FC875612

Overview
NameFC875612
Unique NameFC875612
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875612 vs. ExPASy Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.115e-13
Identity = 37/67 (55.22%), Postives = 42/67 (62.69%), Query Frame = 2
Query:  449 KKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVTF 649
            +KS  R+R   YRG+RQRPWGKWAAEIRDP K  RVWLGTF+T               RG KAK+ F
Sbjct:   61 EKSNSRQRN--YRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNF 125          
BLAST of FC875612 vs. ExPASy Swiss-Prot
Match: EF115_ARATH (Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana GN=ERF115 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.901e-13
Identity = 34/60 (56.67%), Postives = 37/60 (61.67%), Query Frame = 2
Query:  470 RKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVTF 649
            RK  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T               +G KAK+ F
Sbjct:   88 RKRHYRGVRQRPWGKWAAEIRDPQKAARVWLGTFETAEAAALAYDNAALKFKGSKAKLNF 147          
BLAST of FC875612 vs. ExPASy Swiss-Prot
Match: EF114_ARATH (Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.236e-13
Identity = 33/60 (55.00%), Postives = 37/60 (61.67%), Query Frame = 2
Query:  470 RKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVTF 649
            R+  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T               +G KAK+ F
Sbjct:   86 RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNF 145          
BLAST of FC875612 vs. ExPASy Swiss-Prot
Match: ABR1_ARATH (Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.532e-13
Identity = 37/77 (48.05%), Postives = 46/77 (59.74%), Query Frame = 2
Query:  419 STAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVTF 649
            +TA    E +  S ++ R+ +YRG+RQRPWGKWAAEIRDP K  RVWLGTF+                RG KAK+ F
Sbjct:  165 TTATASSETSSFSGDQPRR-RYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDNAESAARAYDEAALRFRGNKAKLNF 240          
BLAST of FC875612 vs. ExPASy Swiss-Prot
Match: CRF2_ARATH (Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.043e-11
Identity = 36/84 (42.86%), Postives = 46/84 (54.76%), Query Frame = 2
Query:  404 RKSHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVTFQM 655
            R     + V  V  A  +T  ++K  +RG+RQRPWGKWAAEIRDP K VR+WLGT+NT              +RG  A   F +
Sbjct:   98 RAVKSESTVSPVVSATTTTTGEKK--FRGVRQRPWGKWAAEIRDPLKRVRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTNFSV 179          
BLAST of FC875612 vs. ExPASy Swiss-Prot
Match: PTI6_SOLLC (Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum GN=PTI6 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.363e-11
Identity = 35/81 (43.21%), Postives = 45/81 (55.56%), Query Frame = 2
Query:  407 KSHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVTF 649
            KS G    + V      T RK+   +RG+RQRPWG+WAAEIRDPT+G RVWLGT++T              ++G  A   F
Sbjct:   76 KSIGDRKRRSVSPDSDVTRRKK---FRGVRQRPWGRWAAEIRDPTRGKRVWLGTYDTPEEAAVVYDKAAVKLKGPDAVTNF 153          
BLAST of FC875612 vs. ExPASy Swiss-Prot
Match: ERF1_TOBAC (Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.363e-11
Identity = 40/95 (42.11%), Postives = 49/95 (51.58%), Query Frame = 2
Query:  383 PFTFSAGRKSHGSTAVKHVEQAKKST-----ERKRKNQYRGIRQRPWGKWAAEIRDPTK-GVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVTF 649
            PF FSAG         + V    ++T     E  R   YRG+R+RPWGK+AAEIRDP K G RVWLGT+ T              +RG KA + F
Sbjct:   67 PFNFSAGEVKSEQREEEIVVSPAETTAAPAAELPRGRHYRGVRRRPWGKFAAEIRDPAKNGARVWLGTYETDEEAAIAYDKAAYRMRGSKAHLNF 161          
BLAST of FC875612 vs. ExPASy Swiss-Prot
Match: EF102_ARATH (Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.363e-11
Identity = 34/73 (46.58%), Postives = 43/73 (58.90%), Query Frame = 2
Query:  443 QAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTK-GVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVTFQMK 658
            +  K    + K  YRG+RQRPWGK+AAEIRDP K G RVWLGTF+T              +RG KA + F ++
Sbjct:  143 EVTKPVSEEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFPLE 215          
BLAST of FC875612 vs. ExPASy Swiss-Prot
Match: CRF1_ARATH (Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.363e-11
Identity = 30/57 (52.63%), Postives = 39/57 (68.42%), Query Frame = 2
Query:  479 QYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVTF 649
            ++RG+RQRPWGKWAAEIRDP++ VRVWLGTF+T              +RG  A++ F
Sbjct:   86 KFRGVRQRPWGKWAAEIRDPSRRVRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNF 142          
BLAST of FC875612 vs. ExPASy Swiss-Prot
Match: ERF5_TOBAC (Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 34/63 (53.97%), Postives = 40/63 (63.49%), Query Frame = 2
Query:  473 KNQYRGIRQRPWGKWAAEIRDPT-KGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVTFQMK 658
            K  YRG+RQRPWGK+AAEIRDP  KG RVWLGTF+T              +RG KA V F ++
Sbjct:  142 KKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAFKLRGSKAIVNFPLE 204          
The following BLAST results are available for this feature:
BLAST of FC875612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
EF112_ARATH1.115e-1355.22Ethylene-responsive transcription factor ERF112 OS... [more]
EF115_ARATH1.901e-1356.67Ethylene-responsive transcription factor ERF115 OS... [more]
EF114_ARATH4.236e-1355.00Ethylene-responsive transcription factor ERF114 OS... [more]
ABR1_ARATH5.532e-1348.05Ethylene-responsive transcription factor ABR1 OS=A... [more]
CRF2_ARATH1.043e-1142.86Ethylene-responsive transcription factor CRF2 OS=A... [more]
PTI6_SOLLC1.363e-1143.21Pathogenesis-related genes transcriptional activat... [more]
ERF1_TOBAC1.363e-1142.11Ethylene-responsive transcription factor 1 OS=Nico... [more]
EF102_ARATH1.363e-1146.58Ethylene-responsive transcription factor 5 OS=Arab... [more]
CRF1_ARATH1.363e-1152.63Ethylene-responsive transcription factor CRF1 OS=A... [more]
ERF5_TOBAC1.780e-1153.97Ethylene-responsive transcription factor 5 OS=Nico... [more]

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Properties
Property NameValue
Genbank descriptionC31405H03EF CTVClemen1 Citrus clementina cDNA clone C31405H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875612 ID=FC875612; Name=FC875612; organism=Citrus clementina; type=EST; length=722bp
GAATCTCATCATTCACTAGACACTGAAGAATCCAAAACTCTCTCAAGCCA
ACAAAAGCAAATTTTACATTTAACCCATTCTCTCCTAAAAATCTTTTCTC
TTTAGTGCCTGAACAAACCAGAAGAAACGAGAAACCTTAACCATGTGTGG
AGGTGCTATCATTTCGGGCTACGTCCCGCCCACCGTGCCGGGCCGGCCAA
AGAAGCTGACGGCGGAGTATCTCTGGCCGGAGCTGAAGAGGTCATCCAAC
AAGAAGTACTCAAAGCCGATCGTCGACGATGACTTCGAGGCTGATTTCCA
AGGATTCAAGGACGATGAAGAAGAGTCTGACATTGATGGTGACGTGGACG
TTGATGCCGACTTGATGATGGCTGATATTAAGCCTTTCACTTTCTCAGCT
GGTCGCAAGTCTCATGGATCTACAGCCGTGAAGCACGTTGAACAAGCTAA
AAAATCCACAGAAAGAAAGAGGAAGAATCAATATAGGGGAATTAGGCAGC
GTCCATGGGGAAAATGGGCTGCTGAGATCCGTGACCCCACAAAAGGGGTT
CGTGTCTGGCTAGGAACTTTCAATACCGCTGAAGAAGCCGCTAGGGCTTA
TGATGCCGAGGCACGGAGGATCCGTGGGAAGAAAGCTAAGGTTACTTTCC
AGATGAAACTCCTGCTGCTGCTCCAAGAGCTCAGTGAAAGCAACTCTCAG
AATCCGTTCCAAAGCTGCTAGC
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