQ+++ WD R
Sbjct:   92 RGKFSEFKAHTAPVRSVDFSADGQFLATASEDKSIKVWSMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFVDFNPSGTCIASAGSDQTVKVWDVR 216          

HSP 2 Score: 73.1738 bits (178), Expect = 1.475e-12
Identity = 41/143 (28.67%), Postives = 63/143 (44.06%), Query Frame = 3
Query:  246 PRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRSHSTEPIQIIDTFQDSV 674
            P   A    GH+  V + +F+  GN   S  +DRT+RLW P +      +K H   VR V  + D   L +   D+ I  W +   R +     H   V   KF+    ++ S   D++++ WD     T   Q ++ F DSV
Sbjct:   49 PHARAYRYVGHKDVVTSVQFSPHGNLLASASRDRTVRLWIPDKRGKFSEFKAHTAPVRSVDFSADGQFLATASEDKSIKVWSMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWD-----TTNKQCVNNFSDSV 186          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: TG125_CAEEL (WD repeat-containing protein tag-125 OS=Caenorhabditis elegans GN=tag-125 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.334e-13
Identity = 35/120 (29.17%), Postives = 67/120 (55.83%), Query Frame = 3
Query:  267 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRS 626
            L+GH  ++ +A+F+  G Y  +   D+T+++WN    I  +T   H   V D+  + D+  ++S   D+ +  +++ T R+ +  +GH + V    FN  SS+V S  +D+S+R WD ++
Sbjct:   83 LEGHTKSISSAKFSPCGKYLGTSSADKTVKIWNMDHMICERTLTGHKLGVNDIAWSSDSRCVVSASDDKTLKIFEIVTSRMTKTLKGHNNYVFCCNFNPQSSLVVSGSFDESVRIWDVKT 202          

HSP 2 Score: 69.3218 bits (168), Expect = 2.130e-11
Identity = 37/117 (31.62%), Postives = 56/117 (47.86%), Query Frame = 3
Query:  267 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWD 617
            L GH+  V    ++ D    +S   D+T++++        KT K H   V   +  P +S ++S   D  +  WDV TG  I+    H   V+AV FN   S++AS  YD  +R WD
Sbjct:  125 LTGHKLGVNDIAWSSDSRCVVSASDDKTLKIFEIVTSRMTKTLKGHNNYVFCCNFNPQSSLVVSGSFDESVRIWDVKTGMCIKTLPAHSDPVSAVSFNRDGSLIASGSYDGLVRIWD 241          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: APAF_MOUSE (Apoptotic protease-activating factor 1 OS=Mus musculus GN=Apaf1 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.334e-13
Identity = 37/122 (30.33%), Postives = 59/122 (48.36%), Query Frame = 3
Query:  267 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFY--WDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRS 626
            +K HE  VL   F+ D +Y  +C  D+ +++W+   G  + TY  H  +V   H T  ++ L+   G    F   WD++         GH + VN  +F+    ++AS   D +LR WD RS
Sbjct:  653 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNSSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 774          

HSP 2 Score: 71.2478 bits (173), Expect = 5.606e-12
Identity = 36/120 (30.00%), Postives = 63/120 (52.50%), Query Frame = 3
Query:  264 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSS--VVASAGYDQSLRAWD 617
            V++ H  AV  A F+ DG    SCG D+T++++    G  +   K H  EV     + D+S + +C  D+++  WD +TG+++  +  H  +VN   F   S+  ++A+   D  L+ WD
Sbjct:  610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNSSNHLLLATGSNDFFLKLWD 729          
The following BLAST results are available for this feature:
BLAST of FC875609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
KTNB1_MOUSE2.688e-1429.29Katanin p80 WD40-containing subunit B1 OS=Mus musc... [more]
KTNB1_HUMAN2.688e-1429.29Katanin p80 WD40-containing subunit B1 OS=Homo sap... [more]
NUDF_USTMA5.989e-1431.65Nuclear distribution protein PAC1 OS=Ustilago mayd... [more]
KTNB1_STRPU5.989e-1427.86Katanin p80 WD40-containing subunit B1 OS=Strongyl... [more]
NUDF_CRYNE1.022e-1332.37Nuclear distribution protein PAC1 OS=Cryptococcus ... [more]
YZLL_CAEEL1.334e-1328.67Uncharacterized WD repeat-containing protein K04G1... [more]
WD51B_PONAB1.334e-1328.80WD repeat-containing protein 51B OS=Pongo abelii G... [more]
WD51B_HUMAN1.334e-1328.80WD repeat-containing protein 51B OS=Homo sapiens G... [more]
TG125_CAEEL1.334e-1329.17WD repeat-containing protein tag-125 OS=Caenorhabd... [more]
APAF_MOUSE1.334e-1330.33Apoptotic protease-activating factor 1 OS=Mus musc... [more]

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Properties
Property NameValue
Genbank descriptionC31405G12EF CTVClemen1 Citrus clementina cDNA clone C31405G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875609 ID=FC875609; Name=FC875609; organism=Citrus clementina; type=EST; length=688bp
GGAGACATGACAAATCGCTATATCACTATATCAAATCAGGAACCTAAGTT
AACAATCAATGTAATCTTTGGTTTTTGCTAATAATTACATAAAGATTCAG
GGGCTCCAACTTTATTTACTGTACTTTAAAAGCAAAATAACAATAAAAGC
CCTCAATTTCGAATTGTTTATGCTTTTTCCATCGCAACGGCGCACGGTAA
CTCGTTCCCGCTCAAAGAAGCAAAGAGATGAGCGTATCCGATCTGCCGAG
GACAGAGGCTAACGTGCTCAAGGGCCACGAAGGCGCAGTTTTAGCCGCTC
GGTTCAACGGCGACGGTAATTATTGTCTGAGTTGCGGCAAGGACCGCACC
ATCCGCTTGTGGAATCCTCACCGCGGGATTCACATCAAGACCTACAAACC
CCACGGCCGCGAAGTCCGCGACGTCCACGTTACCCCAGACAACTCGAAGT
TGATATCTTGTGGCGGTGATCGGCAAATCTTTTATTGGGATGTTTCGACT
GGTCGTGTTATTCGGAAGTTTCGTGGCCACGAAAGCGAGGTGAATGCAGT
AAAGTTTAATGAGTATTCATCAGTGGTAGCATCAGCCGGCTATGATCAAT
CCTTGCGAGCTTGGGACTGTCGATCACATAGCACTGAGCCTATTCAGATT
ATTGATACTTTTCAAGACAGTGTGATGTCTGTTTGCTT
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