FC875622

Overview
NameFC875622
Unique NameFC875622
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA5_RAT (Proteasome subunit alpha type-5 OS=Rattus norvegicus GN=Psma5 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.059e-30
Identity = 73/206 (35.44%), Postives = 120/206 (58.25%), Query Frame = 1
Query:  127 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPI---PVTQLVRETAAVMQEFTQSGGV--RPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQIS 729
            S+Y   + TFSP G+L Q+E+A+     G T++GI+ S GV +A EK++ S L++ SS+ KI  +  +IG   SG+  D + L+ K+R + + +   Y E +    VTQ V   A    E     G   RPFGV+LL  G D+KGPQL+ +DPSG++    A A+G     A++ L++ Y +   L +A+ ++++ LK+  E +++
Sbjct:    6 SEYDRGVNTFSPEGRLFQVEYAIEGHKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSTTLKEAIKSSLIILKQVMEEKLN 211          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSMA2_HALVO (Proteasome subunit alpha 2 OS=Halobacterium volcanii GN=psmA2 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.995e-30
Identity = 70/190 (36.84%), Postives = 108/190 (56.84%), Query Frame = 1
Query:  133 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTL 702
            Y    + FSP G++ Q+E+A  AV  G   LG++ ++GVV+A  +  PS L++  S+ K+  L   +G   +G   D R LV  +R  A++ H  Y EPI V  L +     +QE TQSGG RP+G SLL+ G ++   +L+  DPSG+   WKA A+G +  + +  LE  Y E++ L+D +  A+  L
Sbjct:    9 YDRGTSLFSPDGRIYQVEYAREAVKRGAPVLGVRTADGVVLAALRSTPSELMEAESIEKLHKLDDALGAATAGHVADARKLVDFARTTAQREHLRYGEPIGVETLTKTITDNIQESTQSGGTRPYGASLLIGGVENGSGRLFATDPSGTPQEWKAVAIGGHREDVQAALEDGYAEDLSLEDGLALAVEAL 198          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA6_DICDI (Proteasome subunit alpha type-6 OS=Dictyostelium discoideum GN=psmA6 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.995e-30
Identity = 71/202 (35.15%), Postives = 119/202 (58.91%), Query Frame = 1
Query:  109 LKKMGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQ-TSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDK-GPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMEL--DDAVHTAILTL 702
            + + G + Y  S+  FSP GKL QIE+A  A+ +G  TS+GI+  + VV+AT+KK+P  L+D  SV  +  LT  IG V +G+ PD +    ++ ++   +H  +   IP   L +  A + Q  TQ    RP GV++++ G DD+ GPQL++VDP+G +  +KA+A G+    +  FLEK++    +L  D+ +  +++ +
Sbjct:    1 MSRSGTAGYDMSII-FSPQGKLYQIEYAFKAIKTGGLTSVGIRGKDCVVVATQKKIPDKLIDPKSVTSLYKLTDYIGCVQTGIVPDSKSQASRAIQECATFHHKFGYQIPPNVLAKRMADIAQLSTQHASARPLGVAMILIGIDDELGPQLFKVDPAGVFTGYKATAAGEKEQESTNFLEKKFKSNPQLSKDETIQVSLIVM 201          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA5_CAEEL (Proteasome subunit alpha type-5 OS=Caenorhabditis elegans GN=pas-5 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.217e-30
Identity = 68/205 (33.17%), Postives = 122/205 (59.51%), Query Frame = 1
Query:  127 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEF----TQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQIS 729
            S+Y   + TFSP G+L Q+E+A+ AV  G TS+GIK S GV++A EK+  S L+   ++ KI  +  +IGV ++G+  D R LV +++ +A+ +   Y   I V  + +  A +  +F     ++   RPFGV++L AG D +G +L+ +DPSG++   KA ++G     A+  L+++Y + + + + +  A+  LK+  E +++
Sbjct:    6 SEYDRGVNTFSPEGRLFQVEYAIEAVKLGSTSIGIKTSEGVLLAAEKRSTSKLMVNDAIEKISKVDQHIGVTFAGLIADSRTLVERAQIEAQNFWFTYNRKIRVEDVTQSVANLALQFGDDDVKASMSRPFGVAMLFAGVDQEGAKLFHLDPSGTFIDCKAKSIGAASDGAEQNLKEQYHDALTIKEGLKMALAILKQVMEEKLN 210          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA6_SOYBN (Proteasome subunit alpha type-6 OS=Glycine max GN=PAA1 PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 8.899e-30
Identity = 73/195 (37.44%), Postives = 115/195 (58.97%), Query Frame = 1
Query:  133 YSFSLTTFSPSGKLVQIEHALTAV-GSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDK-GPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEE--MELDDAVHTAILTLK 705
            Y+  +T FSP G+L Q+E+A  AV  +G TS+G++  + + + T KK+P  L+D +SV  +  +T  +G++ +GM  D R LV+++R +A ++   Y   +PV  L +  A   Q +TQ   +RP GV  +V G DD+ GPQLY+ DP+G YF  KA++ G     A  FLEK+   +     ++ V TAI  L+
Sbjct:    9 YNRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSICVVTHKKVPDKLLDNTSVTHLFPITKYLGLLATGMTADARTLVQQARNEAAEFRFTYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLGIDDEYGPQLYKCDPAGHYFGHKATSAGLKDQEAINFLEKKMKNDPSFTYEETVQTAISALQ 203          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA6A_ARATH (Proteasome subunit alpha type-6-A OS=Arabidopsis thaliana GN=PAA1 PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.162e-29
Identity = 75/195 (38.46%), Postives = 115/195 (58.97%), Query Frame = 1
Query:  133 YSFSLTTFSPSGKLVQIEHALTAVGS-GQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDK-GPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVE--EMELDDAVHTAILTLK 705
            Y   +T FSP G+L Q+E+A  AV + G TS+G++  + V + T+KK+P  L+D+SSV  +  +T  IG+V +G+  D R LV+++R QA ++   Y   +PV  L +  A   Q +TQ   +RP GV  +V G D++ GP LY+ DP+G ++  KA++ G     A  FLEK+  E      D+ V TAI  L+
Sbjct:    9 YDRHITIFSPEGRLFQVEYAFKAVKTAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSVTHLFPITKYIGLVATGITADARSLVQQARNQAAEFRFTYGYEMPVDILAKWIADKSQVYTQHAYMRPLGVVAMVMGVDEENGPLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEKKMKENPSFTFDETVQTAISALQ 203          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA3_SPIOL (Proteasome subunit alpha type-3 OS=Spinacia oleracea GN=PAG1 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.518e-29
Identity = 66/183 (36.07%), Postives = 108/183 (59.02%), Query Frame = 1
Query:  133 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAV 681
            Y  S+TTFSP G++ QIE+A  AV +  T++GIK  +G+V+  EK + S ++   S  +I S+  + G+  +G+  D R +V +++ +A  Y  +Y E +PV +L    A+ +   T    +RPFG  +++ GYD  GPQLY V+PSG  + +  +A+GK    AKT +EK  + EM   + +
Sbjct:    8 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTAVGIKCKDGIVLGVEKLIQSKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVARAKSEATNYESVYGEAVPVKELADRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMVEPSGISYRYFGAAIGKGKQAAKTEIEKLKLSEMTCREGI 190          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA3_ORYSJ (Proteasome subunit alpha type-3 OS=Oryza sativa subsp. japonica GN=PAG1 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.518e-29
Identity = 65/183 (35.52%), Postives = 109/183 (59.56%), Query Frame = 1
Query:  133 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAV 681
            Y  S+TTFSP G++ Q+E+A  AV +  T +GIK  +G+V+  EK + S ++ E S  +I S+  + G+  +G+  D R +V +++ +A  Y ++Y EPI V +L    A+ +   T    +RPFG  +++ GYD  GPQLY ++PSG  + +  +A+GK    AKT +EK  + E+   + +
Sbjct:    8 YDLSVTTFSPDGRVFQVEYATKAVDNSGTVVGIKCKDGIVLGVEKLVTSKMMLEGSNRRIHSVHWHSGLAVAGLAADGRQIVSRAKSEAASYEKVYGEPISVKELADRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGVSYKYFGAALGKGRQAAKTEIEKLKLSELTCREGI 190          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA6_TOBAC (Proteasome subunit alpha type-6 OS=Nicotiana tabacum GN=PAA1 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.983e-29
Identity = 71/195 (36.41%), Postives = 116/195 (59.49%), Query Frame = 1
Query:  133 YSFSLTTFSPSGKLVQIEHALTAV-GSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYD-DKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEE--MELDDAVHTAILTLK 705
            Y   +T FSP G+L Q+E+A  AV  +G TS+G++  + V + T+KK+P  L+D++SV  +  +T  +G++ +GM  D R LV+++R +A ++   Y   +PV  L +  A   Q +TQ   +RP GV  ++ G D +KGPQL++ DP+G +F  KA++ G     A  FLEK+   +     ++ V TAI  L+
Sbjct:    9 YDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQTSVSHLFPITKYLGLLATGMTADARTLVQQARNEAAEFRFKYGYEMPVDVLSKWIADKSQVYTQHAYMRPLGVVAMILGIDEEKGPQLFKCDPAGHFFGHKATSAGSKEQEAINFLEKKMKNDPAFSYEETVQTAISALQ 203          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA3_DICDI (Proteasome subunit alpha type-3 OS=Dictyostelium discoideum GN=psmA3 PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.983e-29
Identity = 68/185 (36.76%), Postives = 106/185 (57.30%), Query Frame = 1
Query:  127 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAV 681
            S Y   ++T+SP GKL Q+++A  AV +  T + IKA +GVV+  EK +PS ++   S  ++  +  ++GV  +G   D R L+ ++R +A+ Y   Y +PIP+  L +  A+     T  G VRPFG S+ + G D  GPQL+ V+PSGS   +  +++GK    AK  LEK    EM   +A+
Sbjct:    6 SGYDLYVSTYSPDGKLFQVDYANKAVENSGTLVAIKAKDGVVLGVEKLVPSKMLCSGSNRRVHHIDTHVGVAIAGFLADARQLITRARSEAKNYKSTYGQPIPIKVLSQRIASYNHMHTLYGSVRPFGCSIAITGIDQYGPQLFLVEPSGSCVGYFGASLGKGKQAAKNELEKIKFSEMTCREAI 190          
The following BLAST results are available for this feature:
BLAST of FC875622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
PSA5_RAT3.059e-3035.44Proteasome subunit alpha type-5 OS=Rattus norvegic... [more]
PSMA2_HALVO3.995e-3036.84Proteasome subunit alpha 2 OS=Halobacterium volcan... [more]
PSA6_DICDI3.995e-3035.15Proteasome subunit alpha type-6 OS=Dictyostelium d... [more]
PSA5_CAEEL5.217e-3033.17Proteasome subunit alpha type-5 OS=Caenorhabditis ... [more]
PSA6_SOYBN8.899e-3037.44Proteasome subunit alpha type-6 OS=Glycine max GN=... [more]
PSA6A_ARATH1.162e-2938.46Proteasome subunit alpha type-6-A OS=Arabidopsis t... [more]
PSA3_SPIOL1.518e-2936.07Proteasome subunit alpha type-3 OS=Spinacia olerac... [more]
PSA3_ORYSJ1.518e-2935.52Proteasome subunit alpha type-3 OS=Oryza sativa su... [more]
PSA6_TOBAC1.983e-2936.41Proteasome subunit alpha type-6 OS=Nicotiana tabac... [more]
PSA3_DICDI1.983e-2936.76Proteasome subunit alpha type-3 OS=Dictyostelium d... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31401A03EF CTVClemen1 Citrus clementina cDNA clone C31401A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875622 ID=FC875622; Name=FC875622; organism=Citrus clementina; type=EST; length=740bp
GGTGTCCCCCTCTTCAGAAACCTGGCACTAGAAAAGCACTGACTTTGCGA
CTCTCTCTTTCGTAAATTACCACTCTGATTTCGATTCGATCTCCGAGGCT
TTTTTAATTTAAAAAAAATGGGTGATAGTCAGTATTCGTTCTCTTTGACC
ACTTTCAGTCCTTCTGGGAAGCTTGTTCAGATTGAACATGCCTTAACAGC
TGTTGGATCCGGCCAAACATCTCTGGGAATCAAAGCTTCTAATGGTGTTG
TCATTGCTACGGAGAAGAAACTACCGTCTATTTTGGTTGATGAATCATCT
GTTCATAAGATTCAGTCATTAACACCAAACATTGGAGTTGTATACAGTGG
GATGGGTCCCGATTTTCGGGTCCTTGTTCGAAAAAGTAGGAGGCAGGCAG
AGCAATATCACCGACTATACAAAGAGCCAATTCCTGTTACACAACTTGTA
AGAGAAACTGCTGCTGTGATGCAGGAGTTCACTCAGTCAGGTGGTGTGAG
GCCTTTTGGAGTCTCATTGCTGGTTGCAGGTTATGATGACAAAGGTCCGC
AGTTGTATCAGGTGGATCCTTCAGGTTCATATTTCTCCTGGAAAGCTTCA
GCAATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAGAAGAGGTA
TGTAGAGGAAATGGAGCTCGATGATGCTGTCCACACGGCAATATTGACAC
TAAAGGAAGGGTTTGAAGGACAGATTTCTGAAAAAACATT
back to top