FC875609

Overview
NameFC875609
Unique NameFC875609
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10276 contig Ccv1_Contig10276:1..688. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: TB1RA_XENLA (F-box-like/WD repeat-containing protein TBL1XR1-A OS=Xenopus laevis GN=tbl1xr1-A PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.972e-13
Identity = 41/126 (32.54%), Postives = 67/126 (53.17%), Query Frame = 3
Query:  258 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRSHST 635
            A+ L  H+G + A ++N  GN+ LS G D+T  +W+ H G   + +  H     DV    +N+   SC  D  I    +   R I+ F+GH +EVNA+K++   +++AS   D +L+ W  + H T
Sbjct:  264 ASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNT-FASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMK-HDT 387          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: PRP46_EMENI (Pre-mRNA-splicing factor prp46 OS=Emericella nidulans GN=prp46 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.972e-13
Identity = 41/123 (33.33%), Postives = 61/123 (49.59%), Query Frame = 3
Query:  264 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRSHS 632
            V+ GH G V +     +  +  S   DRTI++WN   G    T   H   VR + V+P +  L SCG D+ +  WD+ T +VIR + GH S V  +  +    ++ + G D   R WD R+ S
Sbjct:  138 VISGHLGWVRSLAVEPNNEWFASGAGDRTIKIWNLATGALRLTLTGHISTVRGLAVSPRHPYLFSCGEDKMVKCWDLETNKVIRHYHGHLSGVYTLALHPRLDLLVTGGRDGVARVWDMRTRS 260          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: PRP46_ASPFU (Pre-mRNA-splicing factor prp46 OS=Aspergillus fumigatus GN=prp46 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.972e-13
Identity = 41/123 (33.33%), Postives = 61/123 (49.59%), Query Frame = 3
Query:  264 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRSHS 632
            V+ GH G V +     +  +  S   DRTI++WN   G    T   H   VR + V+P +  L SCG D+ +  WD+ T +VIR + GH S V  +  +    ++ + G D   R WD R+ S
Sbjct:  139 VISGHLGWVRSLAVEPNNEWFASGAGDRTIKIWNLATGALRLTLTGHISTVRGLAVSPRHPYLFSCGEDKMVKCWDLETNKVIRHYHGHLSGVYTLALHPRLDLLVTGGRDGVARVWDMRTRS 261          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: Y163_SYNY3 (Uncharacterized WD repeat-containing protein sll0163 OS=Synechocystis sp. (strain PCC 6803) GN=sll0163 PE=4 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13
Identity = 40/133 (30.08%), Postives = 67/133 (50.38%), Query Frame = 3
Query:  261 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWD--------CRSHST 635
            NVL+GH+ A+ A  ++ DG Y  +   D T++LW  H G  + T + H   VR VH +P +  L++ G D     W+ + G  +   +GH   V   +FN +  ++ +A  D + R WD        C+ H++
Sbjct: 1049 NVLRGHQEAITALDWSADGQYFATASADHTVKLWQRH-GEEVATLRGHEDWVRSVHFSPHHQFLVTSGQDNTARIWNFA-GEQLTLCQGHADWVRNAEFNCHGQILLTASRDGTARLWDLEGREIGLCQGHTS 1179          

HSP 2 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 37/139 (26.62%), Postives = 66/139 (47.48%), Query Frame = 3
Query:  201 LVPAQRSKEMSVSDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWD 617
            +V     K   + ++   +  VL+GH+ AVL  RF+ D  Y ++  KD T R+WN + G  +   + + + +     + D   +++   D     W++  GR +   RGHE  V   +F+  S  + +A  D + R WD
Sbjct: 1398 IVTGSADKTAQLWNVLGKKLTVLRGHQDAVLNVRFSPDSQYIVTASKDGTARVWN-NTGRELAVLRHYEKNIFAAEFSADGQFIVTASDDNTAGIWEI-VGREVGICRGHEGPVYFAQFSADSRYILTASVDNTARIWD 1534          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: WD51A_HUMAN (WD repeat-containing protein 51A OS=Homo sapiens GN=WDR51A PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13
Identity = 34/125 (27.20%), Postives = 61/125 (48.80%), Query Frame = 3
Query:  255 EANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRSH 629
            E+ V + H   V +  F  DG   ++   D+T+++W  HR   + +   H   VR    +PD   ++S   D+ +  WD S+   +  +  H   V  V F+   + +A+AG D +++ WD R+H
Sbjct:   95 ESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWATHRQKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKSSRECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTH 219          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: WD51A_BOVIN (WD repeat-containing protein 51A OS=Bos taurus GN=WDR51A PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13
Identity = 33/125 (26.40%), Postives = 62/125 (49.60%), Query Frame = 3
Query:  255 EANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRSH 629
            E+ V + H   V +  F  DG   ++   D+T+++W+ HR   + +   H   VR    +PD   ++S   D+ +  WD ++   +  +  H   V  V F+   + +A+AG D +++ WD R+H
Sbjct:   95 ESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWSTHRQKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTH 219          

HSP 2 Score: 68.5514 bits (166), Expect = 3.633e-11
Identity = 32/124 (25.81%), Postives = 57/124 (45.97%), Query Frame = 3
Query:  246 PRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWD 617
            P+T A    GH+ AV    F+  G+   S  +D+T+R+W P+       ++ H   VR VH   D    ++   D+ +  W     + +     H + V   KF+    ++ SA  D++++ WD
Sbjct:   50 PQTRAYRFAGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWSTHRQKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWD 173          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: TBL1R_MOUSE (F-box-like/WD repeat-containing protein TBL1XR1 OS=Mus musculus GN=Tbl1xr1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13
Identity = 39/122 (31.97%), Postives = 65/122 (53.28%), Query Frame = 3
Query:  258 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCR 623
            A+ L  H+G + A ++N  GN+ LS G D+T  +W+ H G   + +  H     DV    +N+   SC  D  I    +   R I+ F+GH +EVNA+K++   +++AS   D +L+ W  +
Sbjct:  259 ASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNT-FASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMK 379          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: TBL1R_HUMAN (F-box-like/WD repeat-containing protein TBL1XR1 OS=Homo sapiens GN=TBL1XR1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13
Identity = 39/122 (31.97%), Postives = 65/122 (53.28%), Query Frame = 3
Query:  258 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCR 623
            A+ L  H+G + A ++N  GN+ LS G D+T  +W+ H G   + +  H     DV    +N+   SC  D  I    +   R I+ F+GH +EVNA+K++   +++AS   D +L+ W  +
Sbjct:  259 ASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNT-FASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMK 379          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: SEL10_CAEBR (F-box/WD repeat-containing protein sel-10 OS=Caenorhabditis briggsae GN=sel-10 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13
Identity = 38/122 (31.15%), Postives = 66/122 (54.10%), Query Frame = 3
Query:  261 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRS 626
            + L GH G V  ++ +  G Y +S   DRT+++W    G  + T + H   VR + +   N+ L++   D  +  WD+ TG  +R  +GH++ V  V+F+   ++V S GYD +++ WD  S
Sbjct:  292 HTLNGHSGGVWTSQISQCGRYIVSGSTDRTVKVWRAEDGFLLHTLQGHTSTVRCMAMA--NTTLVTGSRDCTLRVWDIETGLHVRTLQGHQAAVRCVQFD--GNIVVSGGYDFTVKIWDAFS 409          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: KTNB1_XENLA (Katanin p80 WD40-containing subunit B1 OS=Xenopus laevis GN=katnb1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13
Identity = 44/165 (26.67%), Postives = 77/165 (46.67%), Query Frame = 3
Query:  186 NGAR*LVPAQRSKEMSVSDLPRTEA-NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWD--------CRSHSTEPIQII 653
            N    +V   +S  + + DL   +    L GH+  V +  F+  G +  S   D  I+LW+  R   +  YK H + VR +  +PD   L S   D  +  WD++ G+++ +   H+  VN ++F+    ++AS   D+++R WD        C    T P++ I
Sbjct:   73 NSEELIVAGSQSGSLRIWDLEAAKILRTLMGHKANVSSLDFHPYGEFVASGSLDTNIKLWDVRRKGCVFRYKGHTQAVRCLRFSPDGKWLASASDDHSVKLWDLTAGKMMAELSEHKGPVNIIEFHPNEYLLASGSADRTVRFWDLEKFQLVGCTEGETIPVRAI 237          
The following BLAST results are available for this feature:
BLAST of FC875609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
TB1RA_XENLA2.972e-1332.54F-box-like/WD repeat-containing protein TBL1XR1-A ... [more]
PRP46_EMENI2.972e-1333.33Pre-mRNA-splicing factor prp46 OS=Emericella nidul... [more]
PRP46_ASPFU2.972e-1333.33Pre-mRNA-splicing factor prp46 OS=Aspergillus fumi... [more]
Y163_SYNY33.882e-1330.08Uncharacterized WD repeat-containing protein sll01... [more]
WD51A_HUMAN3.882e-1327.20WD repeat-containing protein 51A OS=Homo sapiens G... [more]
WD51A_BOVIN3.882e-1326.40WD repeat-containing protein 51A OS=Bos taurus GN=... [more]
TBL1R_MOUSE3.882e-1331.97F-box-like/WD repeat-containing protein TBL1XR1 OS... [more]
TBL1R_HUMAN3.882e-1331.97F-box-like/WD repeat-containing protein TBL1XR1 OS... [more]
SEL10_CAEBR3.882e-1331.15F-box/WD repeat-containing protein sel-10 OS=Caeno... [more]
KTNB1_XENLA3.882e-1326.67Katanin p80 WD40-containing subunit B1 OS=Xenopus ... [more]

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Properties
Property NameValue
Genbank descriptionC31405G12EF CTVClemen1 Citrus clementina cDNA clone C31405G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875609 ID=FC875609; Name=FC875609; organism=Citrus clementina; type=EST; length=688bp
GGAGACATGACAAATCGCTATATCACTATATCAAATCAGGAACCTAAGTT
AACAATCAATGTAATCTTTGGTTTTTGCTAATAATTACATAAAGATTCAG
GGGCTCCAACTTTATTTACTGTACTTTAAAAGCAAAATAACAATAAAAGC
CCTCAATTTCGAATTGTTTATGCTTTTTCCATCGCAACGGCGCACGGTAA
CTCGTTCCCGCTCAAAGAAGCAAAGAGATGAGCGTATCCGATCTGCCGAG
GACAGAGGCTAACGTGCTCAAGGGCCACGAAGGCGCAGTTTTAGCCGCTC
GGTTCAACGGCGACGGTAATTATTGTCTGAGTTGCGGCAAGGACCGCACC
ATCCGCTTGTGGAATCCTCACCGCGGGATTCACATCAAGACCTACAAACC
CCACGGCCGCGAAGTCCGCGACGTCCACGTTACCCCAGACAACTCGAAGT
TGATATCTTGTGGCGGTGATCGGCAAATCTTTTATTGGGATGTTTCGACT
GGTCGTGTTATTCGGAAGTTTCGTGGCCACGAAAGCGAGGTGAATGCAGT
AAAGTTTAATGAGTATTCATCAGTGGTAGCATCAGCCGGCTATGATCAAT
CCTTGCGAGCTTGGGACTGTCGATCACATAGCACTGAGCCTATTCAGATT
ATTGATACTTTTCAAGACAGTGTGATGTCTGTTTGCTT
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