FC875619

Overview
NameFC875619
Unique NameFC875619
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875619 vs. ExPASy Swiss-Prot
Match: NPD_THEMA (NAD-dependent deacetylase OS=Thermotoga maritima GN=npdA PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.834e-17
Identity = 50/120 (41.67%), Postives = 64/120 (53.33%), Query Frame = 2
Query:  314 INQFAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFFXXXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDC 670
            +N+    + LTGAGIST  GIPD+R PNG Y    + +    FF                    + A+PN AH  LA LE+ G I+ +ITQN+DRLH RAGS   +ELHG V    C+ C
Sbjct:   10 LNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYSQNVFDIDFFYSHPEEFYRFAKEGIFP--MLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRC 127          
BLAST of FC875619 vs. ExPASy Swiss-Prot
Match: NPD1_BRAJA (NAD-dependent deacetylase 1 OS=Bradyrhizobium japonicum GN=npdA1 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.834e-17
Identity = 52/126 (41.27%), Postives = 68/126 (53.97%), Query Frame = 2
Query:  326 AKLIV-LTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFFXXXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAG---SNPLELHGTVYTVVCLDCGFSFCRD 691
            AK IV  TGAGISTECGIPD+RSP G ++   +PI    F                    F AA+P   H ALASL +AG++  +ITQN+D LH  +G    + +ELHG      C+ CG ++  D
Sbjct:   22 AKTIVPFTGAGISTECGIPDFRSPGGIWTRN-RPIPFDGFVASQEARDESWRRRFAMEETFAAARPGRGHRALASLYRAGKVPAVITQNIDNLHQASGFAHEHVIELHGNTTYARCVGCGQTYQLD 146          
BLAST of FC875619 vs. ExPASy Swiss-Prot
Match: NPD3_PSESM (NAD-dependent deacetylase 3 OS=Pseudomonas syringae pv. tomato GN=npdA3 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.702e-17
Identity = 52/125 (41.60%), Postives = 71/125 (56.80%), Query Frame = 2
Query:  335 IVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFFXXXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCGFSFCRDLFQDQ 706
            +V+TGAGIST  GIPDYR  +G    G +P+ +Q+F                      A+Q N AH ALA+L+    I  +ITQNVD LH +AGS + +ELHG+++ V+CLDC     R   Q+Q
Sbjct:   23 LVVTGAGISTASGIPDYRDKDGV-RRGAQPMMYQEFVGNPAARQRYWARAMLGWPRISASQANAAHRALAALQAENLIKGLITQNVDALHTQAGSQDVIELHGSLHRVLCLDCQQRSDRTAIQEQ 146          
BLAST of FC875619 vs. ExPASy Swiss-Prot
Match: NPD1_STRCO (NAD-dependent deacetylase 1 OS=Streptomyces coelicolor GN=npdA1 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.077e-16
Identity = 56/138 (40.58%), Postives = 73/138 (52.90%), Query Frame = 2
Query:  284 PDAD-PPSIEDINQFAK------LIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFFXXXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCG 673
            P AD PP   D+   A       ++VL+GAGISTE GIPDYR   G+ S    P+T+Q F                    F  A+PN  H ++A+  + G +  +ITQNVD LH  AGS   +ELHG++  VVCL CG
Sbjct:   11 PGADLPPGTTDLAPVADALRAGGVLVLSGAGISTESGIPDYRGEGGSLSR-HTPMTYQDFTAHPEARRRYWARSHLGWRTFGRARPNAGHRSVAAFGRHGLLTGVITQNVDGLHQAAGSEGVVELHGSLDRVVCLSCG 147          
BLAST of FC875619 vs. ExPASy Swiss-Prot
Match: NPD1_PYRAE (NAD-dependent deacetylase 1 OS=Pyrobaculum aerophilum GN=npdA1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.837e-16
Identity = 47/119 (39.50%), Postives = 66/119 (55.46%), Query Frame = 2
Query:  335 IVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFFXXXXXXXXXXXXXXXXXXXFMA--AQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCGFSF 682
            + LTGAG+ST  GIPD+R P G +    + +  ++F                      A   +PNPAH+ALA +E+ G++  +ITQNVDRLH  AGS N +ELHG +   VC +CG  +
Sbjct:   24 VALTGAGVSTASGIPDFRGPQGVW----RRVDPEKFEISYFYNNPDEVWDLFVKYLLPAFNVKPNPAHYALAEMERLGKLCAVITQNVDRLHQAAGSKNVIELHGALEYAVCTNCGSKY 138          
BLAST of FC875619 vs. ExPASy Swiss-Prot
Match: NPD_CLOAB (NAD-dependent deacetylase OS=Clostridium acetobutylicum GN=npdA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.134e-16
Identity = 47/131 (35.88%), Postives = 72/131 (54.96%), Query Frame = 2
Query:  314 INQFAKLIVLTGAGISTECGIPDYRSPNGAYSS----GFKP---ITHQQFFXXXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCGFSF 682
            + + + ++   GAG+STE  IPD+RS NG Y +     + P   ++H  F                    F  A+PN AH++LA +E+ G++  ++TQN+D LH  AGS N  ELHG+++   C+DCG SF
Sbjct:   14 VAESSSIVFFGGAGVSTESNIPDFRSENGLYKTKNNFSYPPEVMLSHTFF----KNHTEDFFEFYREKMIFKDAKPNAAHYSLAKIEEQGKLKAIVTQNIDGLHQLAGSKNVYELHGSIHRNYCMDCGKSF 140          
BLAST of FC875619 vs. ExPASy Swiss-Prot
Match: NPD_BORPE (NAD-dependent deacetylase OS=Bordetella pertussis GN=npdA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.093e-16
Identity = 49/115 (42.61%), Postives = 60/115 (52.17%), Query Frame = 2
Query:  329 KLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFFXXXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDC 670
            +L VLTGAG ST  GIPDYR   G +     PI  Q F                    F  A+PN AH ALA L + G++D ++TQNVDRLH  AG    L+LHG +  V C+ C
Sbjct:   20 RLFVLTGAGCSTASGIPDYRDGQGQWKRK-PPIDFQAFMGGQPARARYWARSMVGWRHFGQARPNAAHHALARLAQRGQVDLLVTQNVDRLHQAAGGREVLDLHGRLDEVRCMQC 133          
BLAST of FC875619 vs. ExPASy Swiss-Prot
Match: NPD_BORBR (NAD-dependent deacetylase OS=Bordetella bronchiseptica GN=npdA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.093e-16
Identity = 49/115 (42.61%), Postives = 60/115 (52.17%), Query Frame = 2
Query:  329 KLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFFXXXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDC 670
            +L VLTGAG ST  GIPDYR   G +     PI  Q F                    F  A+PN AH ALA L + G++D ++TQNVDRLH  AG    L+LHG +  V C+ C
Sbjct:   20 RLFVLTGAGCSTASGIPDYRDGQGQWKRK-PPIDFQAFMGGQPARARYWARSMVGWRHFGQARPNAAHHALARLAQRGQVDLLVTQNVDRLHQAAGGREVLDLHGRLDEVRCMQC 133          
BLAST of FC875619 vs. ExPASy Swiss-Prot
Match: NPD_SULSO (NAD-dependent deacetylase OS=Sulfolobus solfataricus GN=npdA PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.118e-16
Identity = 50/123 (40.65%), Postives = 66/123 (53.66%), Query Frame = 2
Query:  308 EDINQFAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFFXXXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTV---YTVVCL 664
            E++   +  I  TGAGIST  GIPD+R P G +      +   ++F                      AQPN AH++LA LEK G I  +ITQN+D LH +AGS N +ELHGT+   Y V+CL
Sbjct:    8 EELISSSYTIAFTGAGISTASGIPDFRGPQGLWKKYSPELASIEYFEKDPKNFWGFYSLRMRG--LFEAQPNKAHYSLAELEKMGIIKVIITQNIDGLHQKAGSKNVIELHGTMRRSYCVLCL 128          
BLAST of FC875619 vs. ExPASy Swiss-Prot
Match: NPD_RHOPA (NAD-dependent deacetylase OS=Rhodopseudomonas palustris GN=npdA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.118e-16
Identity = 47/119 (39.50%), Postives = 63/119 (52.94%), Query Frame = 2
Query:  326 AKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFFXXXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAG---SNPLELHGTVYTVVCLDCG 673
            + ++  TGAGISTE GIPD+RSP G +S   +PI   +F                    F  A+P   H ALASL KAG++  +ITQN+D LH  +G    + +ELHG      C+ CG
Sbjct:   21 SSIVPFTGAGISTESGIPDFRSPGGLWSRN-QPIPFDEFVARQDARDEAWRRRFAMEQTFAKARPARGHRALASLYKAGKVPAIITQNIDNLHQVSGFAEHDVVELHGNTTYARCIGCG 138          
The following BLAST results are available for this feature:
BLAST of FC875619 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
NPD_THEMA2.834e-1741.67NAD-dependent deacetylase OS=Thermotoga maritima G... [more]
NPD1_BRAJA2.834e-1741.27NAD-dependent deacetylase 1 OS=Bradyrhizobium japo... [more]
NPD3_PSESM3.702e-1741.60NAD-dependent deacetylase 3 OS=Pseudomonas syringa... [more]
NPD1_STRCO1.077e-1640.58NAD-dependent deacetylase 1 OS=Streptomyces coelic... [more]
NPD1_PYRAE1.837e-1639.50NAD-dependent deacetylase 1 OS=Pyrobaculum aerophi... [more]
NPD_CLOAB3.134e-1635.88NAD-dependent deacetylase OS=Clostridium acetobuty... [more]
NPD_BORPE4.093e-1642.61NAD-dependent deacetylase OS=Bordetella pertussis ... [more]
NPD_BORBR4.093e-1642.61NAD-dependent deacetylase OS=Bordetella bronchisep... [more]
NPD_SULSO9.118e-1640.65NAD-dependent deacetylase OS=Sulfolobus solfataric... [more]
NPD_RHOPA9.118e-1639.50NAD-dependent deacetylase OS=Rhodopseudomonas palu... [more]

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Properties
Property NameValue
Genbank descriptionC31405H11EF CTVClemen1 Citrus clementina cDNA clone C31405H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875619 ID=FC875619; Name=FC875619; organism=Citrus clementina; type=EST; length=721bp
GAAGGAAATTCATCAAAAGAATACAACTATGCTTCTGCGTTTGCCTTTTT
TCTCTGCTTCGAGAAATTCTTCTGGAATGCTTGCGAGGGTTAAGTCAGAA
ATTGTTCAATCAAGTATCAAAGCACAGCAATTGCTGAGCAAAGGAAGAAG
GGTATTCCCTCTTCAGGGTTCTGTAAAGTTTGTACAAACATCATGCCGAA
TGTCAATTCCTGGGTTACCATCATCAAGACATGAAGACAAGGCACCTGCA
TCTCCTAAAGTTTTGAGGGACAAGAAGGCAGTTCCTGATGCAGACCCTCC
AAGCATTGAAGACATCAATCAATTTGCCAAGCTCATTGTATTGACAGGAG
CTGGAATTAGCACAGAATGTGGAATTCCTGATTATAGAAGTCCGAATGGA
GCTTACAGTTCTGGATTTAAACCAATTACCCATCAGCAATTTTTTCGTTC
AAGTCGAGCTCGTAGACGGTATTGGGCTAGAAGCTATGCTGGATGGAGAC
GGTTTATGGCAGCACAGCCTAATCCAGCTCATTTTGCTTTAGCATCTCTT
GAAAAAGCTGGGAGGATAGATTGTATGATTACTCAAAATGTCGACAGATT
ACATCATCGTGCAGGGAGCAATCCACTCGAATTACATGGGACTGTATATA
CTGTTGTTTGTTTAGATTGTGGTTTTTCCTTTTGTCGGGATTTGTTTCAA
GACCAGTGAAAGCCCTTAATC
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