FC875609
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: WSB2_BOVIN (WD repeat and SOCS box-containing protein 2 OS=Bos taurus GN=WSB2 PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.070e-13 Identity = 48/152 (31.58%), Postives = 79/152 (51.97%), Query Frame = 3 Query: 267 LKGHEGAVLAARFNGDGNYCL-SCGKDRTIRLWNPHR-GIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWD------CRS-HSTE---PIQIIDTFQDSVMSVC 686 L GH+ V F G+ L S +D+T+R+W+ ++ G I+ H + V ++PD S L S G++ +F W + + +IRK GH+S V + F+ S+++ +A YD ++ WD RS H T+ P+ D S+ SVC Sbjct: 151 LSGHQDVVRDLSFTPSGSLILVSASRDKTLRIWDLNKHGKQIQVLSGHLQWVYCCSISPDCSMLCSAAGEKSVFLWSMRSYTLIRKLEGHQSSVVSCDFSPDSALLVTASYDTNVIMWDPYTGERLRSLHHTQLNPPMDDSDVHISSLRSVC 302
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: TBL1X_MACFA (F-box-like/WD repeat-containing protein TBL1X OS=Macaca fascicularis GN=TBL1X PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.070e-13 Identity = 39/122 (31.97%), Postives = 63/122 (51.64%), Query Frame = 3 Query: 258 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCR 623 A+ L H+G + A ++N GNY LS G D+T +W+ H G + + H DV +N SC D I + R ++ F+GH +EVNA+K++ ++AS D +L+ W + Sbjct: 314 ASTLGQHKGPIFALKWNRKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVD-WQNNMTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMK 434
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: KTNB1_ARATH (Katanin p80 WD40 repeat-containing subunit B1 homolog 1 OS=Arabidopsis thaliana GN=At5g23430 PE=2 SV=3) HSP 1 Score: 74.7146 bits (182), Expect = 5.070e-13 Identity = 32/117 (27.35%), Postives = 65/117 (55.56%), Query Frame = 3 Query: 267 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWD 617 L GH ++ F+ G + S D +++W+ + I TYK H R V + TPD ++S G D + WD++ G+++ +F+ HE ++ ++ F+ + ++A+ D++++ WD Sbjct: 97 LTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWVVSGGEDNIVKVWDLTAGKLLTEFKSHEGQIQSLDFHPHEFLLATGSADRTVKFWD 213
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: TAF5_YEAST (Transcription initiation factor TFIID subunit 5 OS=Saccharomyces cerevisiae GN=TAF5 PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 6.622e-13 Identity = 36/127 (28.35%), Postives = 67/127 (52.76%), Query Frame = 3 Query: 264 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGH-ESEVNAVKFNEYSSVVASAGYDQSLRAWDCRSHSTEP 641 + GH V F+ +G Y + D+T R+W+ G ++ + H V + V PD L + D I WD+ TG+ +++ RGH ++ + ++ +++ +V+ S G D ++R WD + +TEP Sbjct: 604 IFAGHLNDVDCVSFHPNGCYVFTGSSDKTCRMWDVSTGDSVRLFLGHTAPVISIAVCPDGRWLSTGSEDGIINVWDIGTGKRLKQMRGHGKNAIYSLSYSKEGNVLISGGADHTVRVWDLKKATTEP 730 HSP 2 Score: 68.5514 bits (166), Expect = 3.633e-11 Identity = 36/117 (30.77%), Postives = 55/117 (47.01%), Query Frame = 3 Query: 267 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWD 617 L GH G V + F+ D Y LS +D+T+RLW+ + +YK H V DV +P + D+ W +R F GH ++V+ V F+ V + D++ R WD Sbjct: 521 LVGHSGTVYSTSFSPDNKYLLSGSEDKTVRLWSMDTHTALVSYKGHNHPVWDVSFSPLGHYFATASHDQTARLWSCDHIYPLRIFAGHLNDVDCVSFHPNGCYVFTGSSDKTCRMWD 637
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: SNR40_PONAB (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Pongo abelii GN=SNRNP40 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 8.648e-13 Identity = 43/138 (31.16%), Postives = 68/138 (49.28%), Query Frame = 3 Query: 264 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGI-HIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNA-VKFNEYSSVVASAGYDQSLRAWDCRSHSTEPIQIIDTFQDS 671 +L GHEG V +F+ +G+ S G DR I LWN + + T K + V ++H D S L S D+ + WD TG +++ +GH S VN+ +V + D +++ WD R + I TFQ++ Sbjct: 61 LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCGNYATLKGYSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAA-----IQTFQNT 193 HSP 2 Score: 70.8626 bits (172), Expect = 7.321e-12 Identity = 45/156 (28.85%), Postives = 74/156 (47.44%), Query Frame = 3 Query: 171 CFFHRNGAR*LVPAQRSKEMSVSDLPRTEAN--VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGG-DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRSH 629 C FH NG+ L A + + + ++ N LKG+ GAV+ +N DG+ S D+T+ +W+ G +K K H V + +L+ G D + WD+ I+ F+ + +V AV FN+ S + S G D ++ WD R + Sbjct: 72 CKFHPNGST-LASAGFDRLILLWNVYGDCGNYATLKGYSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQN 225
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: LIS1_DROME (Lissencephaly-1 homolog OS=Drosophila melanogaster GN=Lis-1 PE=1 SV=2) HSP 1 Score: 73.9442 bits (180), Expect = 8.648e-13 Identity = 40/125 (32.00%), Postives = 60/125 (48.00%), Query Frame = 3 Query: 267 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIH-IKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAW-----DCR 623 LKGH +V F+ G SC D +I+LW+ + IKT H V V P ++S DR I W+V+TG ++ + GH V V+ + S+ A+ DQ++R W DC+ Sbjct: 146 LKGHTDSVQDVAFDAQGKLLASCSADLSIKLWDFQQSYECIKTMHGHDHNVSSVAFVPAGDYVLSASRDRTIKMWEVATGYCVKTYTGHREWVRMVRVHIEGSIFATCSNDQTIRVWLTNSKDCK 270
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: GBLP_YEAST (Guanine nucleotide-binding protein subunit beta-like protein OS=Saccharomyces cerevisiae GN=ASC1 PE=1 SV=4) HSP 1 Score: 73.9442 bits (180), Expect = 8.648e-13 Identity = 37/122 (30.33%), Postives = 69/122 (56.56%), Query Frame = 3 Query: 267 LKGHEGAVLA-ARFNGDGNYCLSCGKDRTIRLW-----NPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAW 614 L+GH G V + A G N LS +D+T+ W + G+ ++++K H V+D +T D + +S D+ + WDV+TG ++F GH+S+V +V ++ +S++ S D++++ W Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: WD51B_MOUSE (WD repeat-containing protein 51B OS=Mus musculus GN=Wdr51b PE=1 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.129e-12 Identity = 39/142 (27.46%), Postives = 69/142 (48.59%), Query Frame = 3 Query: 201 LVPAQRSKEMSVSDLPRT-EANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCR 623 L A R + + + L R +++ K H V + F+ DG ++ +D++I++W+ R + + H VR +PD ++SC D+ I WD + + + F N V FN + +ASAG D +++ WD R Sbjct: 75 LASASRDRTVRLWVLDRKGKSSEFKAHTAPVRSVDFSADGQLLVTASEDKSIKVWSMFRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFVDFNPNGTCIASAGSDHAVKIWDIR 216 HSP 2 Score: 71.633 bits (174), Expect = 4.292e-12 Identity = 41/143 (28.67%), Postives = 63/143 (44.06%), Query Frame = 3 Query: 246 PRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRSHSTEPIQIIDTFQDSV 674 P A GH+ V + +F+ GN S +DRT+RLW R +K H VR V + D L++ D+ I W + R + H V KF+ ++ S D++++ WD T Q ++ F DSV Sbjct: 49 PHARAYRYVGHKDVVTSLQFSPQGNLLASASRDRTVRLWVLDRKGKSSEFKAHTAPVRSVDFSADGQLLVTASEDKSIKVWSMFRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWD-----TTNKQCVNNFSDSV 186
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: TBL1Y_HUMAN (F-box-like/WD repeat-containing protein TBL1Y OS=Homo sapiens GN=TBL1Y PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.129e-12 Identity = 42/136 (30.88%), Postives = 67/136 (49.26%), Query Frame = 3 Query: 258 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAW---------DCRSHSTE 638 A+ L H+G + A ++N GNY LS G D+T +W+ H G + + H DV +N SC D I + ++ F+GH +EVNA+K++ ++AS D +L+ W D ++HS E Sbjct: 269 ASTLGQHKGPIFALKWNKKGNYVLSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVD-WQNNMTFASCSTDMCIHVCRLGCDHPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDACVHDLQAHSKE 403
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: PRL1_ARATH (Protein pleiotropic regulatory locus 1 OS=Arabidopsis thaliana GN=PRL1 PE=1 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.129e-12 Identity = 38/127 (29.92%), Postives = 64/127 (50.39%), Query Frame = 3 Query: 246 PRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRS 626 P V++GH G V + F+ + + DRTI++W+ G+ T H +VR + V+ ++ + S G D+Q+ WD+ +VIR + GH S V + + V+ + G D R WD R+ Sbjct: 165 PWKNYRVIQGHLGWVRSVAFDPSNEWFCTGSADRTIKIWDVATGVLKLTLTGHIEQVRGLAVSNRHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLALHPTLDVLLTGGRDSVCRVWDIRT 291 The following BLAST results are available for this feature:
BLAST of FC875609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 135
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875609 ID=FC875609; Name=FC875609; organism=Citrus clementina; type=EST; length=688bpback to top |