FC875619

Overview
NameFC875619
Unique NameFC875619
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875619 vs. ExPASy Swiss-Prot
Match: NPD_BACHK (NAD-dependent deacetylase OS=Bacillus thuringiensis subsp. konkukian GN=npdA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.116e-12
Identity = 42/116 (36.21%), Postives = 60/116 (51.72%), Query Frame = 2
Query:  329 KLIVLTGAGISTECGIPDYRSPNGAYS-SGFKPITHQQFFXXXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDC 670
            K+ VLTGAG STE GIPD+RS NG Y+ +  +    + ++                   F   +PN  H  LA LE+ G+   ++TQN+D LH    S + ++LHGT+ T  C  C
Sbjct:   19 KITVLTGAGASTESGIPDFRSANGLYADANVEMYLSRGYYNRSPKEFWKHYKEIFQINTFHQYKPNRGHRFLAELEEQGKDITILTQNIDGLHQLGDSKHVIDLHGTLQTAHCPKC 134          
BLAST of FC875619 vs. ExPASy Swiss-Prot
Match: NPD_THET2 (NAD-dependent deacetylase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=npdA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.988e-12
Identity = 46/128 (35.94%), Postives = 62/128 (48.44%), Query Frame = 2
Query:  314 INQFAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFFXXXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEK----AGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCGFSF 682
            + +  ++ VLTGAGIS   GIP +R   G + + F P+ +                          A+PNPAH+AL  LE+     G    ++TQNVD LH RAGS N +ELHG +    C  CG  F
Sbjct:   11 LEEAKRVAVLTGAGISKPSGIPTFRDAEGLWKN-FNPLDYATPEAYARDPEKVWAWYAWRIQKVREAKPNPAHYALVELERRILSRGGSFLLVTQNVDGLHARAGSQNLVELHGNLLRARCEACGKRF 137          
BLAST of FC875619 vs. ExPASy Swiss-Prot
Match: NPD1_PSEAE (NAD-dependent deacetylase 1 OS=Pseudomonas aeruginosa GN=npdA1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.988e-12
Identity = 46/132 (34.85%), Postives = 66/132 (50.00%), Query Frame = 2
Query:  329 KLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFFXXXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRI--DCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCGFSFCRDLFQDQ*KP 715
            +L++ TGAG+S E GIP +R   G   + + P                           +  QPNPAH A+A+L  +GRI    ++TQNVD LH RAGS + L LHG+++   C  C  ++ RD   D  +P
Sbjct:   13 RLVIFTGAGVSAESGIPTFRDALGGLWARYDPAALATPAAFADDPALVWGWYEWRRLKVLGVQPNPAHRAIAAL--SGRIANTRLVTQNVDDLHERAGSRDVLHLHGSLHAPRCATCAAAY-RDALPDSVEP 141          
BLAST of FC875619 vs. ExPASy Swiss-Prot
Match: NPD_BDEBA (NAD-dependent deacetylase OS=Bdellovibrio bacteriovorus GN=npdA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 48/137 (35.04%), Postives = 64/137 (46.72%), Query Frame = 2
Query:  311 DINQFAKLIVLTGAGISTECGIPDYRSPNGAYSS-GFKPITHQQFFXXXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRID-CMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCG--FSFCRDLFQDQ 706
            D+  F  +++LTGAGIS E GI  +R  +G +     + +   + F                        PNPAH AL  LE     +  ++TQNVD LH RAGS N L +HG +  V CL C   F +  DL  DQ
Sbjct:    2 DLRLFKNIVILTGAGISAESGIRTFRDQDGLWEDHRIEDVATPEAFARNPALVQRFYNLRRAQLRDPNLAPNPAHQALVDLENLWEGNFLLVTQNVDNLHRRAGSKNLLHMHGRLDRVFCLHCDEHFEWLLDLAVDQ 138          
BLAST of FC875619 vs. ExPASy Swiss-Prot
Match: SIRT6_HUMAN (NAD-dependent deacetylase sirtuin-6 OS=Homo sapiens GN=SIRT6 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 48/163 (29.45%), Postives = 74/163 (45.40%), Query Frame = 2
Query:  242 APASPKVLRDKKAVPDA-DPPSIED---------INQFAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFFXXXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAG---SNPLELHGTVYTVVCLDCGFSFCRD 691
            A  SP   + K  +P+  DPP   +         + Q + ++  TGAGIST  GIPD+R P+G ++   + +  +                      F +A+P   H AL  LE+ G +  +++QNVD LH R+G       ELHG ++   C  C   + RD
Sbjct:    7 AGLSPYADKGKCGLPEIFDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPHGVWTMEERGLAPK------------------FDTTFESARPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRD 151          
BLAST of FC875619 vs. ExPASy Swiss-Prot
Match: NPD_LISMF (NAD-dependent deacetylase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=npdA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.035e-11
Identity = 42/125 (33.60%), Postives = 60/125 (48.00%), Query Frame = 2
Query:  308 EDINQFAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFFXXXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFS 679
            E + +   ++ LTGAG+S   GIPDYRS NG Y +G     +                       +  A+PN  H  +A +E A +   +ITQN+D LH +AGS   +  HG++Y   C  CG S
Sbjct:    6 EALKKAEHIVFLTGAGVSVPSGIPDYRSKNGLY-AGMSSPEYMLSHTCLVREPEKFYQFVTENMYYPDAEPNAIHTKMAEIE-AEKDVTIITQNIDGLHEKAGSKKVVNFHGSLYHCYCQKCGMS 128          
BLAST of FC875619 vs. ExPASy Swiss-Prot
Match: NPD_LISIN (NAD-dependent deacetylase OS=Listeria innocua GN=npdA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.964e-11
Identity = 44/125 (35.20%), Postives = 59/125 (47.20%), Query Frame = 2
Query:  308 EDINQFAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFFXXXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFS 679
            E I Q   ++ LTGAG+S   GIPDYRS NG Y +G     +                       +  A PN  H  +A +E A +   +ITQN+D LH +AGS   +  HG++Y   C  CG S
Sbjct:    6 EAIKQAEHIVFLTGAGVSVPSGIPDYRSKNGLY-AGMSSPEYMLSHTCLVREPEKFYQFVTENMYYPDAVPNTIHRKMAEIE-ADKNVTVITQNIDGLHEKAGSKKVVNFHGSLYHCYCQKCGRS 128          
BLAST of FC875619 vs. ExPASy Swiss-Prot
Match: NPD_THET8 (NAD-dependent deacetylase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=npdA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.178e-11
Identity = 45/128 (35.16%), Postives = 61/128 (47.66%), Query Frame = 2
Query:  314 INQFAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFFXXXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEK----AGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCGFSF 682
            + +  ++ VLTGAGIS   GIP +R   G + + F P+ +                          A+PNPAH+AL  LE+     G    ++TQNVD LH  AGS N +ELHG +    C  CG  F
Sbjct:   11 LEEARRVAVLTGAGISKPSGIPTFRDAEGLWKN-FNPLDYATPEAYARDPEKVWAWYAWRIQKVREAKPNPAHYALVELERRILSRGGSFLLVTQNVDGLHALAGSQNLVELHGNLLRARCEACGKRF 137          
BLAST of FC875619 vs. ExPASy Swiss-Prot
Match: NPD_FUSNN (NAD-dependent deacetylase OS=Fusobacterium nucleatum subsp. nucleatum GN=npdA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.762e-11
Identity = 41/121 (33.88%), Postives = 57/121 (47.11%), Query Frame = 2
Query:  332 LIVLTGAGISTECGIPDYRSPNGAYSSGFKP------ITHQQFFXXXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCG 673
            L+   GAG ST+ G+ D+R  +G Y + +K       +    FF                       +PN  H AL  LEK G +  +ITQN+D LH  +G+ N LELHG++    CL CG
Sbjct:   22 LVFFGGAGTSTDSGVKDFRGKDGLYKTLYKDKYRPEEVLSSDFFYSHRDIFMKYVEKELN---IKGLKPNKGHMALVELEKIGILKAVITQNIDDLHQVSGNKNVLELHGSLKRWYCLSCG 139          
BLAST of FC875619 vs. ExPASy Swiss-Prot
Match: NPD1_THETN (NAD-dependent deacetylase 1 OS=Thermoanaerobacter tengcongensis GN=npdA1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.762e-11
Identity = 43/124 (34.68%), Postives = 58/124 (46.77%), Query Frame = 2
Query:  308 EDINQFAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFFXXXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCGF 676
            E + Q    +VLTGAGIS E GIP +R  +G +   + P      +                      A+PN  H  +A  E+  +   +ITQNVD LH  AGS N +ELHG ++ V C  C F
Sbjct:    8 EKLPQSNLTVVLTGAGISKESGIPTFRGEDGLWKK-YNPEELATPWAFQRNPALVWEWYDYRRRIISKAKPNKCHLLIAEFEERFKNVRVITQNVDGLHEAAGSTNVIELHGNIWKVKCTKCDF 130          
The following BLAST results are available for this feature:
BLAST of FC875619 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
NPD_BACHK6.116e-1236.21NAD-dependent deacetylase OS=Bacillus thuringiensi... [more]
NPD_THET27.988e-1235.94NAD-dependent deacetylase OS=Thermus thermophilus ... [more]
NPD1_PSEAE7.988e-1234.85NAD-dependent deacetylase 1 OS=Pseudomonas aerugin... [more]
NPD_BDEBA1.780e-1135.04NAD-dependent deacetylase OS=Bdellovibrio bacterio... [more]
SIRT6_HUMAN2.324e-1129.45NAD-dependent deacetylase sirtuin-6 OS=Homo sapien... [more]
NPD_LISMF3.035e-1133.60NAD-dependent deacetylase OS=Listeria monocytogene... [more]
NPD_LISIN3.964e-1135.20NAD-dependent deacetylase OS=Listeria innocua GN=n... [more]
NPD_THET85.178e-1135.16NAD-dependent deacetylase OS=Thermus thermophilus ... [more]
NPD_FUSNN6.762e-1133.88NAD-dependent deacetylase OS=Fusobacterium nucleat... [more]
NPD1_THETN6.762e-1134.68NAD-dependent deacetylase 1 OS=Thermoanaerobacter ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31405H11EF CTVClemen1 Citrus clementina cDNA clone C31405H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875619 ID=FC875619; Name=FC875619; organism=Citrus clementina; type=EST; length=721bp
GAAGGAAATTCATCAAAAGAATACAACTATGCTTCTGCGTTTGCCTTTTT
TCTCTGCTTCGAGAAATTCTTCTGGAATGCTTGCGAGGGTTAAGTCAGAA
ATTGTTCAATCAAGTATCAAAGCACAGCAATTGCTGAGCAAAGGAAGAAG
GGTATTCCCTCTTCAGGGTTCTGTAAAGTTTGTACAAACATCATGCCGAA
TGTCAATTCCTGGGTTACCATCATCAAGACATGAAGACAAGGCACCTGCA
TCTCCTAAAGTTTTGAGGGACAAGAAGGCAGTTCCTGATGCAGACCCTCC
AAGCATTGAAGACATCAATCAATTTGCCAAGCTCATTGTATTGACAGGAG
CTGGAATTAGCACAGAATGTGGAATTCCTGATTATAGAAGTCCGAATGGA
GCTTACAGTTCTGGATTTAAACCAATTACCCATCAGCAATTTTTTCGTTC
AAGTCGAGCTCGTAGACGGTATTGGGCTAGAAGCTATGCTGGATGGAGAC
GGTTTATGGCAGCACAGCCTAATCCAGCTCATTTTGCTTTAGCATCTCTT
GAAAAAGCTGGGAGGATAGATTGTATGATTACTCAAAATGTCGACAGATT
ACATCATCGTGCAGGGAGCAATCCACTCGAATTACATGGGACTGTATATA
CTGTTGTTTGTTTAGATTGTGGTTTTTCCTTTTGTCGGGATTTGTTTCAA
GACCAGTGAAAGCCCTTAATC
back to top