FC875622

Overview
NameFC875622
Unique NameFC875622
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSMA_THEON (Proteasome subunit alpha OS=Thermococcus onnurineus (strain NA1) GN=psmA PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.258e-40
Identity = 83/195 (42.56%), Postives = 125/195 (64.10%), Query Frame = 1
Query:  133 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFE 717
            Y  ++T FSP G+L Q+ +A  AV  G T++G+K   GVV+A EK++ S L++ SS  KI  +  +I    SG+  D RVLV ++R +A+ Y   Y EP+P+T LV++   + Q  TQ GGVRPFG +LL+AG +DK P+LY+ DPSG+YF W+A A+G   + A    E  Y ++++++ A+  AIL L +  E
Sbjct:   10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKWKEGVVLAVEKRITSKLIEPSSYEKIFQIDDHIAAAPSGIIADARVLVDRARLEAQVYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVNDK-PELYETDPSGAYFEWRAVAIGSGRNTAMAIFEDHYSDDLDMEGAIKLAILALAKTLE 203          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSMA_THEGJ (Proteasome subunit alpha OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=psmA PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.561e-40
Identity = 83/195 (42.56%), Postives = 126/195 (64.62%), Query Frame = 1
Query:  133 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFE 717
            Y  ++T FSP G+L Q+ +A  AV  G T++G+K   GVV+A EK++ S L++ SS  KI  +  +I    SG+  D RVLV ++R +A+ Y   Y EP+P+T LV++   + Q  TQ GGVRPFG +LL+AG ++K P+LY+ DPSG+YF WKA A+G   + A    E+ Y ++++++ A+  AIL L +  E
Sbjct:   10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKWKGGVVLAVEKRITSRLIEPSSYEKIFQIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVNEK-PELYETDPSGAYFEWKAVAIGSGRNTAMAIFEEHYSDDIDMEGAIKLAILALAKTLE 203          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSMA_THEK1 (Proteasome subunit alpha OS=Thermococcus sp. (strain KS-1) GN=psmA PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 7.263e-40
Identity = 85/200 (42.50%), Postives = 128/200 (64.00%), Query Frame = 1
Query:  133 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISE 732
            Y  ++T FSP G+L Q+ +A  AV  G T++G+K  +GVV+A EK++ S L++ SS  KI  +  +I    SG+  D RVLV ++R +A+ Y   Y EP+P+T LV++   + Q  TQ GGVRPFG +LL+AG ++K P+L++ DPSG+YF WKA A+G   + A    E+ Y +++  DDA+  AIL L +  E   +E
Sbjct:   10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKWKDGVVLAVEKRITSKLIEPSSYEKIFLIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVNEK-PELFETDPSGAYFEWKAVAIGSGRNTAMAIFEEHYRDDIGKDDAIKLAILALAKTLEEPTAE 208          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSMA_PYRKO (Proteasome subunit alpha OS=Pyrococcus kodakaraensis GN=psmA PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 7.263e-40
Identity = 85/200 (42.50%), Postives = 128/200 (64.00%), Query Frame = 1
Query:  133 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISE 732
            Y  ++T FSP G+L Q+ +A  AV  G T++G+K  +GVV+A EK++ S L++ SS  KI  +  +I    SG+  D RVLV ++R +A+ Y   Y EP+P+T LV++   + Q  TQ GGVRPFG +LL+AG ++K P+L++ DPSG+YF WKA A+G   + A    E+ Y +++  DDA+  AIL L +  E   +E
Sbjct:   10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKWKDGVVLAVEKRITSKLIEPSSYEKIFLIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVNEK-PELFETDPSGAYFEWKAVAIGSGRNTAMAIFEEHYRDDIGKDDAIKLAILALAKTLEEPTAE 208          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSMA_PYRAB (Proteasome subunit alpha OS=Pyrococcus abyssi GN=psmA PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.239e-39
Identity = 83/200 (41.50%), Postives = 126/200 (63.00%), Query Frame = 1
Query:  133 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISE 732
            Y  ++T FSP G+L Q+ +A  AV  G T++G+K  +GVV+A EK++ S L++  S  KI  +  +I    SG+  D RVLV ++R +A+ +   Y EP P+  +V++   + Q  TQ GGVRPFG +LL+AG +DK P+LY+ DPSG+YF+WKA A+G   + A    E +Y ++M LD+A+  AI  L +  E   +E
Sbjct:   10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKCKDGVVLAVEKRITSRLIEPESYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIHRLTYGEPAPLAVIVKKICDLKQMHTQYGGVRPFGAALLMAGVNDK-PELYETDPSGAYFAWKAVAIGSGRNTAMAIFEDKYRDDMTLDEAIKLAIFALAKTMEKPSAE 208          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA5_TRYBB (Proteasome subunit alpha type-5 OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.113e-39
Identity = 85/207 (41.06%), Postives = 129/207 (62.32%), Query Frame = 1
Query:  127 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGG-----VRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISE 732
            ++Y   + TFSP G++ QIE+A+ A+  G TSLGI+  + V+IA EK++PS LVD SSV+KI  +  +IG V SGM  D R+LV  +R +A+ +   Y EP+ V      T  +  +F +SGG      RPFGVSLL+AG D+ GPQL+Q DPSG+Y  + A A+G     A+T   +RY   M +++A +  +  L++  E ++++
Sbjct:    6 TEYDRGVNTFSPEGRIFQIEYAIEAIKLGSTSLGIQTPDAVIIAAEKRVPSTLVDPSSVNKILEIDHHIGTVLSGMVADARILVDHARVEAQNHRFTYDEPMSVESCALATCDLSVQFGESGGRKKLMSRPFGVSLLIAGVDENGPQLWQTDPSGTYTRYDAQAIGGGAEAAQTVFSERYHRNMTVEEAENLTVQILRQVMEEKLTK 212          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSMA_PYRHO (Proteasome subunit alpha OS=Pyrococcus horikoshii GN=psmA PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.605e-39
Identity = 81/200 (40.50%), Postives = 127/200 (63.50%), Query Frame = 1
Query:  133 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISE 732
            Y  ++T FSP G+L Q+ +A  AV  G T++G+K + GVV+A EK++ S L++  S  KI  +  +I    SG+  D RVLV ++R +A+ +   Y EP P+  +V++   + Q  TQ GGVRPFG +LL+AG ++K P+LY+ DPSG+YF+WKA A+G   + A    E++Y ++M L++A+  AI  L +  E   +E
Sbjct:   10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKCNEGVVLAVEKRITSRLIEPESYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIHRLTYGEPAPLAVIVKKICDLKQMHTQYGGVRPFGAALLMAGVNEK-PELYETDPSGAYFAWKAVAIGSGRNTAMAIFEEKYKDDMSLEEAIKLAIFALAKTMEKPSAE 208          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSMA_SULIY (Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.336e-38
Identity = 77/190 (40.53%), Postives = 120/190 (63.16%), Query Frame = 1
Query:  133 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTL 702
            Y  ++T FSP G L Q+++A  AV  G T++GIK+ +GVVIA+EK+    L+D  S+ K+  +  ++G  ++G+  D RVL+  +R  A Q+  +Y EP+ +  L +  A V Q +TQ GGVRPFGV+L++AG D   P+LY  +PSG Y  ++A A+G+    A  FLEK Y E++ ++D +  A+  L
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKAL 199          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSMA_SULIN (Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=psmA PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.336e-38
Identity = 77/190 (40.53%), Postives = 120/190 (63.16%), Query Frame = 1
Query:  133 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTL 702
            Y  ++T FSP G L Q+++A  AV  G T++GIK+ +GVVIA+EK+    L+D  S+ K+  +  ++G  ++G+  D RVL+  +R  A Q+  +Y EP+ +  L +  A V Q +TQ GGVRPFGV+L++AG D   P+LY  +PSG Y  ++A A+G+    A  FLEK Y E++ ++D +  A+  L
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKAL 199          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSMA_SULIM (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.336e-38
Identity = 77/190 (40.53%), Postives = 120/190 (63.16%), Query Frame = 1
Query:  133 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTL 702
            Y  ++T FSP G L Q+++A  AV  G T++GIK+ +GVVIA+EK+    L+D  S+ K+  +  ++G  ++G+  D RVL+  +R  A Q+  +Y EP+ +  L +  A V Q +TQ GGVRPFGV+L++AG D   P+LY  +PSG Y  ++A A+G+    A  FLEK Y E++ ++D +  A+  L
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKAL 199          
The following BLAST results are available for this feature:
BLAST of FC875622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
PSMA_THEON4.258e-4042.56Proteasome subunit alpha OS=Thermococcus onnurineu... [more]
PSMA_THEGJ5.561e-4042.56Proteasome subunit alpha OS=Thermococcus gammatole... [more]
PSMA_THEK17.263e-4042.50Proteasome subunit alpha OS=Thermococcus sp. (stra... [more]
PSMA_PYRKO7.263e-4042.50Proteasome subunit alpha OS=Pyrococcus kodakaraens... [more]
PSMA_PYRAB1.239e-3941.50Proteasome subunit alpha OS=Pyrococcus abyssi GN=p... [more]
PSA5_TRYBB2.113e-3941.06Proteasome subunit alpha type-5 OS=Trypanosoma bru... [more]
PSMA_PYRHO3.605e-3940.50Proteasome subunit alpha OS=Pyrococcus horikoshii ... [more]
PSMA_SULIY2.336e-3840.53Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIN2.336e-3840.53Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIM2.336e-3840.53Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]

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Properties
Property NameValue
Genbank descriptionC31401A03EF CTVClemen1 Citrus clementina cDNA clone C31401A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875622 ID=FC875622; Name=FC875622; organism=Citrus clementina; type=EST; length=740bp
GGTGTCCCCCTCTTCAGAAACCTGGCACTAGAAAAGCACTGACTTTGCGA
CTCTCTCTTTCGTAAATTACCACTCTGATTTCGATTCGATCTCCGAGGCT
TTTTTAATTTAAAAAAAATGGGTGATAGTCAGTATTCGTTCTCTTTGACC
ACTTTCAGTCCTTCTGGGAAGCTTGTTCAGATTGAACATGCCTTAACAGC
TGTTGGATCCGGCCAAACATCTCTGGGAATCAAAGCTTCTAATGGTGTTG
TCATTGCTACGGAGAAGAAACTACCGTCTATTTTGGTTGATGAATCATCT
GTTCATAAGATTCAGTCATTAACACCAAACATTGGAGTTGTATACAGTGG
GATGGGTCCCGATTTTCGGGTCCTTGTTCGAAAAAGTAGGAGGCAGGCAG
AGCAATATCACCGACTATACAAAGAGCCAATTCCTGTTACACAACTTGTA
AGAGAAACTGCTGCTGTGATGCAGGAGTTCACTCAGTCAGGTGGTGTGAG
GCCTTTTGGAGTCTCATTGCTGGTTGCAGGTTATGATGACAAAGGTCCGC
AGTTGTATCAGGTGGATCCTTCAGGTTCATATTTCTCCTGGAAAGCTTCA
GCAATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAGAAGAGGTA
TGTAGAGGAAATGGAGCTCGATGATGCTGTCCACACGGCAATATTGACAC
TAAAGGAAGGGTTTGAAGGACAGATTTCTGAAAAAACATT
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