FC875609

Overview
NameFC875609
Unique NameFC875609
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10276 contig Ccv1_Contig10276:1..688. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: WSB2_MOUSE (WD repeat and SOCS box-containing protein 2 OS=Mus musculus GN=Wsb2 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.743e-13
Identity = 45/141 (31.91%), Postives = 73/141 (51.77%), Query Frame = 3
Query:  267 LKGHEGAVLAARFNGDGNYCL-SCGKDRTIRLWNPHR-GIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWD----CRSHSTEPIQIIDTFQDS 671
            L GH+  V    F   G+  L S  +D+T+R+W+ ++ G  I+    H + V    ++PD S L S  G++ +F W + +  +IRK  GH+S V +  F+  S+++ +A YD S+  WD     R  S    Q+  T  DS
Sbjct:  149 LSGHQDVVRDLSFTPSGSLILVSASRDKTLRIWDLNKHGKQIQVLSGHLQWVYCCSISPDCSMLCSAAGEKSVFLWSMRSYTLIRKLEGHQSSVVSCDFSPDSALLVTASYDTSVIMWDPYTGARLRSLHHTQLEPTMDDS 289          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: TBL1X_MOUSE (F-box-like/WD repeat-containing protein TBL1X OS=Mus musculus GN=Tbl1x PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.743e-13
Identity = 43/136 (31.62%), Postives = 69/136 (50.74%), Query Frame = 3
Query:  258 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAW---------DCRSHSTE 638
            A+ L  H+G + A ++N  GNY LS G D+T  +W+ H G   + +  H     DV    +N+   SC  D  I    +   R ++ F+GH +EVNA+K++    ++AS   D +L+ W         D ++HS E
Sbjct:  272 ASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVD-WQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDACVHDLQAHSKE 406          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: SNR40_HUMAN (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens GN=SNRNP40 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.743e-13
Identity = 44/138 (31.88%), Postives = 68/138 (49.28%), Query Frame = 3
Query:  264 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGI-HIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNA-VKFNEYSSVVASAGYDQSLRAWDCRSHSTEPIQIIDTFQDS 671
            +L GHEG V   +F+ +G+   S G DR I LWN +    +  T K H   V ++H   D S L S   D+ +  WD  TG  +++ +GH S VN+         +V +   D +++ WD R  +      I TFQ++
Sbjct:   61 LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAA-----IQTFQNT 193          

HSP 2 Score: 72.7886 bits (177), Expect = 1.927e-12
Identity = 38/122 (31.15%), Postives = 60/122 (49.18%), Query Frame = 3
Query:  267 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGG-DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRSH 629
            LKGH GAV+   +N DG+   S   D+T+ +W+   G  +K  K H   V   +      +L+  G  D  +  WD+     I+ F+ +  +V AV FN+ S  + S G D  ++ WD R +
Sbjct:  105 LKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQN 225          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: SNR40_BOVIN (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Bos taurus GN=SNRNP40 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.743e-13
Identity = 44/138 (31.88%), Postives = 68/138 (49.28%), Query Frame = 3
Query:  264 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGI-HIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNA-VKFNEYSSVVASAGYDQSLRAWDCRSHSTEPIQIIDTFQDS 671
            +L GHEG V   +F+ +G+   S G DR I LWN +    +  T K H   V ++H   D S L S   D+ +  WD  TG  +++ +GH S VN+         +V +   D +++ WD R  +      I TFQ++
Sbjct:   62 LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAA-----IQTFQNT 194          

HSP 2 Score: 72.7886 bits (177), Expect = 1.927e-12
Identity = 38/122 (31.15%), Postives = 60/122 (49.18%), Query Frame = 3
Query:  267 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGG-DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRSH 629
            LKGH GAV+   +N DG+   S   D+T+ +W+   G  +K  K H   V   +      +L+  G  D  +  WD+     I+ F+ +  +V AV FN+ S  + S G D  ++ WD R +
Sbjct:  106 LKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQN 226          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: KTNB1_XENTR (Katanin p80 WD40-containing subunit B1 OS=Xenopus tropicalis GN=katnb1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.743e-13
Identity = 45/165 (27.27%), Postives = 78/165 (47.27%), Query Frame = 3
Query:  186 NGAR*LVPAQRSKEMSVSDLPRTEA-NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWD--------CRSHSTEPIQII 653
            N    +V   +S  + V DL   +    L GH+  V +  F+  G++  S   D  I+LW+  R   +  YK H + VR +  +PD   L S   D  +  WD++ G+++ +   H+  VN ++F+    ++AS   D+++R WD        C    T P++ I
Sbjct:   73 NAEELIVAGSQSGSLRVWDLEAAKILRTLMGHKANVCSLDFHPYGDFVASGSLDTNIKLWDVRRKGCVFRYKGHTQAVRCLRFSPDGKWLASASDDHSVKLWDLTAGKMMAELSEHKGPVNIIEFHPNEYLLASGSADRTVRFWDLEKFQLIGCTEGETIPVRAI 237          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: KTNB1_DANRE (Katanin p80 WD40-containing subunit B1 OS=Danio rerio GN=katnb1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.743e-13
Identity = 38/117 (32.48%), Postives = 62/117 (52.99%), Query Frame = 3
Query:  267 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWD 617
            L GH+ ++ +  F+  G Y  S   D  I+LW+  R   +  YK H + VR +  +PD   L S   D  +  WD+  G++I +F  H S VN V+F+    ++AS   D++++ WD
Sbjct:  101 LMGHKASISSLDFHPMGEYLASGSVDSNIKLWDVRRKGCVFRYKGHTQAVRCLAFSPDGKWLASASDDSTVKLWDLIAGKMITEFTSHTSAVNVVQFHPNEYLLASGSADRTVKLWD 217          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: WD51A_MOUSE (WD repeat-containing protein 51A OS=Mus musculus GN=Wdr51a PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.276e-13
Identity = 34/125 (27.20%), Postives = 62/125 (49.60%), Query Frame = 3
Query:  255 EANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRSH 629
            E+ V + H   V +  F  DG   ++   D+T+++W+ HR   + +   H   VR    +PD   ++S   D+ +  WD ++   I  +  H   V  V F+   + +A+AG D +++ WD R+H
Sbjct:   95 ESTVFRAHTATVRSVHFCSDGQSLVTASDDKTVKVWSTHRQRFLFSLTQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECIHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDARTH 219          

HSP 2 Score: 69.707 bits (169), Expect = 1.631e-11
Identity = 33/124 (26.61%), Postives = 58/124 (46.77%), Query Frame = 3
Query:  246 PRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWD 617
            P++ A    GH+ AV    F+  G+   S  +D+T+R+W P+       ++ H   VR VH   D   L++   D+ +  W     R +     H + V   KF+    ++ SA  D++++ WD
Sbjct:   50 PQSRAYRFTGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSLVTASDDKTVKVWSTHRQRFLFSLTQHINWVRCAKFSPDGRLIVSASDDKTVKLWD 173          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: SNR40_MOUSE (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Mus musculus GN=Snrnp40 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.276e-13
Identity = 43/138 (31.16%), Postives = 68/138 (49.28%), Query Frame = 3
Query:  264 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGI-HIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNA-VKFNEYSSVVASAGYDQSLRAWDCRSHSTEPIQIIDTFQDS 671
            +L GHEG V   +F+ +G+   S G DR I LWN +    +  T K H   V ++H   D S L S   D+ +  WD  TG  +++ +GH S VN+         +V +   D +++ WD R  +      + TFQ++
Sbjct:   62 LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAA-----VQTFQNT 194          

HSP 2 Score: 72.4034 bits (176), Expect = 2.516e-12
Identity = 37/122 (30.33%), Postives = 60/122 (49.18%), Query Frame = 3
Query:  267 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGG-DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRSH 629
            LKGH GAV+   +N DG+   S   D+T+ +W+   G  +K  K H   V   +      +L+  G  D  +  WD+     ++ F+ +  +V AV FN+ S  + S G D  ++ WD R +
Sbjct:  106 LKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAVQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQN 226          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: TBL1X_HUMAN (F-box-like/WD repeat-containing protein TBL1X OS=Homo sapiens GN=TBL1X PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 2.972e-13
Identity = 39/122 (31.97%), Postives = 64/122 (52.46%), Query Frame = 3
Query:  258 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCR 623
            A+ L  H+G + A ++N  GNY LS G D+T  +W+ H G   + +  H     DV    +N+   SC  D  I    +   R ++ F+GH +EVNA+K++    ++AS   D +L+ W  +
Sbjct:  322 ASTLGQHKGPIFALKWNRKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVD-WQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMK 442          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: TB1RB_XENLA (F-box-like/WD repeat-containing protein TBL1XR1-B OS=Xenopus laevis GN=tbl1xr1-B PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.972e-13
Identity = 41/126 (32.54%), Postives = 67/126 (53.17%), Query Frame = 3
Query:  258 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRSHST 635
            A+ L  H+G + A ++N  GN+ LS G D+T  +W+ H G   + +  H     DV    +N+   SC  D  I    +   R I+ F+GH +EVNA+K++   +++AS   D +L+ W  + H T
Sbjct:  267 ASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNT-FASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMK-HDT 390          
The following BLAST results are available for this feature:
BLAST of FC875609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
WSB2_MOUSE1.743e-1331.91WD repeat and SOCS box-containing protein 2 OS=Mus... [more]
TBL1X_MOUSE1.743e-1331.62F-box-like/WD repeat-containing protein TBL1X OS=M... [more]
SNR40_HUMAN1.743e-1331.88U5 small nuclear ribonucleoprotein 40 kDa protein ... [more]
SNR40_BOVIN1.743e-1331.88U5 small nuclear ribonucleoprotein 40 kDa protein ... [more]
KTNB1_XENTR1.743e-1327.27Katanin p80 WD40-containing subunit B1 OS=Xenopus ... [more]
KTNB1_DANRE1.743e-1332.48Katanin p80 WD40-containing subunit B1 OS=Danio re... [more]
WD51A_MOUSE2.276e-1327.20WD repeat-containing protein 51A OS=Mus musculus G... [more]
SNR40_MOUSE2.276e-1331.16U5 small nuclear ribonucleoprotein 40 kDa protein ... [more]
TBL1X_HUMAN2.972e-1331.97F-box-like/WD repeat-containing protein TBL1X OS=H... [more]
TB1RB_XENLA2.972e-1332.54F-box-like/WD repeat-containing protein TBL1XR1-B ... [more]

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Properties
Property NameValue
Genbank descriptionC31405G12EF CTVClemen1 Citrus clementina cDNA clone C31405G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875609 ID=FC875609; Name=FC875609; organism=Citrus clementina; type=EST; length=688bp
GGAGACATGACAAATCGCTATATCACTATATCAAATCAGGAACCTAAGTT
AACAATCAATGTAATCTTTGGTTTTTGCTAATAATTACATAAAGATTCAG
GGGCTCCAACTTTATTTACTGTACTTTAAAAGCAAAATAACAATAAAAGC
CCTCAATTTCGAATTGTTTATGCTTTTTCCATCGCAACGGCGCACGGTAA
CTCGTTCCCGCTCAAAGAAGCAAAGAGATGAGCGTATCCGATCTGCCGAG
GACAGAGGCTAACGTGCTCAAGGGCCACGAAGGCGCAGTTTTAGCCGCTC
GGTTCAACGGCGACGGTAATTATTGTCTGAGTTGCGGCAAGGACCGCACC
ATCCGCTTGTGGAATCCTCACCGCGGGATTCACATCAAGACCTACAAACC
CCACGGCCGCGAAGTCCGCGACGTCCACGTTACCCCAGACAACTCGAAGT
TGATATCTTGTGGCGGTGATCGGCAAATCTTTTATTGGGATGTTTCGACT
GGTCGTGTTATTCGGAAGTTTCGTGGCCACGAAAGCGAGGTGAATGCAGT
AAAGTTTAATGAGTATTCATCAGTGGTAGCATCAGCCGGCTATGATCAAT
CCTTGCGAGCTTGGGACTGTCGATCACATAGCACTGAGCCTATTCAGATT
ATTGATACTTTTCAAGACAGTGTGATGTCTGTTTGCTT
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