FC875609

Overview
NameFC875609
Unique NameFC875609
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10276 contig Ccv1_Contig10276:1..688. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: WSB2_BOVIN (WD repeat and SOCS box-containing protein 2 OS=Bos taurus GN=WSB2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.070e-13
Identity = 48/152 (31.58%), Postives = 79/152 (51.97%), Query Frame = 3
Query:  267 LKGHEGAVLAARFNGDGNYCL-SCGKDRTIRLWNPHR-GIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWD------CRS-HSTE---PIQIIDTFQDSVMSVC 686
            L GH+  V    F   G+  L S  +D+T+R+W+ ++ G  I+    H + V    ++PD S L S  G++ +F W + +  +IRK  GH+S V +  F+  S+++ +A YD ++  WD       RS H T+   P+   D    S+ SVC
Sbjct:  151 LSGHQDVVRDLSFTPSGSLILVSASRDKTLRIWDLNKHGKQIQVLSGHLQWVYCCSISPDCSMLCSAAGEKSVFLWSMRSYTLIRKLEGHQSSVVSCDFSPDSALLVTASYDTNVIMWDPYTGERLRSLHHTQLNPPMDDSDVHISSLRSVC 302          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: TBL1X_MACFA (F-box-like/WD repeat-containing protein TBL1X OS=Macaca fascicularis GN=TBL1X PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.070e-13
Identity = 39/122 (31.97%), Postives = 63/122 (51.64%), Query Frame = 3
Query:  258 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCR 623
            A+ L  H+G + A ++N  GNY LS G D+T  +W+ H G   + +  H     DV    +N    SC  D  I    +   R ++ F+GH +EVNA+K++    ++AS   D +L+ W  +
Sbjct:  314 ASTLGQHKGPIFALKWNRKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVD-WQNNMTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMK 434          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: KTNB1_ARATH (Katanin p80 WD40 repeat-containing subunit B1 homolog 1 OS=Arabidopsis thaliana GN=At5g23430 PE=2 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 5.070e-13
Identity = 32/117 (27.35%), Postives = 65/117 (55.56%), Query Frame = 3
Query:  267 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWD 617
            L GH    ++  F+  G +  S   D  +++W+  +   I TYK H R V  +  TPD   ++S G D  +  WD++ G+++ +F+ HE ++ ++ F+ +  ++A+   D++++ WD
Sbjct:   97 LTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWVVSGGEDNIVKVWDLTAGKLLTEFKSHEGQIQSLDFHPHEFLLATGSADRTVKFWD 213          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: TAF5_YEAST (Transcription initiation factor TFIID subunit 5 OS=Saccharomyces cerevisiae GN=TAF5 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.622e-13
Identity = 36/127 (28.35%), Postives = 67/127 (52.76%), Query Frame = 3
Query:  264 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGH-ESEVNAVKFNEYSSVVASAGYDQSLRAWDCRSHSTEP 641
            +  GH   V    F+ +G Y  +   D+T R+W+   G  ++ +  H   V  + V PD   L +   D  I  WD+ TG+ +++ RGH ++ + ++ +++  +V+ S G D ++R WD +  +TEP
Sbjct:  604 IFAGHLNDVDCVSFHPNGCYVFTGSSDKTCRMWDVSTGDSVRLFLGHTAPVISIAVCPDGRWLSTGSEDGIINVWDIGTGKRLKQMRGHGKNAIYSLSYSKEGNVLISGGADHTVRVWDLKKATTEP 730          

HSP 2 Score: 68.5514 bits (166), Expect = 3.633e-11
Identity = 36/117 (30.77%), Postives = 55/117 (47.01%), Query Frame = 3
Query:  267 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWD 617
            L GH G V +  F+ D  Y LS  +D+T+RLW+      + +YK H   V DV  +P      +   D+    W       +R F GH ++V+ V F+     V +   D++ R WD
Sbjct:  521 LVGHSGTVYSTSFSPDNKYLLSGSEDKTVRLWSMDTHTALVSYKGHNHPVWDVSFSPLGHYFATASHDQTARLWSCDHIYPLRIFAGHLNDVDCVSFHPNGCYVFTGSSDKTCRMWD 637          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: SNR40_PONAB (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Pongo abelii GN=SNRNP40 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.648e-13
Identity = 43/138 (31.16%), Postives = 68/138 (49.28%), Query Frame = 3
Query:  264 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGI-HIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNA-VKFNEYSSVVASAGYDQSLRAWDCRSHSTEPIQIIDTFQDS 671
            +L GHEG V   +F+ +G+   S G DR I LWN +    +  T K +   V ++H   D S L S   D+ +  WD  TG  +++ +GH S VN+         +V +   D +++ WD R  +      I TFQ++
Sbjct:   61 LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCGNYATLKGYSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAA-----IQTFQNT 193          

HSP 2 Score: 70.8626 bits (172), Expect = 7.321e-12
Identity = 45/156 (28.85%), Postives = 74/156 (47.44%), Query Frame = 3
Query:  171 CFFHRNGAR*LVPAQRSKEMSVSDLPRTEAN--VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGG-DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRSH 629
            C FH NG+  L  A   + + + ++     N   LKG+ GAV+   +N DG+   S   D+T+ +W+   G  +K  K H   V   +      +L+  G  D  +  WD+     I+ F+ +  +V AV FN+ S  + S G D  ++ WD R +
Sbjct:   72 CKFHPNGST-LASAGFDRLILLWNVYGDCGNYATLKGYSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQN 225          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: LIS1_DROME (Lissencephaly-1 homolog OS=Drosophila melanogaster GN=Lis-1 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 8.648e-13
Identity = 40/125 (32.00%), Postives = 60/125 (48.00%), Query Frame = 3
Query:  267 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIH-IKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAW-----DCR 623
            LKGH  +V    F+  G    SC  D +I+LW+  +    IKT   H   V  V   P    ++S   DR I  W+V+TG  ++ + GH   V  V+ +   S+ A+   DQ++R W     DC+
Sbjct:  146 LKGHTDSVQDVAFDAQGKLLASCSADLSIKLWDFQQSYECIKTMHGHDHNVSSVAFVPAGDYVLSASRDRTIKMWEVATGYCVKTYTGHREWVRMVRVHIEGSIFATCSNDQTIRVWLTNSKDCK 270          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: GBLP_YEAST (Guanine nucleotide-binding protein subunit beta-like protein OS=Saccharomyces cerevisiae GN=ASC1 PE=1 SV=4)

HSP 1 Score: 73.9442 bits (180), Expect = 8.648e-13
Identity = 37/122 (30.33%), Postives = 69/122 (56.56%), Query Frame = 3
Query:  267 LKGHEGAVLA-ARFNGDGNYCLSCGKDRTIRLW-----NPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAW 614
            L+GH G V + A   G  N  LS  +D+T+  W     +   G+ ++++K H   V+D  +T D +  +S   D+ +  WDV+TG   ++F GH+S+V +V  ++ +S++ S   D++++ W
Sbjct:   13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: WD51B_MOUSE (WD repeat-containing protein 51B OS=Mus musculus GN=Wdr51b PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.129e-12
Identity = 39/142 (27.46%), Postives = 69/142 (48.59%), Query Frame = 3
Query:  201 LVPAQRSKEMSVSDLPRT-EANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCR 623
            L  A R + + +  L R  +++  K H   V +  F+ DG   ++  +D++I++W+  R   + +   H   VR    +PD   ++SC  D+ I  WD +  + +  F       N V FN   + +ASAG D +++ WD R
Sbjct:   75 LASASRDRTVRLWVLDRKGKSSEFKAHTAPVRSVDFSADGQLLVTASEDKSIKVWSMFRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFVDFNPNGTCIASAGSDHAVKIWDIR 216          

HSP 2 Score: 71.633 bits (174), Expect = 4.292e-12
Identity = 41/143 (28.67%), Postives = 63/143 (44.06%), Query Frame = 3
Query:  246 PRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRSHSTEPIQIIDTFQDSV 674
            P   A    GH+  V + +F+  GN   S  +DRT+RLW   R      +K H   VR V  + D   L++   D+ I  W +   R +     H   V   KF+    ++ S   D++++ WD     T   Q ++ F DSV
Sbjct:   49 PHARAYRYVGHKDVVTSLQFSPQGNLLASASRDRTVRLWVLDRKGKSSEFKAHTAPVRSVDFSADGQLLVTASEDKSIKVWSMFRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWD-----TTNKQCVNNFSDSV 186          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: TBL1Y_HUMAN (F-box-like/WD repeat-containing protein TBL1Y OS=Homo sapiens GN=TBL1Y PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.129e-12
Identity = 42/136 (30.88%), Postives = 67/136 (49.26%), Query Frame = 3
Query:  258 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAW---------DCRSHSTE 638
            A+ L  H+G + A ++N  GNY LS G D+T  +W+ H G   + +  H     DV    +N    SC  D  I    +     ++ F+GH +EVNA+K++    ++AS   D +L+ W         D ++HS E
Sbjct:  269 ASTLGQHKGPIFALKWNKKGNYVLSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVD-WQNNMTFASCSTDMCIHVCRLGCDHPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDACVHDLQAHSKE 403          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: PRL1_ARATH (Protein pleiotropic regulatory locus 1 OS=Arabidopsis thaliana GN=PRL1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.129e-12
Identity = 38/127 (29.92%), Postives = 64/127 (50.39%), Query Frame = 3
Query:  246 PRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRS 626
            P     V++GH G V +  F+    +  +   DRTI++W+   G+   T   H  +VR + V+  ++ + S G D+Q+  WD+   +VIR + GH S V  +  +    V+ + G D   R WD R+
Sbjct:  165 PWKNYRVIQGHLGWVRSVAFDPSNEWFCTGSADRTIKIWDVATGVLKLTLTGHIEQVRGLAVSNRHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLALHPTLDVLLTGGRDSVCRVWDIRT 291          
The following BLAST results are available for this feature:
BLAST of FC875609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
WSB2_BOVIN5.070e-1331.58WD repeat and SOCS box-containing protein 2 OS=Bos... [more]
TBL1X_MACFA5.070e-1331.97F-box-like/WD repeat-containing protein TBL1X OS=M... [more]
KTNB1_ARATH5.070e-1327.35Katanin p80 WD40 repeat-containing subunit B1 homo... [more]
TAF5_YEAST6.622e-1328.35Transcription initiation factor TFIID subunit 5 OS... [more]
SNR40_PONAB8.648e-1331.16U5 small nuclear ribonucleoprotein 40 kDa protein ... [more]
LIS1_DROME8.648e-1332.00Lissencephaly-1 homolog OS=Drosophila melanogaster... [more]
GBLP_YEAST8.648e-1330.33Guanine nucleotide-binding protein subunit beta-li... [more]
WD51B_MOUSE1.129e-1227.46WD repeat-containing protein 51B OS=Mus musculus G... [more]
TBL1Y_HUMAN1.129e-1230.88F-box-like/WD repeat-containing protein TBL1Y OS=H... [more]
PRL1_ARATH1.129e-1229.92Protein pleiotropic regulatory locus 1 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionC31405G12EF CTVClemen1 Citrus clementina cDNA clone C31405G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875609 ID=FC875609; Name=FC875609; organism=Citrus clementina; type=EST; length=688bp
GGAGACATGACAAATCGCTATATCACTATATCAAATCAGGAACCTAAGTT
AACAATCAATGTAATCTTTGGTTTTTGCTAATAATTACATAAAGATTCAG
GGGCTCCAACTTTATTTACTGTACTTTAAAAGCAAAATAACAATAAAAGC
CCTCAATTTCGAATTGTTTATGCTTTTTCCATCGCAACGGCGCACGGTAA
CTCGTTCCCGCTCAAAGAAGCAAAGAGATGAGCGTATCCGATCTGCCGAG
GACAGAGGCTAACGTGCTCAAGGGCCACGAAGGCGCAGTTTTAGCCGCTC
GGTTCAACGGCGACGGTAATTATTGTCTGAGTTGCGGCAAGGACCGCACC
ATCCGCTTGTGGAATCCTCACCGCGGGATTCACATCAAGACCTACAAACC
CCACGGCCGCGAAGTCCGCGACGTCCACGTTACCCCAGACAACTCGAAGT
TGATATCTTGTGGCGGTGATCGGCAAATCTTTTATTGGGATGTTTCGACT
GGTCGTGTTATTCGGAAGTTTCGTGGCCACGAAAGCGAGGTGAATGCAGT
AAAGTTTAATGAGTATTCATCAGTGGTAGCATCAGCCGGCTATGATCAAT
CCTTGCGAGCTTGGGACTGTCGATCACATAGCACTGAGCCTATTCAGATT
ATTGATACTTTTCAAGACAGTGTGATGTCTGTTTGCTT
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