FC875624

Overview
NameFC875624
Unique NameFC875624
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX8_ARATH (Probable glutathione peroxidase 8 OS=Arabidopsis thaliana GN=GPX8 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.292e-53
Identity = 57/96 (59.38%), Postives = 74/96 (77.08%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 622
            P      +EPG+N++I +  CT FK+EFPIF+KI+VNG+NA+P+YKFLK  K G  GD I+WNF KFLV+K G+ V+RY PTTSPL +E DI+NLL
Sbjct:   69 PCNQFGDEEPGTNDQITDFVCTRFKSEFPIFNKIEVNGENASPLYKFLKKGKWGIFGDDIQWNFAKFLVDKNGQAVQRYYPTTSPLTLEHDIKNLL 164          

HSP 2 Score: 102.064 bits (253), Expect = 2.292e-53
Identity = 46/76 (60.53%), Postives = 63/76 (82.89%), Query Frame = 3
Query:  129 MATQEAPKSIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQLQD 356
            MAT+E P+S+Y+ S++D +GN+++LS Y+ KVLL+VNVASKCG+T SNY ELN LY +YK++  E+LAFPCNQ  D
Sbjct:    1 MATKE-PESVYELSIEDAKGNNLALSQYKDKVLLIVNVASKCGMTNSNYTELNELYNRYKDKGLEILAFPCNQFGD 75          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX5_ARATH (Probable glutathione peroxidase 5 OS=Arabidopsis thaliana GN=GPX5 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 4.231e-52
Identity = 58/96 (60.42%), Postives = 73/96 (76.04%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 622
            P      QEPG++EE  + ACT FKAE+P+F K+ VNG+NAAP+YKFLKS+K  FLG  IKWNFTKFLV K+G+V++RY  T SPL I+KDI+  L
Sbjct:   74 PCNQFLSQEPGTSEEAHQFACTRFKAEYPVFQKVRVNGQNAAPVYKFLKSKKPSFLGSRIKWNFTKFLVGKDGQVIDRYGTTVSPLSIQKDIEKAL 169          

HSP 2 Score: 95.9005 bits (237), Expect = 4.231e-52
Identity = 46/66 (69.70%), Postives = 53/66 (80.30%), Query Frame = 3
Query:  150 KSIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            KSI+ F+VKD  G +V LS Y+GKVLLVVNVASKCG T+SNY +L  LY KYK+Q F VLAFPCNQ
Sbjct:   12 KSIHQFTVKDSSGKEVDLSVYQGKVLLVVNVASKCGFTESNYTQLTELYRKYKDQGFVVLAFPCNQ 77          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX4_ARATH (Probable glutathione peroxidase 4 OS=Arabidopsis thaliana GN=GPX4 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 8.491e-50
Identity = 55/89 (61.80%), Postives = 68/89 (76.40%), Query Frame = 2
Query:  356 QEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 622
            QEPG+++E  E AC  FKAE+P+F K+ VNG+NAAPIYKFLK+ K  FLG  IKWNFTKFLV K+G V++RY    +PL IEKDI+  L
Sbjct:   79 QEPGTSQEAHEFACERFKAEYPVFQKVRVNGQNAAPIYKFLKASKPTFLGSRIKWNFTKFLVGKDGLVIDRYGTMVTPLSIEKDIKKAL 167          

HSP 2 Score: 97.4413 bits (241), Expect = 8.491e-50
Identity = 42/66 (63.64%), Postives = 56/66 (84.85%), Query Frame = 3
Query:  150 KSIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            +S++ F+VKD  G D+++S Y+GKVLL+VNVASKCG T++NY +L  LY KYK+QDFE+LAFPCNQ
Sbjct:   10 RSVHQFTVKDSSGKDLNMSIYQGKVLLIVNVASKCGFTETNYTQLTELYRKYKDQDFEILAFPCNQ 75          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX1_CAEEL (Probable glutathione peroxidase F26E4.12 OS=Caenorhabditis elegans GN=F26E4.12 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.138e-46
Identity = 53/97 (54.64%), Postives = 68/97 (70.10%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLLG 625
            P    AGQEP    +IQ      FK E  +F KIDVNG   +P++KFLK+EKGGF+ DAIKWNFTKFLV ++GK+++R+ PTT P  +EKDI+  LG
Sbjct:   64 PCNQFAGQEPSCEIDIQAFVADKFKFEPTLFQKIDVNGDKQSPLFKFLKNEKGGFMFDAIKWNFTKFLVGRDGKIIKRFGPTTDPKDMEKDIKEALG 160          

HSP 2 Score: 90.8929 bits (224), Expect = 3.138e-46
Identity = 41/65 (63.08%), Postives = 51/65 (78.46%), Query Frame = 3
Query:  153 SIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            S+YDF+VK+  G+DVSLS Y+GKVL++VNVAS+CGLT  NY +L  L + YK    EVLAFPCNQ
Sbjct:    3 SVYDFNVKNANGDDVSLSDYKGKVLIIVNVASQCGLTNKNYTQLKELLDVYKKDGLEVLAFPCNQ 67          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX2_CAEEL (Probable glutathione peroxidase R05H10.5 OS=Caenorhabditis elegans GN=R05H10.5 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.334e-42
Identity = 53/96 (55.21%), Postives = 65/96 (67.71%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 622
            P     GQEP    +I       FK E  +F KIDVNG N AP+YKFLK EKGGFL DAIKWNFTKFLV ++G V++R++PTT P  ++KDI+  L
Sbjct:   64 PCNQFGGQEPSCEIDIAAFVADKFKFEPTLFQKIDVNGDNTAPLYKFLKQEKGGFLVDAIKWNFTKFLVGRDGHVIKRFSPTTEPKDMKKDIEAAL 159          

HSP 2 Score: 80.8777 bits (198), Expect = 4.334e-42
Identity = 36/65 (55.38%), Postives = 47/65 (72.31%), Query Frame = 3
Query:  153 SIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            S++  +VK+ +G D  LS Y+GKVL++VNVAS+CGLT SNY +   L + YK    EVLAFPCNQ
Sbjct:    3 SVHGITVKNAQGEDTPLSNYQGKVLIIVNVASQCGLTNSNYNQFKELLDVYKKDGLEVLAFPCNQ 67          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: BSAA_BACHD (Glutathione peroxidase homolog bsaA OS=Bacillus halodurans GN=bsaA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 9.345e-39
Identity = 47/96 (48.96%), Postives = 66/96 (68.75%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 622
            P      QEPG + EI       +   FPIF+K+ VNGK A P++++L S++GG   + IKWNFTKFL+++ G VV+RYAP+TSP+KI+ DI+ LL
Sbjct:   62 PSNQFMNQEPGDHNEIAAFCERNYGVSFPIFEKVKVNGKEAHPLFQYLTSQQGGLFTEKIKWNFTKFLIDRSGNVVKRYAPSTSPIKIKDDIEELL 157          

HSP 2 Score: 76.2554 bits (186), Expect = 9.345e-39
Identity = 37/69 (53.62%), Postives = 50/69 (72.46%), Query Frame = 3
Query:  153 SIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQLQDR 359
            SI++FS + I G + +LS Y+ +VLL+VN ASKCGLT   Y+EL +LYE YK+Q F VL FP NQ  ++
Sbjct:    2 SIHEFSARLINGEEKALSDYKDQVLLIVNTASKCGLT-PQYEELQILYETYKDQGFTVLGFPSNQFMNQ 69          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPO_LACLA (Glutathione peroxidase OS=Lactococcus lactis subsp. lactis GN=gpo PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 2.911e-37
Identity = 48/96 (50.00%), Postives = 62/96 (64.58%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 622
            P      Q+ G N EI E     +   FP+F KI VNGK A P+Y+FLK E  G L   IKWNFTKFL+++EG V+ER+AP T P ++E++IQ LL
Sbjct:   62 PCNQFVNQDAGENSEINEFCQLNYGVTFPMFQKIKVNGKEAHPLYQFLKKEAKGALSGTIKWNFTKFLIDREGNVIERFAPKTEPKEMEEEIQKLL 157          

HSP 2 Score: 73.1738 bits (178), Expect = 2.911e-37
Identity = 34/65 (52.31%), Postives = 45/65 (69.23%), Query Frame = 3
Query:  153 SIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            + YDFS   + G  VS+S ++GKV++VVN ASKCG T   ++ L  LYE YK+Q  E+L FPCNQ
Sbjct:    2 NFYDFSAFKMNGETVSMSDFKGKVVIVVNTASKCGFT-PQFEGLEKLYENYKDQGLEILGFPCNQ 65          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX4_SPIOL (Probable phospholipid hydroperoxide glutathione peroxidase OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.290e-37
Identity = 70/97 (72.16%), Postives = 79/97 (81.44%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLLG 625
            P      QEPGSNEE+ E ACT FKAE+PIFDK+DVNG NAAPIYKFLKS KGG  GD +KWNFTKFLV+K+G VV+RYAPTTSP  IEKD++ LLG
Sbjct:   72 PCNQFGNQEPGSNEEVLEFACTRFKAEYPIFDKVDVNGSNAAPIYKFLKSSKGGLFGDGLKWNFTKFLVDKDGNVVDRYAPTTSPKSIEKDVKKLLG 168          

HSP 2 Score: 100.908 bits (250), Expect = 6.262e-21
Identity = 49/92 (53.26%), Postives = 64/92 (69.57%), Query Frame = 3
Query:  147 PKSIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQLQDRSQEAMRKFRKLHAQCSKLNSQ 422
            PKS+++F V+D RGNDV LS Y+GKVLL+VNVAS+CGLT SNY E+  LYEKY+    E+LAFPCNQ    +QE       L   C++  ++
Sbjct:    9 PKSVHEFVVRDARGNDVDLSIYKGKVLLIVNVASQCGLTNSNYTEMTELYEKYRELGLEILAFPCNQF--GNQEPGSNEEVLEFACTRFKAE 98          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX4_TOBAC (Probable phospholipid hydroperoxide glutathione peroxidase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.830e-36
Identity = 69/97 (71.13%), Postives = 81/97 (83.51%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLLG 625
            P     GQEPGS EEIQ + CT FKAE+PIFDK+DVNG NAAP+YKFLKS KGGF GD+IKWNF+KFLV+KEG VV+RY+PTT+P  +EKDI+ LLG
Sbjct:   71 PCNQFGGQEPGSIEEIQNMVCTRFKAEYPIFDKVDVNGDNAAPLYKFLKSSKGGFFGDSIKWNFSKFLVDKEGNVVDRYSPTTTPASMEKDIKKLLG 167          

HSP 2 Score: 105.531 bits (262), Expect = 2.542e-22
Identity = 48/89 (53.93%), Postives = 69/89 (77.53%), Query Frame = 3
Query:  129 MATQEA-PKSIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQLQDRSQEAMRKFRKL 392
            MA+Q + P+SIYDF+VKD +GNDV LS Y+GKVL++VNVAS+CGLT SNY ++  +Y+KYK+Q  E+LAFPCNQ   +   ++ + + +
Sbjct:    1 MASQSSKPQSIYDFTVKDAKGNDVDLSIYKGKVLIIVNVASQCGLTNSNYTDMTEIYKKYKDQGLEILAFPCNQFGGQEPGSIEEIQNM 89          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX4_NICSY (Probable phospholipid hydroperoxide glutathione peroxidase OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.830e-36
Identity = 69/97 (71.13%), Postives = 81/97 (83.51%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLLG 625
            P     GQEPGS EEIQ + CT FKAE+PIFDK+DVNG NAAP+YKFLKS KGGF GD+IKWNF+KFLV+KEG VV+RY+PTT+P  +EKDI+ LLG
Sbjct:   71 PCNQFGGQEPGSIEEIQNMVCTRFKAEYPIFDKVDVNGDNAAPLYKFLKSSKGGFFGDSIKWNFSKFLVDKEGNVVDRYSPTTTPASMEKDIKKLLG 167          

HSP 2 Score: 106.301 bits (264), Expect = 1.490e-22
Identity = 49/89 (55.06%), Postives = 69/89 (77.53%), Query Frame = 3
Query:  129 MATQEA-PKSIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQLQDRSQEAMRKFRKL 392
            MA+Q + P+SIYDF+VKD +GNDV LS Y+GKVL++VNVAS+CGLT SNY +L  +Y+KYK+Q  E+LAFPCNQ   +   ++ + + +
Sbjct:    1 MASQSSKPQSIYDFTVKDAKGNDVDLSIYKGKVLIIVNVASQCGLTNSNYTDLTEIYKKYKDQGLEILAFPCNQFGGQEPGSIEEIQNM 89          
The following BLAST results are available for this feature:
BLAST of FC875624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
GPX8_ARATH2.292e-5359.38Probable glutathione peroxidase 8 OS=Arabidopsis t... [more]
GPX5_ARATH4.231e-5260.42Probable glutathione peroxidase 5 OS=Arabidopsis t... [more]
GPX4_ARATH8.491e-5061.80Probable glutathione peroxidase 4 OS=Arabidopsis t... [more]
GPX1_CAEEL3.138e-4654.64Probable glutathione peroxidase F26E4.12 OS=Caenor... [more]
GPX2_CAEEL4.334e-4255.21Probable glutathione peroxidase R05H10.5 OS=Caenor... [more]
BSAA_BACHD9.345e-3948.96Glutathione peroxidase homolog bsaA OS=Bacillus ha... [more]
GPO_LACLA2.911e-3750.00Glutathione peroxidase OS=Lactococcus lactis subsp... [more]
GPX4_SPIOL6.290e-3772.16Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_TOBAC1.830e-3671.13Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_NICSY1.830e-3671.13Probable phospholipid hydroperoxide glutathione pe... [more]

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Properties
Property NameValue
Genbank descriptionC31401A05EF CTVClemen1 Citrus clementina cDNA clone C31401A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875624 ID=FC875624; Name=FC875624; organism=Citrus clementina; type=EST; length=670bp
ATTTCTGTTATAAATGACGTATGACATTGCGTTTGATGAAAAATAGCAAC
TGGGTTTCATTCCTTTTTATTGTGTTCGCATTTTTCTTGTATTTTTACAA
ATACCCATCTTCTTTTTCTGCAAAGAATATGGCTACGCAAGAGGCTCCCA
AGTCCATCTATGACTTCTCTGTCAAGGATATTCGTGGAAATGATGTGAGT
CTAAGTGGGTACCGTGGGAAGGTTCTCCTGGTAGTGAATGTTGCTTCCAA
ATGTGGCTTAACGCAATCTAACTATAAGGAACTGAATGTTTTGTATGAAA
AATACAAAAACCAAGACTTTGAGGTCCTTGCGTTCCCTTGCAACCAGTTG
CAGGACAGGAGCCAGGAAGCAATGAGGAAATTCAGGAAGTTGCATGCACA
ATGTTCAAAGCTGAATTCCCAATCTTTGATAAGATTGATGTGAATGGAAA
GAATGCGGCACCTATTTACAAGTTTCTAAAATCAGAGAAAGGAGGATTCC
TTGGAGATGCAATCAAGTGGAATTTTACCAAGTTTCTGGTTAATAAAGAA
GGGAAGGTTGTAGAGAGATATGCTCCTACAACATCACCTCTTAAGATCGA
GAAAGACATACAAAATCTGCTGGGATCATGTTGAATACAAGGATGCTGTG
AAGATCCAATTTCATGATGT
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