FC875622

Overview
NameFC875622
Unique NameFC875622
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSMA_METM7 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=psmA PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.327e-33
Identity = 74/197 (37.56%), Postives = 118/197 (59.90%), Query Frame = 1
Query:  127 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFE 717
            S Y  ++T FSP G+L Q+E+A  AV  G T++GIK  +GVV+A ++++ S L+D SS+ KI  +  +I    SG+  D RVL+ ++R +A+     Y E I V  L ++   + Q +TQ GG RPFG++LL+ G D    +L++ DPSG+   +KA+A+G     A   LE +Y E M +++ +  A+  L +  E
Sbjct:    8 SGYDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRHSARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENMTVNEGMELALYALSKTTE 204          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSMA_METMA (Proteasome subunit alpha OS=Methanosarcina mazei GN=psmA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.733e-33
Identity = 77/202 (38.12%), Postives = 120/202 (59.41%), Query Frame = 1
Query:  133 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISEKT 738
            Y  ++T FSP G+L Q+E+A  AV  G T++GIKA++GVV+  +K++ S LV+  S+ KI  +  +IG   SG+  D R LV ++R +A+     Y E I V  + ++     Q +TQ GGVRP+G +LL+AG DD  P+L++ DPSG+   +KA+A+G   +      E  Y E+M +D A+   +  L +  EG+    T
Sbjct:    9 YDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDDHIGAATSGLVADARSLVDRARVEAQVNRVSYDELIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVDDNKPRLFETDPSGALLEYKATAIGAGRNAVVEVFEADYREDMNIDAAILLGMDALYKAAEGKFDAGT 210          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSMA_METMP (Proteasome subunit alpha OS=Methanococcus maripaludis GN=psmA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.263e-33
Identity = 74/197 (37.56%), Postives = 117/197 (59.39%), Query Frame = 1
Query:  127 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFE 717
            S Y  ++T FSP G+L Q+E+A  AV  G T++GIK  +GVV+A ++++ S L+D SS+ KI  +  +I    SG+  D RVL+ ++R +A+     Y E I V  L ++   + Q +TQ GG RPFG++LL+ G D    +L++ DPSG+   +KA+A+G     A   LE +Y E M + + +  A+  L +  E
Sbjct:    8 SGYDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARIEAQMNRVSYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRHSARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENMTVSEGMELALYALSKTTE 204          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSMA_METM6 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=psmA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.263e-33
Identity = 74/197 (37.56%), Postives = 118/197 (59.90%), Query Frame = 1
Query:  127 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFE 717
            S Y  ++T FSP G+L Q+E+A  AV  G T++GIK ++GVV+A ++++ S L+D SS+ KI  +  +I    SG+  D RVL+ ++R +A+     Y E I V  L ++   + Q +TQ GG RPFG++LL+ G D    +L++ DPSG+   +KA+A+G     A   LE +Y E M + + +  A+  L +  E
Sbjct:    8 SGYDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCNDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRHSARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENMIVSEGMELALYALSKTTE 204          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA5_SOYBN (Proteasome subunit alpha type-5 OS=Glycine max GN=PAE1 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.263e-33
Identity = 74/204 (36.27%), Postives = 122/204 (59.80%), Query Frame = 1
Query:  127 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPV---TQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQIS 729
            ++Y   + TFSP G+L Q+E+A+ A+  G T++G+K   GVV+A EK++ S L++ SSV KI  +  +IG   SG+  D R LV  +R + + +   Y EP+ V   TQ + + A    E  +    RPFGVSLL+AG+D+ GP LY  DPSG+++     A+G     A + L++++ +++ L +A   A+  LK+  E +++
Sbjct:    6 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNGKAIGSGSEGADSSLQEQFNKDLTLQEAETIALSILKQVMEEKVT 209          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSMA1_HALVO (Proteasome subunit alpha 1 OS=Halobacterium volcanii GN=psmA1 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.956e-33
Identity = 69/187 (36.90%), Postives = 115/187 (61.50%), Query Frame = 1
Query:  133 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAI 693
            Y   +T FSP G+L Q+E+A  AV  G  S+G++   GVV+A +K+  S L++ +SV KI     +IG+  +G   D R L+  +R Q++     Y EPI +  L +E    +Q++TQ GG RPFGV+LL+ G ++  P+LY+ DPSG+ + WKA ++G +  + +  LE+ + +++ LD+ +  A+
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASIGVRTPEGVVLAADKRSRSPLMEPTSVEKIHKADDHIGIASAGHVADARQLIDFARHQSQVNRLRYGEPIGIETLTKEVTDHIQQYTQVGGARPFGVALLIGGVENGTPRLYETDPSGTPYEWKAVSIGADRGDHQEHLEENFRDDLTLDEGIELAL 196          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSMA_METVS (Proteasome subunit alpha OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=psmA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.860e-33
Identity = 74/197 (37.56%), Postives = 117/197 (59.39%), Query Frame = 1
Query:  127 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFE 717
            S Y  ++T FSP G+L Q+E+A  AV  G T++GIK  +GVV+A ++++ S L+D SS+ KI  +  +I    SG+  D RVL+ ++R +A+     Y E I V  L ++   + Q +T  GG RPFG++LL+ G D    +L++ DPSG+   +KA+A+G     A   LE++Y E M + + +  AI  L +  E
Sbjct:    8 SGYDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARVEAQVNRISYGEAITVEALAKKICDIKQAYTHHGGARPFGLALLITGIDRHSARLFETDPSGALIEYKATAIGSGRPVAMEILEEKYDENMSVSEGMELAIYALSKTTE 204          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA3_YEAST (Proteasome component C1 OS=Saccharomyces cerevisiae GN=PRE10 PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 5.042e-33
Identity = 75/171 (43.86%), Postives = 102/171 (59.65%), Query Frame = 1
Query:  133 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEK 645
            Y  S + FSP G+  Q+E+A+ AV +G TS+GIK ++GVV A EK + S L+      KIQ +  +IG VYSG+ PD R LV + R +A  + +LYK PIP+          +Q  T    VRPFGVS +  G D  G  LY ++PSGSY+ +K +A GK   +AK  LEK
Sbjct:    8 YDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEK 178          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA7_TRYBB (Proteasome subunit alpha type-7 OS=Trypanosoma brucei brucei GN=PSA4 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.585e-33
Identity = 74/196 (37.76%), Postives = 114/196 (58.16%), Query Frame = 1
Query:  133 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKG-PQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFE 717
            Y  ++T FSP G L Q+E+A  AV  G  ++G+K  + ++ A EKK    L D  +  KI  L  +I +  +G+  D RV+V  ++ + +++   Y++ I V  LVR  A V Q  TQS G RP+GVS ++ G+++ G PQL++ +PSG+  +W A+A+G+N      F+EK Y + M  D  VH AI  L E  E
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVRKGLCAVGVKGKDSIIFAVEKKSVQKLQDSRTTRKIYKLDEHIYLASAGLSADARVVVNHAQLECQRFRLSYEDAIDVDLLVRYVARVQQRSTQSSGSRPYGVSTIIGGFNENGQPQLWKTEPSGTSSAWNAAAIGRNDKVVLEFMEKNYQDGMTRDRCVHFAIKALLEAVE 198          
BLAST of FC875622 vs. ExPASy Swiss-Prot
Match: PSA7_CAEEL (Proteasome subunit alpha type-7 OS=Caenorhabditis elegans GN=pas-4 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.585e-33
Identity = 67/185 (36.22%), Postives = 116/185 (62.70%), Query Frame = 1
Query:  127 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRRQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKG-PQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDA 678
            ++Y  ++T FSP G L Q+E+A  AV  G T++G++  + +VI  EKK    L D+ ++ KI  +  ++ + ++G+  D RVLV ++R + + Y    ++P+ V  + R  A   Q FTQS G RPFG+S+L+ G+D  G P+L++ +PSG+Y+ + A+A G+     + +LE++Y EE  +D+A
Sbjct:    2 NRYDRAITIFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDCIVIGVEKKSIPALQDDRTIRKIHMIDDHVMLAFAGLSADARVLVDRARIECQSYKLTLEDPVTVAYISRYIANTKQRFTQSPGRRPFGISMLIGGFDHDGTPRLFKTEPSGAYYEYVANATGRGEKPVREYLEEQYSEENTVDEA 186          
The following BLAST results are available for this feature:
BLAST of FC875622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
PSMA_METM71.327e-3337.56Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_METMA1.733e-3338.12Proteasome subunit alpha OS=Methanosarcina mazei G... [more]
PSMA_METMP2.263e-3337.56Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_METM62.263e-3337.56Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSA5_SOYBN2.263e-3336.27Proteasome subunit alpha type-5 OS=Glycine max GN=... [more]
PSMA1_HALVO2.956e-3336.90Proteasome subunit alpha 1 OS=Halobacterium volcan... [more]
PSMA_METVS3.860e-3337.56Proteasome subunit alpha OS=Methanococcus vannieli... [more]
PSA3_YEAST5.042e-3343.86Proteasome component C1 OS=Saccharomyces cerevisia... [more]
PSA7_TRYBB6.585e-3337.76Proteasome subunit alpha type-7 OS=Trypanosoma bru... [more]
PSA7_CAEEL6.585e-3336.22Proteasome subunit alpha type-7 OS=Caenorhabditis ... [more]

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Properties
Property NameValue
Genbank descriptionC31401A03EF CTVClemen1 Citrus clementina cDNA clone C31401A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875622 ID=FC875622; Name=FC875622; organism=Citrus clementina; type=EST; length=740bp
GGTGTCCCCCTCTTCAGAAACCTGGCACTAGAAAAGCACTGACTTTGCGA
CTCTCTCTTTCGTAAATTACCACTCTGATTTCGATTCGATCTCCGAGGCT
TTTTTAATTTAAAAAAAATGGGTGATAGTCAGTATTCGTTCTCTTTGACC
ACTTTCAGTCCTTCTGGGAAGCTTGTTCAGATTGAACATGCCTTAACAGC
TGTTGGATCCGGCCAAACATCTCTGGGAATCAAAGCTTCTAATGGTGTTG
TCATTGCTACGGAGAAGAAACTACCGTCTATTTTGGTTGATGAATCATCT
GTTCATAAGATTCAGTCATTAACACCAAACATTGGAGTTGTATACAGTGG
GATGGGTCCCGATTTTCGGGTCCTTGTTCGAAAAAGTAGGAGGCAGGCAG
AGCAATATCACCGACTATACAAAGAGCCAATTCCTGTTACACAACTTGTA
AGAGAAACTGCTGCTGTGATGCAGGAGTTCACTCAGTCAGGTGGTGTGAG
GCCTTTTGGAGTCTCATTGCTGGTTGCAGGTTATGATGACAAAGGTCCGC
AGTTGTATCAGGTGGATCCTTCAGGTTCATATTTCTCCTGGAAAGCTTCA
GCAATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAGAAGAGGTA
TGTAGAGGAAATGGAGCTCGATGATGCTGTCCACACGGCAATATTGACAC
TAAAGGAAGGGTTTGAAGGACAGATTTCTGAAAAAACATT
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