FC875609
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: WSB2_MOUSE (WD repeat and SOCS box-containing protein 2 OS=Mus musculus GN=Wsb2 PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.743e-13 Identity = 45/141 (31.91%), Postives = 73/141 (51.77%), Query Frame = 3 Query: 267 LKGHEGAVLAARFNGDGNYCL-SCGKDRTIRLWNPHR-GIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWD----CRSHSTEPIQIIDTFQDS 671 L GH+ V F G+ L S +D+T+R+W+ ++ G I+ H + V ++PD S L S G++ +F W + + +IRK GH+S V + F+ S+++ +A YD S+ WD R S Q+ T DS Sbjct: 149 LSGHQDVVRDLSFTPSGSLILVSASRDKTLRIWDLNKHGKQIQVLSGHLQWVYCCSISPDCSMLCSAAGEKSVFLWSMRSYTLIRKLEGHQSSVVSCDFSPDSALLVTASYDTSVIMWDPYTGARLRSLHHTQLEPTMDDS 289
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: TBL1X_MOUSE (F-box-like/WD repeat-containing protein TBL1X OS=Mus musculus GN=Tbl1x PE=2 SV=2) HSP 1 Score: 76.2554 bits (186), Expect = 1.743e-13 Identity = 43/136 (31.62%), Postives = 69/136 (50.74%), Query Frame = 3 Query: 258 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAW---------DCRSHSTE 638 A+ L H+G + A ++N GNY LS G D+T +W+ H G + + H DV +N+ SC D I + R ++ F+GH +EVNA+K++ ++AS D +L+ W D ++HS E Sbjct: 272 ASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVD-WQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDACVHDLQAHSKE 406
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: SNR40_HUMAN (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens GN=SNRNP40 PE=1 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.743e-13 Identity = 44/138 (31.88%), Postives = 68/138 (49.28%), Query Frame = 3 Query: 264 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGI-HIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNA-VKFNEYSSVVASAGYDQSLRAWDCRSHSTEPIQIIDTFQDS 671 +L GHEG V +F+ +G+ S G DR I LWN + + T K H V ++H D S L S D+ + WD TG +++ +GH S VN+ +V + D +++ WD R + I TFQ++ Sbjct: 61 LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAA-----IQTFQNT 193 HSP 2 Score: 72.7886 bits (177), Expect = 1.927e-12 Identity = 38/122 (31.15%), Postives = 60/122 (49.18%), Query Frame = 3 Query: 267 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGG-DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRSH 629 LKGH GAV+ +N DG+ S D+T+ +W+ G +K K H V + +L+ G D + WD+ I+ F+ + +V AV FN+ S + S G D ++ WD R + Sbjct: 105 LKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQN 225
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: SNR40_BOVIN (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Bos taurus GN=SNRNP40 PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.743e-13 Identity = 44/138 (31.88%), Postives = 68/138 (49.28%), Query Frame = 3 Query: 264 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGI-HIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNA-VKFNEYSSVVASAGYDQSLRAWDCRSHSTEPIQIIDTFQDS 671 +L GHEG V +F+ +G+ S G DR I LWN + + T K H V ++H D S L S D+ + WD TG +++ +GH S VN+ +V + D +++ WD R + I TFQ++ Sbjct: 62 LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAA-----IQTFQNT 194 HSP 2 Score: 72.7886 bits (177), Expect = 1.927e-12 Identity = 38/122 (31.15%), Postives = 60/122 (49.18%), Query Frame = 3 Query: 267 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGG-DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRSH 629 LKGH GAV+ +N DG+ S D+T+ +W+ G +K K H V + +L+ G D + WD+ I+ F+ + +V AV FN+ S + S G D ++ WD R + Sbjct: 106 LKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQN 226
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: KTNB1_XENTR (Katanin p80 WD40-containing subunit B1 OS=Xenopus tropicalis GN=katnb1 PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.743e-13 Identity = 45/165 (27.27%), Postives = 78/165 (47.27%), Query Frame = 3 Query: 186 NGAR*LVPAQRSKEMSVSDLPRTEA-NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWD--------CRSHSTEPIQII 653 N +V +S + V DL + L GH+ V + F+ G++ S D I+LW+ R + YK H + VR + +PD L S D + WD++ G+++ + H+ VN ++F+ ++AS D+++R WD C T P++ I Sbjct: 73 NAEELIVAGSQSGSLRVWDLEAAKILRTLMGHKANVCSLDFHPYGDFVASGSLDTNIKLWDVRRKGCVFRYKGHTQAVRCLRFSPDGKWLASASDDHSVKLWDLTAGKMMAELSEHKGPVNIIEFHPNEYLLASGSADRTVRFWDLEKFQLIGCTEGETIPVRAI 237
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: KTNB1_DANRE (Katanin p80 WD40-containing subunit B1 OS=Danio rerio GN=katnb1 PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.743e-13 Identity = 38/117 (32.48%), Postives = 62/117 (52.99%), Query Frame = 3 Query: 267 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWD 617 L GH+ ++ + F+ G Y S D I+LW+ R + YK H + VR + +PD L S D + WD+ G++I +F H S VN V+F+ ++AS D++++ WD Sbjct: 101 LMGHKASISSLDFHPMGEYLASGSVDSNIKLWDVRRKGCVFRYKGHTQAVRCLAFSPDGKWLASASDDSTVKLWDLIAGKMITEFTSHTSAVNVVQFHPNEYLLASGSADRTVKLWD 217
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: WD51A_MOUSE (WD repeat-containing protein 51A OS=Mus musculus GN=Wdr51a PE=2 SV=2) HSP 1 Score: 75.8702 bits (185), Expect = 2.276e-13 Identity = 34/125 (27.20%), Postives = 62/125 (49.60%), Query Frame = 3 Query: 255 EANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRSH 629 E+ V + H V + F DG ++ D+T+++W+ HR + + H VR +PD ++S D+ + WD ++ I + H V V F+ + +A+AG D +++ WD R+H Sbjct: 95 ESTVFRAHTATVRSVHFCSDGQSLVTASDDKTVKVWSTHRQRFLFSLTQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECIHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDARTH 219 HSP 2 Score: 69.707 bits (169), Expect = 1.631e-11 Identity = 33/124 (26.61%), Postives = 58/124 (46.77%), Query Frame = 3 Query: 246 PRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWD 617 P++ A GH+ AV F+ G+ S +D+T+R+W P+ ++ H VR VH D L++ D+ + W R + H + V KF+ ++ SA D++++ WD Sbjct: 50 PQSRAYRFTGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSLVTASDDKTVKVWSTHRQRFLFSLTQHINWVRCAKFSPDGRLIVSASDDKTVKLWD 173
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: SNR40_MOUSE (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Mus musculus GN=Snrnp40 PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.276e-13 Identity = 43/138 (31.16%), Postives = 68/138 (49.28%), Query Frame = 3 Query: 264 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGI-HIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNA-VKFNEYSSVVASAGYDQSLRAWDCRSHSTEPIQIIDTFQDS 671 +L GHEG V +F+ +G+ S G DR I LWN + + T K H V ++H D S L S D+ + WD TG +++ +GH S VN+ +V + D +++ WD R + + TFQ++ Sbjct: 62 LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAA-----VQTFQNT 194 HSP 2 Score: 72.4034 bits (176), Expect = 2.516e-12 Identity = 37/122 (30.33%), Postives = 60/122 (49.18%), Query Frame = 3 Query: 267 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGG-DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRSH 629 LKGH GAV+ +N DG+ S D+T+ +W+ G +K K H V + +L+ G D + WD+ ++ F+ + +V AV FN+ S + S G D ++ WD R + Sbjct: 106 LKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAVQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQN 226
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: TBL1X_HUMAN (F-box-like/WD repeat-containing protein TBL1X OS=Homo sapiens GN=TBL1X PE=1 SV=3) HSP 1 Score: 75.485 bits (184), Expect = 2.972e-13 Identity = 39/122 (31.97%), Postives = 64/122 (52.46%), Query Frame = 3 Query: 258 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCR 623 A+ L H+G + A ++N GNY LS G D+T +W+ H G + + H DV +N+ SC D I + R ++ F+GH +EVNA+K++ ++AS D +L+ W + Sbjct: 322 ASTLGQHKGPIFALKWNRKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVD-WQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMK 442
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: TB1RB_XENLA (F-box-like/WD repeat-containing protein TBL1XR1-B OS=Xenopus laevis GN=tbl1xr1-B PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.972e-13 Identity = 41/126 (32.54%), Postives = 67/126 (53.17%), Query Frame = 3 Query: 258 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRSHST 635 A+ L H+G + A ++N GN+ LS G D+T +W+ H G + + H DV +N+ SC D I + R I+ F+GH +EVNA+K++ +++AS D +L+ W + H T Sbjct: 267 ASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNT-FASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMK-HDT 390 The following BLAST results are available for this feature:
BLAST of FC875609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 135
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875609 ID=FC875609; Name=FC875609; organism=Citrus clementina; type=EST; length=688bpback to top |