FC875609

Overview
NameFC875609
Unique NameFC875609
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: PFS2_CANAL (Polyadenylation factor subunit 2 OS=Candida albicans GN=PFS2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.129e-12
Identity = 32/121 (26.45%), Postives = 63/121 (52.07%), Query Frame = 3
Query:  264 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRS 626
            +++ HE  +L  +++    + LS  ++ T++ W P+   ++     H   VRD+  +P++SK ++CG D  I  W+ + G+  R   GH  EV +  ++    ++ S   D  ++ WD RS
Sbjct:  172 IMQAHESPILTMKYSNHDEWLLSGDQNGTVKYWQPNFN-NVNNISAHANGVRDIAFSPNDSKFLTCGDDSAIKIWNFNNGKEERTLSGHHWEVKSADWHPNLGLIVSGSKDNLVKLWDPRS 291          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: WDR69_XENLA (WD repeat-containing protein 69 OS=Xenopus laevis GN=wdr69 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.475e-12
Identity = 44/169 (26.04%), Postives = 79/169 (46.75%), Query Frame = 3
Query:  177 FHRNGAR*LVPAQRSKEMSVSDLPR-TEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRSHSTEPIQIIDTFQDSVMS 680
            F+  G R L+       +SV ++P     + L GH G + +A+FN D +   +   D++ +LW+   G  + T   H  EV DV        + +   D     +  S+ + + K  GHE E++ + FN   + + +A  D++ R WD   H+ E +Q++    D + S
Sbjct:  227 FNTTGDR-LITGSFDHTVSVWEIPSGRRIHTLIGHRGEISSAQFNWDCSLIATASMDKSCKLWDSLNGKCVATLTGHDDEVLDVTFDSTGQLVATASADGTARVYSASSRKCLAKLEGHEGEISKICFNAQGNRIVTASSDKTSRLWD--PHTGECLQVLKGHTDEIFS 392          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: POP1_SCHPO (WD repeat-containing protein pop1 OS=Schizosaccharomyces pombe GN=pop1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.475e-12
Identity = 41/126 (32.54%), Postives = 62/126 (49.21%), Query Frame = 3
Query:  267 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRSHSTEPI 644
            L+GH  +V      GD    +S   D T+R+W    G+ +   + H   V  V + P   + IS G D +I  W++ +G +++   GH + V+ V FN+   V ASA  D SLR WD  + S   I
Sbjct:  573 LRGHTDSVREVACLGD--LIVSASYDGTLRVWKASTGVCLHVLRGHVGRVYSVTINPSRQQCISAGTDAKIRIWNLESGELLQTLHGHSNLVSQVTFNQNILVSASAPPDTSLRVWDLNTGSCRDI 696          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: YH92_CAEEL (Uncharacterized WD repeat-containing protein ZC302.2 OS=Caenorhabditis elegans GN=ZC302.2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.927e-12
Identity = 38/139 (27.34%), Postives = 71/139 (51.08%), Query Frame = 3
Query:  267 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRSHSTEPIQIIDTFQDSVMSV 683
            + GH  +V   +F+  G Y  +   D+ I++WN     +++T   H   + D   + ++  + S   D  +  +DV +G  +R  RGH + V    FN  SS++ASAG+D+++R WD ++     ++ I    D + S+
Sbjct:  209 ISGHTKSVSVIKFSYCGKYLGTGSADKQIKVWNTVDMTYLQTLASHQLGINDFSWSSNSQFIASASDDTTVKIFDVISGACLRTMRGHTNYVFCCSFNPQSSLIASAGFDETVRVWDFKTGLC--VKCIPAHSDPITSI 345          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: Y143_SYNY3 (Uncharacterized WD repeat-containing protein slr0143 OS=Synechocystis sp. (strain PCC 6803) GN=slr0143 PE=4 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.927e-12
Identity = 42/135 (31.11%), Postives = 67/135 (49.63%), Query Frame = 3
Query:  210 AQRSKEMSVSDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAW 614
            A + + + + DL       LKGH+ +V +  F+ DG    S  +DRT+RLW+   G  +     H + V D   +PD   L+S   D QI  WD+  G +IR+F   E     V ++   +++A A  D ++R W
Sbjct:  619 AGQDQTVKIWDLDGNLLQTLKGHQDSVYSVSFSPDGEILASTSRDRTVRLWHWRSGKTLAVLGGHTKSVDDAQFSPDGQTLVSVCRDGQIRLWDLD-GNLIRQFGLPEVAFFGVNWHPNGNLLAVAADDGTVRLW 752          

HSP 2 Score: 71.633 bits (174), Expect = 4.292e-12
Identity = 36/127 (28.35%), Postives = 63/127 (49.61%), Query Frame = 3
Query:  255 EANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRSHST 635
            E NVL GH   V +   +   N   S  +D T+ LW P +G  ++ +  H   +  V  +P+     + G D+ +  WD+  G +++  +GH+  V +V F+    ++AS   D+++R W  RS  T
Sbjct:  552 EKNVLTGHRDGVTSVAISSHKNLIASASRDGTVHLWTP-QGEFLREFTGHTGSIYRVDFSPNGKIFATAGQDQTVKIWDLD-GNLLQTLKGHQDSVYSVSFSPDGEILASTSRDRTVRLWHWRSGKT 676          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: WSB2_HUMAN (WD repeat and SOCS box-containing protein 2 OS=Homo sapiens GN=WSB2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.927e-12
Identity = 38/119 (31.93%), Postives = 66/119 (55.46%), Query Frame = 3
Query:  267 LKGHEGAVLAARFNGDGNYCL-SCGKDRTIRLWNPHR-GIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWD 617
            L GH+  V    F   G+  L S  +D+T+R+W+ ++ G  I+    H + V    ++PD S L S  G++ +F W + +  +IRK  GH+S V +  F+  S+++ +A YD ++  WD
Sbjct:  149 LSGHQDVVRDLSFTPSGSLILVSASRDKTLRIWDLNKHGKQIQVLSGHLQWVYCCSISPDCSMLCSAAGEKSVFLWSMRSYTLIRKLEGHQSSVVSCDFSPDSALLVTASYDTNVIMWD 267          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: PRL2_ARATH (Protein pleiotropic regulator PRL2 OS=Arabidopsis thaliana GN=PRL2 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.927e-12
Identity = 39/127 (30.71%), Postives = 63/127 (49.61%), Query Frame = 3
Query:  246 PRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRS 626
            P     VL+GH G V +  F+    +  +   DRTI++W+   G+   T   H  +VR + V+  ++ + S G D+Q+  WD+   +VIR + GH   V  +  +    VV + G D   R WD R+
Sbjct:  159 PWKNYRVLQGHLGWVRSVAFDPSNEWFCTGSADRTIKIWDVATGVLKLTLTGHIGQVRGLAVSNRHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLHGVYCLALHPTLDVVLTGGRDSVCRVWDIRT 285          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: EBI_DROME (F-box-like/WD repeat-containing protein ebi OS=Drosophila melanogaster GN=ebi PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.516e-12
Identity = 42/136 (30.88%), Postives = 66/136 (48.53%), Query Frame = 3
Query:  258 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAW---------DCRSHSTE 638
            A+ L  H+G + A ++N  GNY LS G D+T  +W+   G   + +  H     DV     N    SC  D++I    +     I+ F+GH +EVNA+K+     ++AS   D +L+ W         D ++HS E
Sbjct:  444 ASTLGQHKGPIFALKWNKCGNYILSAGVDKTTIIWDASTGQCTQQFAFHSAPALDVD-WQTNQAFASCSTDQRIHVCRLGVNEPIKTFKGHTNEVNAIKWCPQGQLLASCSDDMTLKIWSMNRDRCCHDLQAHSKE 578          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: WDR69_DANRE (WD repeat-containing protein 69 OS=Danio rerio GN=wdr69 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.286e-12
Identity = 36/139 (25.90%), Postives = 63/139 (45.32%), Query Frame = 3
Query:  270 KGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRSHSTEPIQIIDTFQDSVMSVC 686
            +GH   ++   FN       +   D T +LW+   G  + T   H  E+  +       +L++   D     WDV +GR +    GH  E++ V+FN   S++A+A  D+S + WD  +   + +  +    D V+ VC
Sbjct:  174 RGHTAEIVCLAFNPQSTLVATGSMDTTAKLWDVESGEEVSTLAGHFAEIISLCFNTTGDRLVTGSFDHTAILWDVPSGRKVHVLSGHRGEISCVQFNWDCSLIATASLDKSCKVWD--AEGGQCLATLLGHNDEVLDVC 310          
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: PRP4_ARATH (U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Arabidopsis thaliana GN=EMB2776 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.292e-12
Identity = 40/124 (32.26%), Postives = 56/124 (45.16%), Query Frame = 3
Query:  252 TEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCR 623
            T     +GH   +    F+  G Y  +   D+T RLW+ + G  +   + H R V  +    D +   SCG D     WD+ TGR I  F+GH   V +V F+     +AS G D   R WD R
Sbjct:  330 TLLQTFEGHLDRLARVAFHPSGKYLGTTSYDKTWRLWDINTGAELLLQEGHSRSVYGIAFQQDGALAASCGLDSLARVWDLRTGRSILVFQGHIKPVFSVNFSPNGYHLASGGEDNQCRIWDLR 453          
The following BLAST results are available for this feature:
BLAST of FC875609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
PFS2_CANAL1.129e-1226.45Polyadenylation factor subunit 2 OS=Candida albica... [more]
WDR69_XENLA1.475e-1226.04WD repeat-containing protein 69 OS=Xenopus laevis ... [more]
POP1_SCHPO1.475e-1232.54WD repeat-containing protein pop1 OS=Schizosacchar... [more]
YH92_CAEEL1.927e-1227.34Uncharacterized WD repeat-containing protein ZC302... [more]
Y143_SYNY31.927e-1231.11Uncharacterized WD repeat-containing protein slr01... [more]
WSB2_HUMAN1.927e-1231.93WD repeat and SOCS box-containing protein 2 OS=Hom... [more]
PRL2_ARATH1.927e-1230.71Protein pleiotropic regulator PRL2 OS=Arabidopsis ... [more]
EBI_DROME2.516e-1230.88F-box-like/WD repeat-containing protein ebi OS=Dro... [more]
WDR69_DANRE3.286e-1225.90WD repeat-containing protein 69 OS=Danio rerio GN=... [more]
PRP4_ARATH4.292e-1232.26U4/U6 small nuclear ribonucleoprotein PRP4-like pr... [more]

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Properties
Property NameValue
Genbank descriptionC31405G12EF CTVClemen1 Citrus clementina cDNA clone C31405G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875609 ID=FC875609; Name=FC875609; organism=Citrus clementina; type=EST; length=688bp
GGAGACATGACAAATCGCTATATCACTATATCAAATCAGGAACCTAAGTT
AACAATCAATGTAATCTTTGGTTTTTGCTAATAATTACATAAAGATTCAG
GGGCTCCAACTTTATTTACTGTACTTTAAAAGCAAAATAACAATAAAAGC
CCTCAATTTCGAATTGTTTATGCTTTTTCCATCGCAACGGCGCACGGTAA
CTCGTTCCCGCTCAAAGAAGCAAAGAGATGAGCGTATCCGATCTGCCGAG
GACAGAGGCTAACGTGCTCAAGGGCCACGAAGGCGCAGTTTTAGCCGCTC
GGTTCAACGGCGACGGTAATTATTGTCTGAGTTGCGGCAAGGACCGCACC
ATCCGCTTGTGGAATCCTCACCGCGGGATTCACATCAAGACCTACAAACC
CCACGGCCGCGAAGTCCGCGACGTCCACGTTACCCCAGACAACTCGAAGT
TGATATCTTGTGGCGGTGATCGGCAAATCTTTTATTGGGATGTTTCGACT
GGTCGTGTTATTCGGAAGTTTCGTGGCCACGAAAGCGAGGTGAATGCAGT
AAAGTTTAATGAGTATTCATCAGTGGTAGCATCAGCCGGCTATGATCAAT
CCTTGCGAGCTTGGGACTGTCGATCACATAGCACTGAGCCTATTCAGATT
ATTGATACTTTTCAAGACAGTGTGATGTCTGTTTGCTT
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