FC875609
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: PFS2_CANAL (Polyadenylation factor subunit 2 OS=Candida albicans GN=PFS2 PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.129e-12 Identity = 32/121 (26.45%), Postives = 63/121 (52.07%), Query Frame = 3 Query: 264 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRS 626 +++ HE +L +++ + LS ++ T++ W P+ ++ H VRD+ +P++SK ++CG D I W+ + G+ R GH EV + ++ ++ S D ++ WD RS Sbjct: 172 IMQAHESPILTMKYSNHDEWLLSGDQNGTVKYWQPNFN-NVNNISAHANGVRDIAFSPNDSKFLTCGDDSAIKIWNFNNGKEERTLSGHHWEVKSADWHPNLGLIVSGSKDNLVKLWDPRS 291
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: WDR69_XENLA (WD repeat-containing protein 69 OS=Xenopus laevis GN=wdr69 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.475e-12 Identity = 44/169 (26.04%), Postives = 79/169 (46.75%), Query Frame = 3 Query: 177 FHRNGAR*LVPAQRSKEMSVSDLPR-TEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRSHSTEPIQIIDTFQDSVMS 680 F+ G R L+ +SV ++P + L GH G + +A+FN D + + D++ +LW+ G + T H EV DV + + D + S+ + + K GHE E++ + FN + + +A D++ R WD H+ E +Q++ D + S Sbjct: 227 FNTTGDR-LITGSFDHTVSVWEIPSGRRIHTLIGHRGEISSAQFNWDCSLIATASMDKSCKLWDSLNGKCVATLTGHDDEVLDVTFDSTGQLVATASADGTARVYSASSRKCLAKLEGHEGEISKICFNAQGNRIVTASSDKTSRLWD--PHTGECLQVLKGHTDEIFS 392
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: POP1_SCHPO (WD repeat-containing protein pop1 OS=Schizosaccharomyces pombe GN=pop1 PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.475e-12 Identity = 41/126 (32.54%), Postives = 62/126 (49.21%), Query Frame = 3 Query: 267 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRSHSTEPI 644 L+GH +V GD +S D T+R+W G+ + + H V V + P + IS G D +I W++ +G +++ GH + V+ V FN+ V ASA D SLR WD + S I Sbjct: 573 LRGHTDSVREVACLGD--LIVSASYDGTLRVWKASTGVCLHVLRGHVGRVYSVTINPSRQQCISAGTDAKIRIWNLESGELLQTLHGHSNLVSQVTFNQNILVSASAPPDTSLRVWDLNTGSCRDI 696
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: YH92_CAEEL (Uncharacterized WD repeat-containing protein ZC302.2 OS=Caenorhabditis elegans GN=ZC302.2 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.927e-12 Identity = 38/139 (27.34%), Postives = 71/139 (51.08%), Query Frame = 3 Query: 267 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRSHSTEPIQIIDTFQDSVMSV 683 + GH +V +F+ G Y + D+ I++WN +++T H + D + ++ + S D + +DV +G +R RGH + V FN SS++ASAG+D+++R WD ++ ++ I D + S+ Sbjct: 209 ISGHTKSVSVIKFSYCGKYLGTGSADKQIKVWNTVDMTYLQTLASHQLGINDFSWSSNSQFIASASDDTTVKIFDVISGACLRTMRGHTNYVFCCSFNPQSSLIASAGFDETVRVWDFKTGLC--VKCIPAHSDPITSI 345
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: Y143_SYNY3 (Uncharacterized WD repeat-containing protein slr0143 OS=Synechocystis sp. (strain PCC 6803) GN=slr0143 PE=4 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.927e-12 Identity = 42/135 (31.11%), Postives = 67/135 (49.63%), Query Frame = 3 Query: 210 AQRSKEMSVSDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAW 614 A + + + + DL LKGH+ +V + F+ DG S +DRT+RLW+ G + H + V D +PD L+S D QI WD+ G +IR+F E V ++ +++A A D ++R W Sbjct: 619 AGQDQTVKIWDLDGNLLQTLKGHQDSVYSVSFSPDGEILASTSRDRTVRLWHWRSGKTLAVLGGHTKSVDDAQFSPDGQTLVSVCRDGQIRLWDLD-GNLIRQFGLPEVAFFGVNWHPNGNLLAVAADDGTVRLW 752 HSP 2 Score: 71.633 bits (174), Expect = 4.292e-12 Identity = 36/127 (28.35%), Postives = 63/127 (49.61%), Query Frame = 3 Query: 255 EANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRSHST 635 E NVL GH V + + N S +D T+ LW P +G ++ + H + V +P+ + G D+ + WD+ G +++ +GH+ V +V F+ ++AS D+++R W RS T Sbjct: 552 EKNVLTGHRDGVTSVAISSHKNLIASASRDGTVHLWTP-QGEFLREFTGHTGSIYRVDFSPNGKIFATAGQDQTVKIWDLD-GNLLQTLKGHQDSVYSVSFSPDGEILASTSRDRTVRLWHWRSGKT 676
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: WSB2_HUMAN (WD repeat and SOCS box-containing protein 2 OS=Homo sapiens GN=WSB2 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.927e-12 Identity = 38/119 (31.93%), Postives = 66/119 (55.46%), Query Frame = 3 Query: 267 LKGHEGAVLAARFNGDGNYCL-SCGKDRTIRLWNPHR-GIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWD 617 L GH+ V F G+ L S +D+T+R+W+ ++ G I+ H + V ++PD S L S G++ +F W + + +IRK GH+S V + F+ S+++ +A YD ++ WD Sbjct: 149 LSGHQDVVRDLSFTPSGSLILVSASRDKTLRIWDLNKHGKQIQVLSGHLQWVYCCSISPDCSMLCSAAGEKSVFLWSMRSYTLIRKLEGHQSSVVSCDFSPDSALLVTASYDTNVIMWD 267
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: PRL2_ARATH (Protein pleiotropic regulator PRL2 OS=Arabidopsis thaliana GN=PRL2 PE=2 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 1.927e-12 Identity = 39/127 (30.71%), Postives = 63/127 (49.61%), Query Frame = 3 Query: 246 PRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRS 626 P VL+GH G V + F+ + + DRTI++W+ G+ T H +VR + V+ ++ + S G D+Q+ WD+ +VIR + GH V + + VV + G D R WD R+ Sbjct: 159 PWKNYRVLQGHLGWVRSVAFDPSNEWFCTGSADRTIKIWDVATGVLKLTLTGHIGQVRGLAVSNRHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLHGVYCLALHPTLDVVLTGGRDSVCRVWDIRT 285
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: EBI_DROME (F-box-like/WD repeat-containing protein ebi OS=Drosophila melanogaster GN=ebi PE=1 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 2.516e-12 Identity = 42/136 (30.88%), Postives = 66/136 (48.53%), Query Frame = 3 Query: 258 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAW---------DCRSHSTE 638 A+ L H+G + A ++N GNY LS G D+T +W+ G + + H DV N SC D++I + I+ F+GH +EVNA+K+ ++AS D +L+ W D ++HS E Sbjct: 444 ASTLGQHKGPIFALKWNKCGNYILSAGVDKTTIIWDASTGQCTQQFAFHSAPALDVD-WQTNQAFASCSTDQRIHVCRLGVNEPIKTFKGHTNEVNAIKWCPQGQLLASCSDDMTLKIWSMNRDRCCHDLQAHSKE 578
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: WDR69_DANRE (WD repeat-containing protein 69 OS=Danio rerio GN=wdr69 PE=2 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 3.286e-12 Identity = 36/139 (25.90%), Postives = 63/139 (45.32%), Query Frame = 3 Query: 270 KGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCRSHSTEPIQIIDTFQDSVMSVC 686 +GH ++ FN + D T +LW+ G + T H E+ + +L++ D WDV +GR + GH E++ V+FN S++A+A D+S + WD + + + + D V+ VC Sbjct: 174 RGHTAEIVCLAFNPQSTLVATGSMDTTAKLWDVESGEEVSTLAGHFAEIISLCFNTTGDRLVTGSFDHTAILWDVPSGRKVHVLSGHRGEISCVQFNWDCSLIATASLDKSCKVWD--AEGGQCLATLLGHNDEVLDVC 310
BLAST of FC875609 vs. ExPASy Swiss-Prot
Match: PRP4_ARATH (U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Arabidopsis thaliana GN=EMB2776 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.292e-12 Identity = 40/124 (32.26%), Postives = 56/124 (45.16%), Query Frame = 3 Query: 252 TEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKPHGREVRDVHVTPDNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVASAGYDQSLRAWDCR 623 T +GH + F+ G Y + D+T RLW+ + G + + H R V + D + SCG D WD+ TGR I F+GH V +V F+ +AS G D R WD R Sbjct: 330 TLLQTFEGHLDRLARVAFHPSGKYLGTTSYDKTWRLWDINTGAELLLQEGHSRSVYGIAFQQDGALAASCGLDSLARVWDLRTGRSILVFQGHIKPVFSVNFSPNGYHLASGGEDNQCRIWDLR 453 The following BLAST results are available for this feature:
BLAST of FC875609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 135
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875609 ID=FC875609; Name=FC875609; organism=Citrus clementina; type=EST; length=688bpback to top |