FC875619

Overview
NameFC875619
Unique NameFC875619
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875619 vs. ExPASy Swiss-Prot
Match: NPD_PROAC (NAD-dependent deacetylase OS=Propionibacterium acnes GN=npdA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.246e-14
Identity = 45/124 (36.29%), Postives = 65/124 (52.42%), Query Frame = 2
Query:  314 INQFAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFFXXXXXXXXXXXXXXXXXXXFMA---AQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCG 673
            I +    +   GAG+STE GIPD+RS  G Y++        ++                    ++    A+PN  H ALA+LE+AG++  +ITQN+D LH  AGS   +ELHG+V+   CL CG
Sbjct:   10 IEESTSTVFFGGAGMSTESGIPDFRSAGGLYTTQHDLPFPAEYMLSHSCLVEHPAEFFDFYRTYLVHPQARPNAGHRALAALERAGQVSTIITQNIDGLHQEAGSRQVIELHGSVHRNRCLACG 133          
BLAST of FC875619 vs. ExPASy Swiss-Prot
Match: NPD_CLOTE (NAD-dependent deacetylase OS=Clostridium tetani GN=npdA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.246e-14
Identity = 50/133 (37.59%), Postives = 67/133 (50.38%), Query Frame = 2
Query:  308 EDINQFAKLIVLTGAGISTECGIPDYRSPNGAYSS----GFKP---ITHQQFFXXXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCGFSF 682
            E I   + ++   GAG+STE  IPD+RS  G Y +     + P   ++H  F                    +  A+PN AH ALA LEK G++  +ITQN+D LH  AGS N +ELHG V    C+DC   F
Sbjct:    9 ELIKSSSNIVFFGGAGVSTESNIPDFRSEEGLYKTKSNFSYSPEVMLSHSFF----KEHTEDFFDFYKEKMIYKYAKPNLAHHALAKLEKVGKLKAIITQNIDGLHQLAGSKNVIELHGGVGRNYCMDCNKFF 137          
BLAST of FC875619 vs. ExPASy Swiss-Prot
Match: NPD_CHRVO (NAD-dependent deacetylase OS=Chromobacterium violaceum GN=npdA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.534e-14
Identity = 47/117 (40.17%), Postives = 61/117 (52.14%), Query Frame = 2
Query:  329 KLIVLTGAGISTECGIPDYRSPNGAYSSGFK--PITHQQFFXXXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDC 670
            ++ VLTGAG+STE GIPD+RS +G +S            +F                       QPN  H  LA+LE +G+   ++TQN+D LH RAGS   LELHGT+ T  C DC
Sbjct:   20 RIAVLTGAGMSTESGIPDFRSADGLWSRDMSLTDAVSVDYFRRDPAAFWRAFRDIFHIKLVGDYQPNDGHRFLAALEASGKEVTILTQNIDGLHGRAGSRRVLELHGTLLTASCPDC 136          
BLAST of FC875619 vs. ExPASy Swiss-Prot
Match: NPD2_PYRAE (NAD-dependent deacetylase 2 OS=Pyrobaculum aerophilum GN=npdA2 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.534e-14
Identity = 46/129 (35.66%), Postives = 65/129 (50.39%), Query Frame = 2
Query:  335 IVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFFXXXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSN-PLELHGTVYTVVCLDCGFSFCRDLFQDQ*KPL 718
            +V TGAGIS E G+P +R P G +   +KP                             A+P+P H+A+A LE  G +  +ITQNVD LH RAGS   +ELHG+++   C+ CG  +  D   ++  PL
Sbjct:   14 VVFTGAGISAESGVPTFRGPGGLWER-YKPEELATPEAFARDPALVWRWYKWRQEVIYNARPSPGHYAIAELEAMGVVRGVITQNVDGLHQRAGSRLVVELHGSIWRARCVKCGSVYILDKPVEEVPPL 141          
BLAST of FC875619 vs. ExPASy Swiss-Prot
Match: NPD_PYRAB (NAD-dependent deacetylase OS=Pyrococcus abyssi GN=npdA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.534e-14
Identity = 43/115 (37.39%), Postives = 59/115 (51.30%), Query Frame = 2
Query:  335 IVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFFXXXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCGF 676
            I  TGAGIS E G+P +R  +G ++  ++P                           + A+PNPAH+AL  LE  G +  +ITQNVD LH  AG+ N +ELHG ++ V C  C F
Sbjct:   16 IAFTGAGISAESGVPTFRGKDGLWNK-YRPEELATPEAFARNPKLVWEFYKWRINKILKAKPNPAHYALVELEDMGILRAVITQNVDDLHREAGTRNLIELHGNIFRVKCTKCNF 129          
BLAST of FC875619 vs. ExPASy Swiss-Prot
Match: NPD2_GEOKA (NAD-dependent deacetylase 2 OS=Geobacillus kaustophilus GN=npdA2 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.115e-13
Identity = 45/123 (36.59%), Postives = 62/123 (50.41%), Query Frame = 2
Query:  314 INQFAKLIVLTGAGISTECGIPDYRSPNGAYS--SGFKPITHQQFFXXXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCG 673
            I +   + VLTGAG+STE GIPD+RS NG Y+     +    + ++                        PN  H  L  LE+ G+   ++TQN+D LH +AGS N +ELHGT+ T  C  CG
Sbjct:   11 IKEANTIAVLTGAGMSTESGIPDFRSENGLYAQEDNVEYYLSEYYYKKDPVDFWRRFKRMFSLKMMGGFAPNDGHRFLRWLEEMGKTVTILTQNIDGLHTKAGSTNVIELHGTLQTATCPSCG 133          
BLAST of FC875619 vs. ExPASy Swiss-Prot
Match: NPD_PYRKO (NAD-dependent deacetylase OS=Pyrococcus kodakaraensis GN=npdA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.456e-13
Identity = 46/117 (39.32%), Postives = 60/117 (51.28%), Query Frame = 2
Query:  335 IVLTGAGISTECGIPDYRSPNGAYSS--GFKPITHQQFFXXXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGF 676
            I  TGAGIS E GIP +R  NG + +    +  T + F                     + A+PNPAH ALA LE  G +  +ITQNVD LH  AGS   +ELHG ++ V C+ C +
Sbjct:   16 IAFTGAGISAESGIPTFRGRNGLWKTYRAEELATPEAF---KRDPHLVWEFYKWRMRKILKAEPNPAHKALAELENMGVLKAVITQNVDDLHREAGSRKVVELHGNIFRVRCVSCSY 129          
BLAST of FC875619 vs. ExPASy Swiss-Prot
Match: NPD_BACSU (NAD-dependent deacetylase OS=Bacillus subtilis GN=npdA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.456e-13
Identity = 43/123 (34.96%), Postives = 64/123 (52.03%), Query Frame = 2
Query:  314 INQFAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQ--QFFXXXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPL-ELHGTVYTVVCLDCG 673
            +++  +++VLTGAG+STE GIPD+RS  G ++     +      +F                     + +PN  H  LA LEK G+   + TQN+D LH +AGS  + ELHG++ T  C  CG
Sbjct:    8 LHEAQRIVVLTGAGMSTESGIPDFRSAGGIWTEDASRMEAMSLDYFLSYPRLFWPKFKELFQMKMSGSFEPNEGHLLLAELEKQGKQVDIFTQNIDGLHKKAGSRHVYELHGSIQTAACPACG 130          
BLAST of FC875619 vs. ExPASy Swiss-Prot
Match: NPD2_STRCO (NAD-dependent deacetylase 2 OS=Streptomyces coelicolor GN=npdA2 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.243e-13
Identity = 46/118 (38.98%), Postives = 62/118 (52.54%), Query Frame = 2
Query:  338 VLTGAGISTECGIPDYRSPNGAY---SSGFKPITHQQFFXXXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP---LELHGTVYTVVCLDCG 673
            +L+GAG+ST+ GIPDYR PNG +       K +T++ +                     + A+PN AH A+A LE+ G    ++TQNVD LH  AG +    LELHGT    VC  CG
Sbjct:    9 ILSGAGVSTDSGIPDYRGPNGLWRRDPEAEKLVTYEYYMGDPEIRRRSWLMRRDSAA--LHAEPNAAHRAVADLERRGVPVRVLTQNVDGLHQLAGVSARKVLELHGTARDCVCTGCG 124          
BLAST of FC875619 vs. ExPASy Swiss-Prot
Match: NPD1_GEOKA (NAD-dependent deacetylase 1 OS=Geobacillus kaustophilus GN=npdA1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.532e-13
Identity = 43/116 (37.07%), Postives = 56/116 (48.28%), Query Frame = 2
Query:  335 IVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFFXXXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCGFS 679
            +VLTGAG+STE G+PD+RSP     + F P                              QP+  H  LA  E+ G +  ++TQNVD  H  AGS   +ELHG++ TV C  CG S
Sbjct:   14 VVLTGAGMSTESGLPDFRSPRTGLWARFNPSELATIDALYHRRESFVEFYQYRIRTLQQCQPHDGHRLLADWERRGIVQTIVTQNVDGFHQEAGSRRVIELHGSLRTVHCQRCGES 129          
The following BLAST results are available for this feature:
BLAST of FC875619 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
NPD_PROAC2.246e-1436.29NAD-dependent deacetylase OS=Propionibacterium acn... [more]
NPD_CLOTE2.246e-1437.59NAD-dependent deacetylase OS=Clostridium tetani GN... [more]
NPD_CHRVO6.534e-1440.17NAD-dependent deacetylase OS=Chromobacterium viola... [more]
NPD2_PYRAE6.534e-1435.66NAD-dependent deacetylase 2 OS=Pyrobaculum aerophi... [more]
NPD_PYRAB8.534e-1437.39NAD-dependent deacetylase OS=Pyrococcus abyssi GN=... [more]
NPD2_GEOKA1.115e-1336.59NAD-dependent deacetylase 2 OS=Geobacillus kaustop... [more]
NPD_PYRKO1.456e-1339.32NAD-dependent deacetylase OS=Pyrococcus kodakaraen... [more]
NPD_BACSU1.456e-1334.96NAD-dependent deacetylase OS=Bacillus subtilis GN=... [more]
NPD2_STRCO3.243e-1338.98NAD-dependent deacetylase 2 OS=Streptomyces coelic... [more]
NPD1_GEOKA5.532e-1337.07NAD-dependent deacetylase 1 OS=Geobacillus kaustop... [more]

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Properties
Property NameValue
Genbank descriptionC31405H11EF CTVClemen1 Citrus clementina cDNA clone C31405H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875619 ID=FC875619; Name=FC875619; organism=Citrus clementina; type=EST; length=721bp
GAAGGAAATTCATCAAAAGAATACAACTATGCTTCTGCGTTTGCCTTTTT
TCTCTGCTTCGAGAAATTCTTCTGGAATGCTTGCGAGGGTTAAGTCAGAA
ATTGTTCAATCAAGTATCAAAGCACAGCAATTGCTGAGCAAAGGAAGAAG
GGTATTCCCTCTTCAGGGTTCTGTAAAGTTTGTACAAACATCATGCCGAA
TGTCAATTCCTGGGTTACCATCATCAAGACATGAAGACAAGGCACCTGCA
TCTCCTAAAGTTTTGAGGGACAAGAAGGCAGTTCCTGATGCAGACCCTCC
AAGCATTGAAGACATCAATCAATTTGCCAAGCTCATTGTATTGACAGGAG
CTGGAATTAGCACAGAATGTGGAATTCCTGATTATAGAAGTCCGAATGGA
GCTTACAGTTCTGGATTTAAACCAATTACCCATCAGCAATTTTTTCGTTC
AAGTCGAGCTCGTAGACGGTATTGGGCTAGAAGCTATGCTGGATGGAGAC
GGTTTATGGCAGCACAGCCTAATCCAGCTCATTTTGCTTTAGCATCTCTT
GAAAAAGCTGGGAGGATAGATTGTATGATTACTCAAAATGTCGACAGATT
ACATCATCGTGCAGGGAGCAATCCACTCGAATTACATGGGACTGTATATA
CTGTTGTTTGTTTAGATTGTGGTTTTTCCTTTTGTCGGGATTTGTTTCAA
GACCAGTGAAAGCCCTTAATC
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