FC875622

Overview
NameFC875622
Unique NameFC875622
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA7_MOUSE (Proteasome subunit alpha type-7 OS=Mus musculus GN=Psma7 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.374e-37
Identity = 76/192 (39.58%), Postives = 122/192 (63.54%), Query Frame = 1
Query:  133 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYD-DKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLK 705
            Y  ++T FSP G L Q+E+A  AV  G T++G++  + VV+  EKK  + L DE +V KI +L  N+ + ++G+  D R+++ ++R + + +    ++P+ V  + R  A++ Q +TQS G RPFG+S L+ G+D D  P+LYQ DPSG+Y +WKA+A+G+   + + FLEK Y      DDA+ T  LT+K
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYT-----DDAIETDDLTIK 189          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSMA_HALWD (Proteasome subunit alpha OS=Haloquadratum walsbyi (strain DSM 16790) GN=psmA PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.516e-37
Identity = 75/190 (39.47%), Postives = 119/190 (62.63%), Query Frame = 1
Query:  133 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTL 702
            Y   +T FSP G+L Q+E+A  AV  G  S+GI+  +G+V+A +K+  S L++ +SV KI     ++G+  +G   D R L+  +RRQA+     Y EP+ +  L +     +Q++TQ GG RPFGV+LL+ G +D  P+LY+ DPSG+ + WKA ++G + S+ +  LE+ Y EE+ LD+ V  A+ T+
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASVGIRTPDGIVLAADKRSRSPLMEPTSVEKIHKTDDHVGIASAGHVADARQLIDFARRQAQVNRLRYGEPVGIETLTKNVTDNIQQYTQVGGARPFGVALLIGGIEDGSPRLYETDPSGTPYEWKAVSIGADRSDLQEHLEENYTEELSLDEGVGLALRTI 199          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA7B_ARATH (Proteasome subunit alpha type-7-B OS=Arabidopsis thaliana GN=PAD2 PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 7.516e-37
Identity = 80/199 (40.20%), Postives = 124/199 (62.31%), Query Frame = 1
Query:  127 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYD--DKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFE 717
            ++Y  ++T FSP G L Q+E+AL AV  G  ++G++ ++ VV+A EKK    L D  S  KI SL  +I +  +G+  D RVL+ K+R + + +    ++P+ V  + R  A + Q++TQSGGVRPFG+S L+ G+D   + P LYQ DPSG++ +WKA+A G+N ++ + FLEK Y +E    + +  AI  L E  E
Sbjct:    2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLAVEKKSTPKLQDSRSARKIVSLDNHIALACAGLKADARVLINKARIECQSHRLTLEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYSRLPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNY-KESSGQETIKLAIRALLEVVE 199          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSMA_SULSO (Proteasome subunit alpha OS=Sulfolobus solfataricus GN=psmA PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.817e-37
Identity = 74/190 (38.95%), Postives = 119/190 (62.63%), Query Frame = 1
Query:  133 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTL 702
            Y  ++T FSP G L Q+++A  AV  G T++GIK+ + VVIA+EK+    L+D  S+ K+  +  ++G  ++G+  D RVL+  +R  A Q+  +Y EP+ +  L +  A V Q +TQ GGVRPFGV+L++AG D   P+L+  +PSG Y  ++A A+G+    A  FLEK Y E++ +++ +  A+  L
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSSVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVPKLFMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLNVEETILLALKAL 199          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA7_BOVIN (Proteasome subunit alpha type-7 OS=Bos taurus GN=PSMA7 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.817e-37
Identity = 75/192 (39.06%), Postives = 122/192 (63.54%), Query Frame = 1
Query:  133 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYD-DKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLK 705
            Y  ++T FSP G L Q+E+A  AV  G T++G++  + VV+  EKK  + L DE +V KI +L  N+ + ++G+  D R+++ ++R + + +    ++P+ V  + R  A++ Q +TQS G RPFG+S L+ G+D D  P+LYQ DPSG+Y +WKA+A+G+   + + FLEK Y      D+A+ T  LT+K
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYT-----DEAIETDDLTIK 189          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA7_HUMAN (Proteasome subunit alpha type-7 OS=Homo sapiens GN=PSMA7 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.282e-36
Identity = 75/192 (39.06%), Postives = 122/192 (63.54%), Query Frame = 1
Query:  133 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYD-DKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLK 705
            Y  ++T FSP G L Q+E+A  AV  G T++G++  + VV+  EKK  + L DE +V KI +L  N+ + ++G+  D R+++ ++R + + +    ++P+ V  + R  A++ Q +TQS G RPFG+S L+ G+D D  P+LYQ DPSG+Y +WKA+A+G+   + + FLEK Y      D+A+ T  LT+K
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYT-----DEAIETDDLTIK 189          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA7B_XENLA (Proteasome subunit alpha type-7-B OS=Xenopus laevis GN=psma7-B PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.282e-36
Identity = 75/192 (39.06%), Postives = 121/192 (63.02%), Query Frame = 1
Query:  133 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYD-DKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLK 705
            Y  ++T FSP G L Q+E+A  AV  G T++G++    VV+  EKK  + L DE +V KI +L  N+ + ++G+  D R+++ ++R + + +    ++P+ V  + R  A++ Q +TQS G RPFG+S L+ G+D D  P+LYQ DPSG+Y +WKA+A+G+   + + FLEK Y      D+A+ T  LT+K
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKEIVVLGVEKKSVAKLQDERTVRKICALDENVFMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKHYT-----DEAIETDDLTIK 189          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA7A_XENLA (Proteasome subunit alpha type-7-A OS=Xenopus laevis GN=psma7-A PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.282e-36
Identity = 75/192 (39.06%), Postives = 121/192 (63.02%), Query Frame = 1
Query:  133 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYD-DKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLK 705
            Y  ++T FSP G L Q+E+A  AV  G T++G++    VV+  EKK  + L DE +V KI +L  N+ + ++G+  D R+++ ++R + + +    ++P+ V  + R  A++ Q +TQS G RPFG+S L+ G+D D  P+LYQ DPSG+Y +WKA+A+G+   + + FLEK Y      D+A+ T  LT+K
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKEIVVLGVEKKSVAKLQDERTVRKICALDENVFMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKHYT-----DEAIETDDLTIK 189          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA7A_ARATH (Proteasome subunit alpha type-7-A OS=Arabidopsis thaliana GN=PAD1 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.282e-36
Identity = 81/199 (40.70%), Postives = 124/199 (62.31%), Query Frame = 1
Query:  127 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYD--DKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFE 717
            ++Y  ++T FSP G L Q+E+AL AV  G  ++G++ ++ VV+A EKK    L D  S  KI SL  +I +  +G+  D RVL+ K+R + + +    ++P+ V  + R  A + Q++TQSGGVRPFG+S L+ G+D   + P LYQ DPSG++ +WKA+A G+N ++ + FLEK Y +E    + V  AI  L E  E
Sbjct:    2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLAVEKKSTPKLQDSRSARKIVSLDNHIALACAGLKADARVLINKARIECQSHRLTLEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTRIPALYQTDPSGTFSAWKANATGRNSNSIREFLEKNY-KESAGQETVKLAIRALLEVVE 199          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA7_SOLLC (Proteasome subunit alpha type-7 OS=Solanum lycopersicum GN=PAD1 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.187e-36
Identity = 80/199 (40.20%), Postives = 123/199 (61.81%), Query Frame = 1
Query:  127 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKG--PQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFE 717
            ++Y  ++T FSP G L Q+E+A+ AV  G  ++G++ ++ VV+  EKK    L D  SV KI +L  +I +  +G+  D RVLV K+R + + +    ++P+ V  + R  A + Q++TQSGGVRPFG+S L+ G+D     P LYQ DPSG++ +WKA+A G+N ++ + FLEK Y +E    + V  AI  L E  E
Sbjct:    2 ARYDRAITVFSPDGHLFQVEYAMEAVRKGNAAVGVRGTDTVVLGVEKKSTPKLQDSRSVRKIVNLDDHIALACAGLKADARVLVNKARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIIGFDPHTGVPSLYQTDPSGTFSAWKANATGRNSNSTREFLEKNY-KETSGQETVKLAIRALLEVVE 199          
The following BLAST results are available for this feature:
BLAST of FC875622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
PSA7_MOUSE3.374e-3739.58Proteasome subunit alpha type-7 OS=Mus musculus GN... [more]
PSMA_HALWD7.516e-3739.47Proteasome subunit alpha OS=Haloquadratum walsbyi ... [more]
PSA7B_ARATH7.516e-3740.20Proteasome subunit alpha type-7-B OS=Arabidopsis t... [more]
PSMA_SULSO9.817e-3738.95Proteasome subunit alpha OS=Sulfolobus solfataricu... [more]
PSA7_BOVIN9.817e-3739.06Proteasome subunit alpha type-7 OS=Bos taurus GN=P... [more]
PSA7_HUMAN1.282e-3639.06Proteasome subunit alpha type-7 OS=Homo sapiens GN... [more]
PSA7B_XENLA1.282e-3639.06Proteasome subunit alpha type-7-B OS=Xenopus laevi... [more]
PSA7A_XENLA1.282e-3639.06Proteasome subunit alpha type-7-A OS=Xenopus laevi... [more]
PSA7A_ARATH1.282e-3640.70Proteasome subunit alpha type-7-A OS=Arabidopsis t... [more]
PSA7_SOLLC2.187e-3640.20Proteasome subunit alpha type-7 OS=Solanum lycoper... [more]

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Properties
Property NameValue
Genbank descriptionC31401A03EF CTVClemen1 Citrus clementina cDNA clone C31401A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875622 ID=FC875622; Name=FC875622; organism=Citrus clementina; type=EST; length=740bp
GGTGTCCCCCTCTTCAGAAACCTGGCACTAGAAAAGCACTGACTTTGCGA
CTCTCTCTTTCGTAAATTACCACTCTGATTTCGATTCGATCTCCGAGGCT
TTTTTAATTTAAAAAAAATGGGTGATAGTCAGTATTCGTTCTCTTTGACC
ACTTTCAGTCCTTCTGGGAAGCTTGTTCAGATTGAACATGCCTTAACAGC
TGTTGGATCCGGCCAAACATCTCTGGGAATCAAAGCTTCTAATGGTGTTG
TCATTGCTACGGAGAAGAAACTACCGTCTATTTTGGTTGATGAATCATCT
GTTCATAAGATTCAGTCATTAACACCAAACATTGGAGTTGTATACAGTGG
GATGGGTCCCGATTTTCGGGTCCTTGTTCGAAAAAGTAGGAGGCAGGCAG
AGCAATATCACCGACTATACAAAGAGCCAATTCCTGTTACACAACTTGTA
AGAGAAACTGCTGCTGTGATGCAGGAGTTCACTCAGTCAGGTGGTGTGAG
GCCTTTTGGAGTCTCATTGCTGGTTGCAGGTTATGATGACAAAGGTCCGC
AGTTGTATCAGGTGGATCCTTCAGGTTCATATTTCTCCTGGAAAGCTTCA
GCAATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAGAAGAGGTA
TGTAGAGGAAATGGAGCTCGATGATGCTGTCCACACGGCAATATTGACAC
TAAAGGAAGGGTTTGAAGGACAGATTTCTGAAAAAACATT
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