FC875622

Overview
NameFC875622
Unique NameFC875622
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA4_SCHPO (Probable proteasome subunit alpha type-4 OS=Schizosaccharomyces pombe GN=SPAC13C5.01c PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.047e-34
Identity = 75/194 (38.66%), Postives = 122/194 (62.89%), Query Frame = 1
Query:  133 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVD-ESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKE 708
            Y    T FSP G+L Q+E+AL A+     +LGI A +G+V+A EKK+ S L++ E S  K+  +  N+    +G+  D  +L+  +RR  +QY + + E +P  QLVR    + Q +TQ GG+RPFGVS L AG+D  +G QL+Q +PSG+Y SW+A+++G N ++ ++ + + Y +++ LD+A   A+  L +
Sbjct:    5 YDSRTTIFSPEGRLYQVEYALEAINHAGVALGIVAKDGIVLAAEKKVTSKLLEQEESAEKLYHIGDNMLCAVAGLTADANILINYARRVGQQYLQTFNEEMPCEQLVRRVCDLKQGYTQYGGLRPFGVSFLYAGWDHIRGYQLFQSNPSGNYGSWQANSIGGNSTSVQSLMRQEYKDDINLDEASAMAVKFLSK 198          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSMA_PYRAE (Proteasome subunit alpha OS=Pyrobaculum aerophilum GN=psmA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.673e-34
Identity = 77/195 (39.49%), Postives = 112/195 (57.44%), Query Frame = 1
Query:  133 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFE 717
            Y  ++T FSP GK+ Q+E+A  AV  G  ++G+K   GVV+  EK+  S L D SS+ KI  +  ++    SG+  D R+L+  +R  A  +  +Y EPI V  L +    + Q++TQ GG RPFGV+LL+AG D  G +LYQ DPSG Y  + A+A+G        FLEK Y  +ME+ + +  A+  L    E
Sbjct:    9 YDRAITIFSPEGKIYQVEYAGEAVKRGWPTVGVKCKAGVVLTAEKRKISALFDSSSLEKIYLIDEHVAASPSGLLADARILIDYARDVALSHRFIYDEPIDVEFLTKAVCNLKQQYTQFGGARPFGVALLIAGVDRHGARLYQTDPSGVYIGYFATAIGAESGTITEFLEKNYKFDMEMGECIELALKALASAVE 203          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA7_CHICK (Proteasome subunit alpha type-7 OS=Gallus gallus GN=PSMA7 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.491e-34
Identity = 72/192 (37.50%), Postives = 119/192 (61.98%), Query Frame = 1
Query:  133 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYD-DKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLK 705
            Y  ++T FSP G L Q+E+A  AV  G T++G++  + VV+  EKK  + L DE +V KI +L  N+ + ++G+  D R+++ ++R + + +    ++P+ V  + R  A++ Q +TQS   RPFG+S L+ G+D D  P+LYQ DPSG+Y +WKA+A+G+   + +   EK Y      D+A+ T  LT+K
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSKRRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVRVEFEKNYT-----DEAIETDDLTIK 189          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA5A_ARATH (Proteasome subunit alpha type-5-A OS=Arabidopsis thaliana GN=PAE1 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.491e-34
Identity = 75/204 (36.76%), Postives = 123/204 (60.29%), Query Frame = 1
Query:  127 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPV---TQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQIS 729
            ++Y   + TFSP G+L Q+E+A+ A+  G T++G+K   GVV+A EK++ S L++ SSV KI  +  +IG   SG+  D R LV  +R + + +   Y EP+ V   TQ + + A    E  +    RPFGVSLL+AG+D+ GP LY  DPSG+++   A A+G     A + L++++ +++ L +A   A+  LK+  E +++
Sbjct:    6 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGEEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQFNKDLSLQEAETIAVSILKQVMEEKVT 209          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSMA_SULAC (Proteasome subunit alpha OS=Sulfolobus acidocaldarius GN=psmA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.560e-34
Identity = 76/198 (38.38%), Postives = 118/198 (59.60%), Query Frame = 1
Query:  133 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYD-DKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDD----AVHTAILTLKEG 711
            Y  ++T FSP G L Q+++A  AV  G T+LG+K  +GVV+  EK+  + L+D   + KI  L  ++G  ++G+  D R+L+  +R QA Q+  +Y EPI +  L +  + V Q +TQ GGVRPFGV+L+V G D  K P+L   +PSG +  + A A+G+    A  +LEK Y E++++      A+   + TLK G
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKRGWTTLGVKTKSGVVLLAEKRKATQLLDVDGIEKIFMLDDHVGCTFAGLASDGRILIDYARSQALQHRLIYDEPISIEYLTKVISDVKQAYTQHGGVRPFGVALIVGGIDKGKQPKLLMTEPSGQFMPYYAVAIGQGGYTATEYLEKNYKEDLDIQSTILLALRALMATLKPG 207          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA7_YEAST (Proteasome component PRE6 OS=Saccharomyces cerevisiae GN=PRE6 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.560e-34
Identity = 77/181 (42.54%), Postives = 110/181 (60.77%), Query Frame = 1
Query:  127 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEK----KLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYD--DKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRY 651
            S Y  +L+ FSP G + Q+E+AL AV  G  ++G+K  N VV+  E+    KL    +  S V KI S   ++ + +SG+  D R+L+ K+R +A+ +    ++P+ V  L R  A V Q +TQSGGVRPFGVS L+AG+D  D  P+LYQ +PSG Y SW A  +G+N    + FLEK Y
Sbjct:    2 SGYDRALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDS---HVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNY 179          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSMA_METTE (Proteasome subunit alpha OS=Methanosarcina thermophila GN=psmA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.955e-34
Identity = 77/202 (38.12%), Postives = 121/202 (59.90%), Query Frame = 1
Query:  133 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISEKT 738
            Y  ++T FSP G+L Q+E+A  AV  G T++GIKA++GVV+  +K++ S LV+  S+ KI  +  +IG   SG+  D R LV ++R +A+     Y E I V  + ++     Q +TQ GGVRP+G +LL+AG DDK P+L++ DPSG+   +KA+A+G   +      E  Y E+M ++ A+   +  L +  EG+    T
Sbjct:    7 YDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDDHIGAATSGLVADARALVDRARVEAQVNRVSYDELIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVDDKRPRLFETDPSGALLEYKATAIGAGRNAVVEVFEADYKEDMNIEAAILLGMDALYKAAEGKFDAGT 208          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSMA_METM5 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=psmA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.955e-34
Identity = 74/197 (37.56%), Postives = 119/197 (60.41%), Query Frame = 1
Query:  127 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFE 717
            S Y  ++T FSP G+L Q+E+A  AV  G T++GIK  +GVV+A ++++ S L+D SS+ KI  +  +I    SG+  D RVL+ ++R +A+     Y E I V  L ++   + Q +TQ GG RPFG++LL+ G D    +L++ DPSG+   +KA+A+G     A   LE +Y E+M +++ +  A+  L +  E
Sbjct:    8 SGYDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRHSARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYSEDMTVNEGMELALYALSKTTE 204          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA5B_ARATH (Proteasome subunit alpha type-5-B OS=Arabidopsis thaliana GN=PAE2 PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 5.955e-34
Identity = 75/204 (36.76%), Postives = 123/204 (60.29%), Query Frame = 1
Query:  127 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPV---TQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQIS 729
            ++Y   + TFSP G+L Q+E+A+ A+  G T++G+K   GVV+A EK++ S L++ SSV KI  +  +IG   SG+  D R LV  +R + + +   Y EP+ V   TQ + + A    E  +    RPFGVSLL+AG+D+ GP LY  DPSG+++   A A+G     A + L++++ +++ L +A   A+  LK+  E +++
Sbjct:    6 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGEEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQFNKDITLQEAETIAVSILKQVMEEKVT 209          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA4_PETHY (Proteasome subunit alpha type-4 OS=Petunia hybrida GN=PAC1 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.778e-34
Identity = 75/195 (38.46%), Postives = 122/195 (62.56%), Query Frame = 1
Query:  130 QYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDES-SVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDK-GPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKE 708
            +Y    T FSP G+L Q+E+A+ A+G+  +++GI + +GVV+  EKK+ S L+  S S  K+  +  ++    +G+  D  +L+  +R QA++Y   Y+EP+PV QLV+      Q +TQ GG+ PFGVS L AG+D   G QL+  DPSG+Y  WKA+A+G N   A++ L++ Y +++  ++AV  A+  L +
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGISSKDGVVLVGEKKVTSKLLQTSTSSEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTFSYQEPMPVEQLVQSLCDTKQGYTQYGGLPPFGVSFLFAGWDKNFGFQLFMSDPSGNYAGWKAAAIGANNQAAQSMLKQDYKDDITREEAVQLALKVLSK 198          
The following BLAST results are available for this feature:
BLAST of FC875622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
PSA4_SCHPO2.047e-3438.66Probable proteasome subunit alpha type-4 OS=Schizo... [more]
PSMA_PYRAE2.673e-3439.49Proteasome subunit alpha OS=Pyrobaculum aerophilum... [more]
PSA7_CHICK3.491e-3437.50Proteasome subunit alpha type-7 OS=Gallus gallus G... [more]
PSA5A_ARATH3.491e-3436.76Proteasome subunit alpha type-5-A OS=Arabidopsis t... [more]
PSMA_SULAC4.560e-3438.38Proteasome subunit alpha OS=Sulfolobus acidocaldar... [more]
PSA7_YEAST4.560e-3442.54Proteasome component PRE6 OS=Saccharomyces cerevis... [more]
PSMA_METTE5.955e-3438.12Proteasome subunit alpha OS=Methanosarcina thermop... [more]
PSMA_METM55.955e-3437.56Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSA5B_ARATH5.955e-3436.76Proteasome subunit alpha type-5-B OS=Arabidopsis t... [more]
PSA4_PETHY7.778e-3438.46Proteasome subunit alpha type-4 OS=Petunia hybrida... [more]

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Properties
Property NameValue
Genbank descriptionC31401A03EF CTVClemen1 Citrus clementina cDNA clone C31401A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875622 ID=FC875622; Name=FC875622; organism=Citrus clementina; type=EST; length=740bp
GGTGTCCCCCTCTTCAGAAACCTGGCACTAGAAAAGCACTGACTTTGCGA
CTCTCTCTTTCGTAAATTACCACTCTGATTTCGATTCGATCTCCGAGGCT
TTTTTAATTTAAAAAAAATGGGTGATAGTCAGTATTCGTTCTCTTTGACC
ACTTTCAGTCCTTCTGGGAAGCTTGTTCAGATTGAACATGCCTTAACAGC
TGTTGGATCCGGCCAAACATCTCTGGGAATCAAAGCTTCTAATGGTGTTG
TCATTGCTACGGAGAAGAAACTACCGTCTATTTTGGTTGATGAATCATCT
GTTCATAAGATTCAGTCATTAACACCAAACATTGGAGTTGTATACAGTGG
GATGGGTCCCGATTTTCGGGTCCTTGTTCGAAAAAGTAGGAGGCAGGCAG
AGCAATATCACCGACTATACAAAGAGCCAATTCCTGTTACACAACTTGTA
AGAGAAACTGCTGCTGTGATGCAGGAGTTCACTCAGTCAGGTGGTGTGAG
GCCTTTTGGAGTCTCATTGCTGGTTGCAGGTTATGATGACAAAGGTCCGC
AGTTGTATCAGGTGGATCCTTCAGGTTCATATTTCTCCTGGAAAGCTTCA
GCAATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAGAAGAGGTA
TGTAGAGGAAATGGAGCTCGATGATGCTGTCCACACGGCAATATTGACAC
TAAAGGAAGGGTTTGAAGGACAGATTTCTGAAAAAACATT
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