FC875609
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: TB1RA_XENLA (F-box-like/WD repeat-containing protein TBL1XR1-A OS=Xenopus laevis GN=tbl1xr1-A PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.972e-13 Identity = 41/126 (32.54%), Postives = 67/126 (53.17%), Query Frame = 3 Query: 258 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRSHST 635 A+ L H+G + A ++N GN+ LS G D+T +W+ H G + + H DV +N+ SC D I + R I+ F+GH +EVNA+K++ +++AS D +L+ W + H T Sbjct: 264 ASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNT-FASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMK-HDT 387
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: PRP46_EMENI (Pre-mRNA-splicing factor prp46 OS=Emericella nidulans GN=prp46 PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.972e-13 Identity = 41/123 (33.33%), Postives = 61/123 (49.59%), Query Frame = 3 Query: 264 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRSHS 632 V+ GH G V + + + S DRTI++WN G T H VR + V+P + L SCG D+ + WD+ T +VIR + GH S V + + ++ + G D R WD R+ S Sbjct: 138 VISGHLGWVRSLAVEPNNEWFASGAGDRTIKIWNLATGALRLTLTGHISTVRGLAVSPRHPYLFSCGEDKMVKCWDLETNKVIRHYHGHLSGVYTLALHPRLDLLVTGGRDGVARVWDMRTRS 260
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: PRP46_ASPFU (Pre-mRNA-splicing factor prp46 OS=Aspergillus fumigatus GN=prp46 PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.972e-13 Identity = 41/123 (33.33%), Postives = 61/123 (49.59%), Query Frame = 3 Query: 264 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRSHS 632 V+ GH G V + + + S DRTI++WN G T H VR + V+P + L SCG D+ + WD+ T +VIR + GH S V + + ++ + G D R WD R+ S Sbjct: 139 VISGHLGWVRSLAVEPNNEWFASGAGDRTIKIWNLATGALRLTLTGHISTVRGLAVSPRHPYLFSCGEDKMVKCWDLETNKVIRHYHGHLSGVYTLALHPRLDLLVTGGRDGVARVWDMRTRS 261
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: Y163_SYNY3 (Uncharacterized WD repeat-containing protein sll0163 OS=Synechocystis sp. (strain PCC 6803) GN=sll0163 PE=4 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13 Identity = 40/133 (30.08%), Postives = 67/133 (50.38%), Query Frame = 3 Query: 261 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWD--------CRSHST 635 NVL+GH+ A+ A ++ DG Y + D T++LW H G + T + H VR VH +P + L++ G D W+ + G + +GH V +FN + ++ +A D + R WD C+ H++ Sbjct: 1049 NVLRGHQEAITALDWSADGQYFATASADHTVKLWQRH-GEEVATLRGHEDWVRSVHFSPHHQFLVTSGQDNTARIWNFA-GEQLTLCQGHADWVRNAEFNCHGQILLTASRDGTARLWDLEGREIGLCQGHTS 1179 HSP 2 Score: 68.1662 bits (165), Expect = 4.745e-11 Identity = 37/139 (26.62%), Postives = 66/139 (47.48%), Query Frame = 3 Query: 201 LVPAQRSKEMSVSDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWD 617 +V K + ++ + VL+GH+ AVL RF+ D Y ++ KD T R+WN + G + + + + + + D +++ D W++ GR + RGHE V +F+ S + +A D + R WD Sbjct: 1398 IVTGSADKTAQLWNVLGKKLTVLRGHQDAVLNVRFSPDSQYIVTASKDGTARVWN-NTGRELAVLRHYEKNIFAAEFSADGQFIVTASDDNTAGIWEI-VGREVGICRGHEGPVYFAQFSADSRYILTASVDNTARIWD 1534
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: WD51A_HUMAN (WD repeat-containing protein 51A OS=Homo sapiens GN=WDR51A PE=2 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13 Identity = 34/125 (27.20%), Postives = 61/125 (48.80%), Query Frame = 3 Query: 255 EANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRSH 629 E+ V + H V + F DG ++ D+T+++W HR + + H VR +PD ++S D+ + WD S+ + + H V V F+ + +A+AG D +++ WD R+H Sbjct: 95 ESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWATHRQKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKSSRECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTH 219
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: WD51A_BOVIN (WD repeat-containing protein 51A OS=Bos taurus GN=WDR51A PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13 Identity = 33/125 (26.40%), Postives = 62/125 (49.60%), Query Frame = 3 Query: 255 EANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRSH 629 E+ V + H V + F DG ++ D+T+++W+ HR + + H VR +PD ++S D+ + WD ++ + + H V V F+ + +A+AG D +++ WD R+H Sbjct: 95 ESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWSTHRQKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTH 219 HSP 2 Score: 68.5514 bits (166), Expect = 3.633e-11 Identity = 32/124 (25.81%), Postives = 57/124 (45.97%), Query Frame = 3 Query: 246 PRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWD 617 P+T A GH+ AV F+ G+ S +D+T+R+W P+ ++ H VR VH D ++ D+ + W + + H + V KF+ ++ SA D++++ WD Sbjct: 50 PQTRAYRFAGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWSTHRQKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWD 173
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: TBL1R_MOUSE (F-box-like/WD repeat-containing protein TBL1XR1 OS=Mus musculus GN=Tbl1xr1 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13 Identity = 39/122 (31.97%), Postives = 65/122 (53.28%), Query Frame = 3 Query: 258 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCR 623 A+ L H+G + A ++N GN+ LS G D+T +W+ H G + + H DV +N+ SC D I + R I+ F+GH +EVNA+K++ +++AS D +L+ W + Sbjct: 259 ASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNT-FASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMK 379
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: TBL1R_HUMAN (F-box-like/WD repeat-containing protein TBL1XR1 OS=Homo sapiens GN=TBL1XR1 PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13 Identity = 39/122 (31.97%), Postives = 65/122 (53.28%), Query Frame = 3 Query: 258 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCR 623 A+ L H+G + A ++N GN+ LS G D+T +W+ H G + + H DV +N+ SC D I + R I+ F+GH +EVNA+K++ +++AS D +L+ W + Sbjct: 259 ASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNT-FASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMK 379
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: SEL10_CAEBR (F-box/WD repeat-containing protein sel-10 OS=Caenorhabditis briggsae GN=sel-10 PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13 Identity = 38/122 (31.15%), Postives = 66/122 (54.10%), Query Frame = 3 Query: 261 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRS 626 + L GH G V ++ + G Y +S DRT+++W G + T + H VR + + N+ L++ D + WD+ TG +R +GH++ V V+F+ ++V S GYD +++ WD S Sbjct: 292 HTLNGHSGGVWTSQISQCGRYIVSGSTDRTVKVWRAEDGFLLHTLQGHTSTVRCMAMA--NTTLVTGSRDCTLRVWDIETGLHVRTLQGHQAAVRCVQFD--GNIVVSGGYDFTVKIWDAFS 409
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: KTNB1_XENLA (Katanin p80 WD40-containing subunit B1 OS=Xenopus laevis GN=katnb1 PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13 Identity = 44/165 (26.67%), Postives = 77/165 (46.67%), Query Frame = 3 Query: 186 NGAR*LVPAQRSKEMSVSDLPRTEA-NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWD--------CRSHSTEPIQII 653 N +V +S + + DL + L GH+ V + F+ G + S D I+LW+ R + YK H + VR + +PD L S D + WD++ G+++ + H+ VN ++F+ ++AS D+++R WD C T P++ I Sbjct: 73 NSEELIVAGSQSGSLRIWDLEAAKILRTLMGHKANVSSLDFHPYGEFVASGSLDTNIKLWDVRRKGCVFRYKGHTQAVRCLRFSPDGKWLASASDDHSVKLWDLTAGKMMAELSEHKGPVNIIEFHPNEYLLASGSADRTVRFWDLEKFQLVGCTEGETIPVRAI 237 The following BLAST results are available for this feature:
BLAST of FC875609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 135
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875609 ID=FC875609; Name=FC875609; organism=Citrus clementina; type=EST; length=688bpback to top |