FC875622

Overview
NameFC875622
Unique NameFC875622
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA5_DROME (Proteasome subunit alpha type-5 OS=Drosophila melanogaster GN=Prosalpha5 PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.192e-28
Identity = 68/208 (32.69%), Postives = 119/208 (57.21%), Query Frame = 1
Query:  127 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGG-------VRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQIS 729
            S+Y   + TFSP G+L Q+E+A+ A+  G T++GI    GVV+A EK++ S L+  S+V KI  +  +IG   SG+  D R L+ ++R + + +  +Y E + +    +  + +  +F  SG         RPFGV++L AG +   PQL+ +DPSG++    A A+G     A+  L+  +  ++ LD+A+  ++ TLK+  E +++
Sbjct:    6 SEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGICTPEGVVLAVEKRITSPLMVPSTVEKIVEVDKHIGCATSGLMADARTLIERARVECQNHWFVYNERMSIESCAQAVSTLAIQFGDSGDSDGAAAMSRPFGVAILFAGIEAGQPQLWHMDPSGTFVRHGAKAIGSGSEGAQQNLQDLFRPDLTLDEAIDISLNTLKQVMEEKLN 213          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA1_DICDI (Proteasome subunit alpha type-1 OS=Dictyostelium discoideum GN=psmA1 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.192e-28
Identity = 71/196 (36.22%), Postives = 113/196 (57.65%), Query Frame = 1
Query:  127 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRY--VEEMELDDAVHTAILTLKE 708
            +QY   +TTFSPSG++ QIE+A+ AV  G  ++ +K+    V+ + K+  S L   S   KI  +  ++G+  SG+  D R+L    R +   Y+ +Y+  + V +LV + A   Q  TQ  G RP+GV LLVAGYD  G  +YQ  PSG+++ +K+ ++G    +AKT+LEK +   EE  L+  +   +  L+E
Sbjct:    4 NQYDSDITTFSPSGRIHQIEYAMEAVKQGGAAVALKSKQFAVLVSLKRSSSEL--GSYQKKIFVVDDHVGIAISGLTADARMLCNYMRNECSNYNYVYESQMRVERLVTKVADKHQVHTQRYGRRPYGVGLLVAGYDQLGAHIYQTCPSGNFYDYKSISIGSRSQSAKTYLEKHFESFEECTLEQLITHGLRALRE 197          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA1_TRYBR (Proteasome subunit alpha type-1 OS=Trypanosoma brucei rhodesiense PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.883e-28
Identity = 74/205 (36.10%), Postives = 110/205 (53.66%), Query Frame = 1
Query:  118 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRY--VEEMELDDAVHTAILTLKEGFEGQI 726
            M  +QY    TT+SP+G+L Q+E+A  AV +G  ++G+K ++ VV+   K+ P +    S   K   L  ++G+  SG+  D R L R  R +   Y  ++    P+  L     A  Q   Q  G RPFGV LL+AGYD +GP+LYQ  PSG  F +KA+AMG     A+T+LE+ +      +LD+ V  A+  L     G +
Sbjct:    1 MFKNQYDTDTTTWSPTGRLFQVEYANEAVNNGSAAVGVKGADYVVLTALKRNP-VSGLSSYQEKAFKLDEHVGMAISGLVADGRALSRFLRTECMNYRYMHDSDAPLVMLADIVGAKHQRHIQFAGKRPFGVGLLIAGYDRQGPRLYQTVPSGDVFDFKATAMGLRSQAARTYLERHFRGFPACDLDELVMHALRALGAATSGGV 204          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA1_ORYSJ (Proteasome subunit alpha type-1 OS=Oryza sativa subsp. japonica GN=PAF1 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.883e-28
Identity = 72/201 (35.82%), Postives = 111/201 (55.22%), Query Frame = 1
Query:  127 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRY--VEEMELDDAVHTAILTLKEGFEGQ 723
            +QY   +TT+SP+G+L Q+E+A+ AV  G   +G+++    V+A   K  S L   S   K+  +  + GV  +G+  D RVL R  R +   +  +Y  P+PV++L    A   Q  TQ    RP+GV LLVAG D+ G  LY   PSG+YF ++A A+G     AKTFLE+R+    +   +  +  A+  +KE  +G+
Sbjct:    4 NQYDTDVTTWSPAGRLFQVEYAMEAVKQGSACVGLRSRTHAVLAAANKAASEL--SSHQRKVFRVADHAGVALAGLTADGRVLSRFLRSECINHAFVYDAPLPVSRLALRLADKAQVCTQRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTFLERRFEGYNDYTPEQLIKDALSAIKETLQGE 202          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA3_SCHPO (Probable proteasome subunit alpha type-3 OS=Schizosaccharomyces pombe GN=SPCC1795.04c PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.329e-28
Identity = 68/179 (37.99%), Postives = 102/179 (56.98%), Query Frame = 1
Query:  154 FSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTA 690
            FSP G+L Q E+A  AV +  T +GIK  +GV++A EK + S L+     ++I S+  +IG+  +G  PD + +V+++R +A  +   Y  PIP T +       +Q FT    VRPFGV   VA YD +GP LY V+P+G Y+ +  +A GK    A+  LEK     +++ DAV  A
Sbjct:   14 FSPDGRLFQAEYAYKAVENASTCIGIKCEDGVILALEKVVTSKLLKPRVNNRIGSVDRHIGIATTGFIPDGQHIVKRARDEATSWRDNYGSPIPGTVIADRLGNYVQLFTCYSSVRPFGVMSFVATYDSEGPHLYMVEPNGVYWGYNGAAAGKGRQVARNELEKLNFSSLKMKDAVKEA 192          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA72_DROME (Proteasome subunit alpha type-7-1A OS=Drosophila melanogaster GN=Pros28.1A PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.424e-27
Identity = 64/197 (32.49%), Postives = 113/197 (57.36%), Query Frame = 1
Query:  127 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYD-DKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYV--EEMELDDAVHTAILTLKE 708
            S+Y  +LT FSP G L+Q+E+A  AV  G T++G++ +N VV+  EK   S + ++ +V KI  L  ++ + ++G+  D R+L+ + + + + +   ++  + +  + R  A + Q++TQ  G RPFG+S L+ G D D   +L+  +PSG +  +KA+A G+  +  + F EK Y   E     DA+  A+  L E
Sbjct:    3 SRYGRALTIFSPDGHLLQVEYAQEAVRKGSTAVGVRGANCVVLGVEKSSVSEMQEDRTVRKISMLDRHVALAFAGLTADARILINRGQVECQSHRLNFENQVTLEYITRYLAQLKQKYTQCNGRRPFGISCLIGGIDADGSARLFHTEPSGIFHEYKATATGRWANTVREFFEKAYSDHEVTTKCDAIKLAMRALLE 199          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA3_ACACA (Proteasome subunit alpha type-3 (Fragment) OS=Acanthamoeba castellanii PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.424e-27
Identity = 67/186 (36.02%), Postives = 105/186 (56.45%), Query Frame = 1
Query:  133 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTA 690
            Y  S TTFSP G++ Q+E+A  AV +  T+LG++  +GVV+A EK L S ++  ++  +I ++  + G+  SG+  D R LV + R +A  Y   Y   I    L    +  +Q ++  G VRPFG S+++   D  GPQLY ++PSG  + +   A+GK    AKT +EK  + EM   +A+  A
Sbjct:    6 YDLSSTTFSPDGRVFQVEYAAKAVDNSGTALGLRVKDGVVLAVEKLLVSKMLVPNTNRRIHTVDRHCGLAMSGLVADGRQLVSRGRAEATSYREFYGTDISGKVLNERLSNFVQLYSLYGSVRPFGTSVILGCVDKNGPQLYMIEPSGISWGYFGVAIGKGARAAKTEIEKLKLSEMTAREAIKEA 191          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA1_MOUSE (Proteasome subunit alpha type-1 OS=Mus musculus GN=Psma1 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.165e-27
Identity = 69/196 (35.20%), Postives = 111/196 (56.63%), Query Frame = 1
Query:  127 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEME--LDDAVHTAILTLKE 708
            +QY   +T +SP G++ QIE+A+ AV  G  ++G+K+    V+   K+  S L       KI  +  +IG+  +G+  D R+L    R++      ++  P+PV++LV    +  Q  TQ  G RP+GV LL+AGYDD GP ++Q  PS +YF  +A ++G    +A+T+LE+   E ME  LD+ V   +  L+E
Sbjct:    4 NQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQK--KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLDELVKHGLRALRE 197          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA6_ORYSJ (Proteasome subunit alpha type-6 OS=Oryza sativa subsp. japonica GN=PAA1 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.134e-27
Identity = 70/195 (35.90%), Postives = 114/195 (58.46%), Query Frame = 1
Query:  133 YSFSLTTFSPSGKLVQIEHALTAVGS-GQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYD-DKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMEL--DDAVHTAILTLK 705
            Y   +T FSP G+L Q+E+A  AV S G TS+G++  + V + T+KK+P  L+D +SV  +  +T  IG++ +G+  D R LV ++R +A ++   +   +PV  L +  A   Q +TQ   +RP GV  +V GYD +K  QL++ DP+G +F  KA++ G     A  FLEK+  ++ +   ++ V  AI  L+
Sbjct:    9 YDRHITIFSPEGRLYQVEYAFKAVKSAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYIGLLATGLTADARSLVYQARNEAAEFRFKWGYEMPVDVLAKWIADKAQVYTQHAYMRPLGVVAMVLGYDEEKNAQLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKDDPQFSYEETVQIAISALQ 203          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA5_YEAST (Proteasome component PUP2 OS=Saccharomyces cerevisiae GN=PUP2 PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 4.134e-27
Identity = 68/209 (32.54%), Postives = 112/209 (53.59%), Query Frame = 1
Query:  127 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGG------VRPFGVSLLVAGYD-DKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISE 732
            S+Y   ++TFSP G+L Q+E++L A+  G T++GI    GVV+  EK+  S L++  S+ KI  +  +IG   SG+  D R ++  +R  A  ++  Y E I V  L +    +   F +          RPFGV+LL+AG+D D G QL+  +PSG+++ + A A+G     A+  L   +   + L +A    +  LK+  E ++ E
Sbjct:    6 SEYDRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVMEEKLDE 214          
The following BLAST results are available for this feature:
BLAST of FC875622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
PSA5_DROME2.192e-2832.69Proteasome subunit alpha type-5 OS=Drosophila mela... [more]
PSA1_DICDI2.192e-2836.22Proteasome subunit alpha type-1 OS=Dictyostelium d... [more]
PSA1_TRYBR4.883e-2836.10Proteasome subunit alpha type-1 OS=Trypanosoma bru... [more]
PSA1_ORYSJ4.883e-2835.82Proteasome subunit alpha type-1 OS=Oryza sativa su... [more]
PSA3_SCHPO8.329e-2837.99Probable proteasome subunit alpha type-3 OS=Schizo... [more]
PSA72_DROME2.424e-2732.49Proteasome subunit alpha type-7-1A OS=Drosophila m... [more]
PSA3_ACACA2.424e-2736.02Proteasome subunit alpha type-3 (Fragment) OS=Acan... [more]
PSA1_MOUSE3.165e-2735.20Proteasome subunit alpha type-1 OS=Mus musculus GN... [more]
PSA6_ORYSJ4.134e-2735.90Proteasome subunit alpha type-6 OS=Oryza sativa su... [more]
PSA5_YEAST4.134e-2732.54Proteasome component PUP2 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionC31401A03EF CTVClemen1 Citrus clementina cDNA clone C31401A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875622 ID=FC875622; Name=FC875622; organism=Citrus clementina; type=EST; length=740bp
GGTGTCCCCCTCTTCAGAAACCTGGCACTAGAAAAGCACTGACTTTGCGA
CTCTCTCTTTCGTAAATTACCACTCTGATTTCGATTCGATCTCCGAGGCT
TTTTTAATTTAAAAAAAATGGGTGATAGTCAGTATTCGTTCTCTTTGACC
ACTTTCAGTCCTTCTGGGAAGCTTGTTCAGATTGAACATGCCTTAACAGC
TGTTGGATCCGGCCAAACATCTCTGGGAATCAAAGCTTCTAATGGTGTTG
TCATTGCTACGGAGAAGAAACTACCGTCTATTTTGGTTGATGAATCATCT
GTTCATAAGATTCAGTCATTAACACCAAACATTGGAGTTGTATACAGTGG
GATGGGTCCCGATTTTCGGGTCCTTGTTCGAAAAAGTAGGAGGCAGGCAG
AGCAATATCACCGACTATACAAAGAGCCAATTCCTGTTACACAACTTGTA
AGAGAAACTGCTGCTGTGATGCAGGAGTTCACTCAGTCAGGTGGTGTGAG
GCCTTTTGGAGTCTCATTGCTGGTTGCAGGTTATGATGACAAAGGTCCGC
AGTTGTATCAGGTGGATCCTTCAGGTTCATATTTCTCCTGGAAAGCTTCA
GCAATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAGAAGAGGTA
TGTAGAGGAAATGGAGCTCGATGATGCTGTCCACACGGCAATATTGACAC
TAAAGGAAGGGTTTGAAGGACAGATTTCTGAAAAAACATT
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