FC875624

Overview
NameFC875624
Unique NameFC875624
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPO_LACLM (Glutathione peroxidase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=gpo PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.854e-36
Identity = 46/96 (47.92%), Postives = 63/96 (65.62%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 622
            P    A Q+ G N EI E     +   F +F KI VNGK A P+Y+FLK E  G L   IKWNFTKFL++++G+V+ER+AP T P ++E++I+ LL
Sbjct:   62 PCNQFANQDAGENTEINEFCQLNYGVTFTMFQKIKVNGKEAHPLYQFLKKEAKGALSGTIKWNFTKFLIDRDGQVIERFAPKTEPEEMEEEIKKLL 157          

HSP 2 Score: 75.0998 bits (183), Expect = 1.854e-36
Identity = 35/69 (50.72%), Postives = 47/69 (68.12%), Query Frame = 3
Query:  153 SIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQLQDR 359
            + YDFS   + G  VS+S Y+GKV++VVN ASKCG T   ++ L  LYE YK+Q  E+L FPCNQ  ++
Sbjct:    2 NFYDFSAVKMNGETVSMSDYKGKVVIVVNTASKCGFT-PQFEGLEKLYETYKDQGLEILGFPCNQFANQ 69          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: BSAA_STAAW (Glutathione peroxidase homolog bsaA OS=Staphylococcus aureus (strain MW2) GN=bsaA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.766e-35
Identity = 43/96 (44.79%), Postives = 64/96 (66.67%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 622
            P     GQEPGS EE  +     +   FP+  KIDV G++  P++++L + + GF  + IKWNFTKFLV++EG VV+R+AP   P++IE++I+ LL
Sbjct:   63 PCNQFGGQEPGSGEEAAQNCKLNYGVTFPMHQKIDVKGEHQLPLFRYLTAAQHGFFNEKIKWNFTKFLVDREGNVVKRFAPQKKPVQIEREIEKLL 158          

HSP 2 Score: 72.0182 bits (175), Expect = 5.766e-35
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 3
Query:  150 KSIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            ++IYDF V+  +G    L  Y+G V+L+VN AS+CG T S ++ L  LYEKYK+Q F +L FPCNQ
Sbjct:    2 ETIYDFVVETNKGVTYKLDAYKGDVMLIVNTASECGFT-SQFEGLQSLYEKYKDQGFVILGFPCNQ 66          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: BSAA_STAAS (Glutathione peroxidase homolog bsaA OS=Staphylococcus aureus (strain MSSA476) GN=bsaA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.766e-35
Identity = 43/96 (44.79%), Postives = 64/96 (66.67%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 622
            P     GQEPGS EE  +     +   FP+  KIDV G++  P++++L + + GF  + IKWNFTKFLV++EG VV+R+AP   P++IE++I+ LL
Sbjct:   63 PCNQFGGQEPGSGEEAAQNCKLNYGVTFPMHQKIDVKGEHQLPLFRYLTAAQHGFFNEKIKWNFTKFLVDREGNVVKRFAPQKKPVQIEREIEKLL 158          

HSP 2 Score: 72.0182 bits (175), Expect = 5.766e-35
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 3
Query:  150 KSIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            ++IYDF V+  +G    L  Y+G V+L+VN AS+CG T S ++ L  LYEKYK+Q F +L FPCNQ
Sbjct:    2 ETIYDFVVETNKGVTYKLDAYKGDVMLIVNTASECGFT-SQFEGLQSLYEKYKDQGFVILGFPCNQ 66          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: BSAA_STAAR (Glutathione peroxidase homolog bsaA OS=Staphylococcus aureus (strain MRSA252) GN=bsaA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.766e-35
Identity = 43/96 (44.79%), Postives = 64/96 (66.67%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 622
            P     GQEPGS EE  +     +   FP+  KIDV G++  P++++L + + GF  + IKWNFTKFLV++EG VV+R+AP   P++IE++I+ LL
Sbjct:   63 PCNQFGGQEPGSGEEAAQNCKLNYGVTFPMHQKIDVKGEHQLPLFRYLTAAQHGFFNEKIKWNFTKFLVDREGNVVKRFAPQKKPVQIEREIEKLL 158          

HSP 2 Score: 72.0182 bits (175), Expect = 5.766e-35
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 3
Query:  150 KSIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            ++IYDF V+  +G    L  Y+G V+L+VN AS+CG T S ++ L  LYEKYK+Q F +L FPCNQ
Sbjct:    2 ETIYDFVVETNKGVTYKLDAYKGDVMLIVNTASECGFT-SQFEGLQSLYEKYKDQGFVILGFPCNQ 66          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: BSAA_STAAN (Glutathione peroxidase homolog bsaA OS=Staphylococcus aureus (strain N315) GN=bsaA PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.766e-35
Identity = 43/96 (44.79%), Postives = 64/96 (66.67%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 622
            P     GQEPGS EE  +     +   FP+  KIDV G++  P++++L + + GF  + IKWNFTKFLV++EG VV+R+AP   P++IE++I+ LL
Sbjct:   63 PCNQFGGQEPGSGEEAAQNCKLNYGVTFPMHQKIDVKGEHQLPLFRYLTAAQHGFFNEKIKWNFTKFLVDREGNVVKRFAPQKKPVQIEREIEKLL 158          

HSP 2 Score: 72.0182 bits (175), Expect = 5.766e-35
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 3
Query:  150 KSIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            ++IYDF V+  +G    L  Y+G V+L+VN AS+CG T S ++ L  LYEKYK+Q F +L FPCNQ
Sbjct:    2 ETIYDFVVETNKGVTYKLDAYKGDVMLIVNTASECGFT-SQFEGLQSLYEKYKDQGFVILGFPCNQ 66          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: BSAA_STAAM (Glutathione peroxidase homolog bsaA OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=bsaA PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.766e-35
Identity = 43/96 (44.79%), Postives = 64/96 (66.67%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 622
            P     GQEPGS EE  +     +   FP+  KIDV G++  P++++L + + GF  + IKWNFTKFLV++EG VV+R+AP   P++IE++I+ LL
Sbjct:   63 PCNQFGGQEPGSGEEAAQNCKLNYGVTFPMHQKIDVKGEHQLPLFRYLTAAQHGFFNEKIKWNFTKFLVDREGNVVKRFAPQKKPVQIEREIEKLL 158          

HSP 2 Score: 72.0182 bits (175), Expect = 5.766e-35
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 3
Query:  150 KSIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            ++IYDF V+  +G    L  Y+G V+L+VN AS+CG T S ++ L  LYEKYK+Q F +L FPCNQ
Sbjct:    2 ETIYDFVVETNKGVTYKLDAYKGDVMLIVNTASECGFT-SQFEGLQSLYEKYKDQGFVILGFPCNQ 66          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: BSAA_STAAC (Glutathione peroxidase homolog bsaA OS=Staphylococcus aureus (strain COL) GN=bsaA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.766e-35
Identity = 43/96 (44.79%), Postives = 64/96 (66.67%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 622
            P     GQEPGS EE  +     +   FP+  KIDV G++  P++++L + + GF  + IKWNFTKFLV++EG VV+R+AP   P++IE++I+ LL
Sbjct:   63 PCNQFGGQEPGSGEEAAQNCKLNYGVTFPMHQKIDVKGEHQLPLFRYLTAAQHGFFNEKIKWNFTKFLVDREGNVVKRFAPQKKPVQIEREIEKLL 158          

HSP 2 Score: 72.0182 bits (175), Expect = 5.766e-35
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 3
Query:  150 KSIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            ++IYDF V+  +G    L  Y+G V+L+VN AS+CG T S ++ L  LYEKYK+Q F +L FPCNQ
Sbjct:    2 ETIYDFVVETNKGVTYKLDAYKGDVMLIVNTASECGFT-SQFEGLQSLYEKYKDQGFVILGFPCNQ 66          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX1_PEA (Phospholipid hydroperoxide glutathione peroxidase, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.004e-34
Identity = 68/98 (69.39%), Postives = 77/98 (78.57%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLLGS 628
            P      QEPGSNEEI++ ACT FKAEFPIFDK+DVNG   AP+Y+FLKS  GGF GD +KWNF KFLV+K GKVVERY PTTSP +IEKDIQ LL +
Sbjct:  139 PCNQFGMQEPGSNEEIKQFACTKFKAEFPIFDKVDVNGPFTAPVYQFLKSSSGGFFGDIVKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLAA 236          

HSP 2 Score: 102.834 bits (255), Expect = 1.648e-21
Identity = 56/107 (52.34%), Postives = 74/107 (69.16%), Query Frame = 3
Query:  111 SFSAKNMATQEAPKSIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQL---QDRSQEAMRKFRKLHAQCSKLNSQ 422
            SFS    A ++  K+IYDF+VKDI   DVSLS ++GKVLL+VNVAS+CGLT SNY EL+ LYE +KN+  EVLAFPCNQ    +  S E +++F      C+K  ++
Sbjct:   66 SFSVNAKAIKD--KTIYDFTVKDIDKKDVSLSKFKGKVLLIVNVASRCGLTSSNYTELSHLYENFKNKGLEVLAFPCNQFGMQEPGSNEEIKQF-----ACTKFKAE 165          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPO_SYNY3 (Putative glutathione peroxidase OS=Synechocystis sp. (strain PCC 6803) GN=slr1171 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.927e-32
Identity = 48/102 (47.06%), Postives = 64/102 (62.75%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGG----FLGDA--IKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 622
            P      QEPG + EI+    T +   FP+F+K++VNG NA P++KFL +   G    FLG A  IKWNFTKFLV+++GKVV+RY     P +I  DI+ LL
Sbjct:   68 PCNQFGQQEPGGSGEIKNFCETRYGVTFPLFEKVEVNGPNAHPLFKFLTAASPGMAIPFLGGAEDIKWNFTKFLVDRQGKVVKRYGSIAKPDEIAADIEKLL 169          

HSP 2 Score: 68.5514 bits (166), Expect = 1.927e-32
Identity = 33/71 (46.48%), Postives = 46/71 (64.79%), Query Frame = 3
Query:  135 TQEAPKSIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            T +A  +IY FS   + G+ V+L  + GKVLL+VN AS+CG T   Y+ L  LY ++ ++ F VL FPCNQ
Sbjct:    2 TAQANNTIYGFSANALDGSPVALRDFEGKVLLIVNTASQCGFT-PQYQGLQALYNRFGDRGFTVLGFPCNQ 71          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX4_BOVIN (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Bos taurus GN=GPX4 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 2.498e-32
Identity = 50/94 (53.19%), Postives = 65/94 (69.15%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSE-KG-GFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDI 610
            P      QEPGSN EI+E A   +  +F +F KI VNG +A P++K++K + KG G LG+AIKWNFTKFL++K G VV+RY P   PL IEKD+
Sbjct:  101 PCNQFGRQEPGSNAEIKEFAAG-YNVKFDLFSKICVNGDDAHPLWKWMKVQPKGRGMLGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 193          

HSP 2 Score: 66.2402 bits (160), Expect = 2.498e-32
Identity = 32/66 (48.48%), Postives = 43/66 (65.15%), Query Frame = 3
Query:  150 KSIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            +S+++FS KDI G  V+L  YRG V +V NVAS+ G T  NY +L  L+ +Y      +LAFPCNQ
Sbjct:   39 RSMHEFSAKDIDGRMVNLDKYRGHVCIVTNVASQUGKTDVNYTQLVDLHARYAECGLRILAFPCNQ 104          
The following BLAST results are available for this feature:
BLAST of FC875624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
GPO_LACLM1.854e-3647.92Glutathione peroxidase OS=Lactococcus lactis subsp... [more]
BSAA_STAAW5.766e-3544.79Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
BSAA_STAAS5.766e-3544.79Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
BSAA_STAAR5.766e-3544.79Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
BSAA_STAAN5.766e-3544.79Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
BSAA_STAAM5.766e-3544.79Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
BSAA_STAAC5.766e-3544.79Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
GPX1_PEA1.004e-3469.39Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPO_SYNY31.927e-3247.06Putative glutathione peroxidase OS=Synechocystis s... [more]
GPX4_BOVIN2.498e-3253.19Phospholipid hydroperoxide glutathione peroxidase,... [more]

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Properties
Property NameValue
Genbank descriptionC31401A05EF CTVClemen1 Citrus clementina cDNA clone C31401A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875624 ID=FC875624; Name=FC875624; organism=Citrus clementina; type=EST; length=670bp
ATTTCTGTTATAAATGACGTATGACATTGCGTTTGATGAAAAATAGCAAC
TGGGTTTCATTCCTTTTTATTGTGTTCGCATTTTTCTTGTATTTTTACAA
ATACCCATCTTCTTTTTCTGCAAAGAATATGGCTACGCAAGAGGCTCCCA
AGTCCATCTATGACTTCTCTGTCAAGGATATTCGTGGAAATGATGTGAGT
CTAAGTGGGTACCGTGGGAAGGTTCTCCTGGTAGTGAATGTTGCTTCCAA
ATGTGGCTTAACGCAATCTAACTATAAGGAACTGAATGTTTTGTATGAAA
AATACAAAAACCAAGACTTTGAGGTCCTTGCGTTCCCTTGCAACCAGTTG
CAGGACAGGAGCCAGGAAGCAATGAGGAAATTCAGGAAGTTGCATGCACA
ATGTTCAAAGCTGAATTCCCAATCTTTGATAAGATTGATGTGAATGGAAA
GAATGCGGCACCTATTTACAAGTTTCTAAAATCAGAGAAAGGAGGATTCC
TTGGAGATGCAATCAAGTGGAATTTTACCAAGTTTCTGGTTAATAAAGAA
GGGAAGGTTGTAGAGAGATATGCTCCTACAACATCACCTCTTAAGATCGA
GAAAGACATACAAAATCTGCTGGGATCATGTTGAATACAAGGATGCTGTG
AAGATCCAATTTCATGATGT
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