FC875624

Overview
NameFC875624
Unique NameFC875624
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX1_RAT (Glutathione peroxidase 1 OS=Rattus norvegicus GN=Gpx1 PE=1 SV=4)

HSP 1 Score: 58.5362 bits (140), Expect = 2.979e-18
Identity = 31/69 (44.93%), Postives = 42/69 (60.87%), Query Frame = 3
Query:  144 APKSIYDFSVKDIRGND-VSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            A  ++Y FS + + G + VSL   RGKVLL+ NVAS  G T  +Y E+N L ++   +   VL FPCNQ
Sbjct:   10 AQSTVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTTRDYTEMNDLQKRLGPRGLVVLGFPCNQ 78          

HSP 2 Score: 54.299 bits (129), Expect = 2.979e-18
Identity = 38/120 (31.67%), Postives = 52/120 (43.33%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTM-----FKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDA-------------------IKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 622
            P      QE G NEEI      +     F+  F +F+K +VNG+ A P++ FL++       D                    I WNF KFLV  +G  V RY+     + IE DI+ LL
Sbjct:   75 PCNQFGHQENGKNEEILNSLKYVRPGGGFEPNFTLFEKCEVNGEKAHPLFTFLRNALPAPSDDPTALMTDPKYIIWSPVCRNDISWNFEKFLVGPDGVPVRRYSRRFRTIDIEPDIEALL 194          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX1_MOUSE (Glutathione peroxidase 1 OS=Mus musculus GN=Gpx1 PE=1 SV=2)

HSP 1 Score: 57.7658 bits (138), Expect = 3.874e-18
Identity = 31/69 (44.93%), Postives = 42/69 (60.87%), Query Frame = 3
Query:  144 APKSIYDFSVKDIRGND-VSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            A  ++Y FS + + G + VSL   RGKVLL+ NVAS  G T  +Y E+N L ++   +   VL FPCNQ
Sbjct:   10 AQSTVYAFSARPLTGGEPVSLGSLRGKVLLIENVASLUGTTIRDYTEMNDLQKRLGPRGLVVLGFPCNQ 78          

HSP 2 Score: 54.6842 bits (130), Expect = 3.874e-18
Identity = 38/120 (31.67%), Postives = 54/120 (45.00%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTM-----FKAEFPIFDKIDVNGKNAAPIYKFLKS-------EKGGFLGDA------------IKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 622
            P      QE G NEEI      +     F+  F +F+K +VNG+ A P++ FL++       +    + D             I WNF KFLV  +G  V RY+     + IE DI+ LL
Sbjct:   75 PCNQFGHQENGKNEEILNSLKYVRPGGGFEPNFTLFEKCEVNGEKAHPLFTFLRNALPTPSDDPTALMTDPKYIIWSPVCRNDIAWNFEKFLVGPDGVPVRRYSRRFRTIDIEPDIETLL 194          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX1_PIG (Glutathione peroxidase 1 OS=Sus scrofa GN=GPX1 PE=2 SV=2)

HSP 1 Score: 61.6178 bits (148), Expect = 6.546e-18
Identity = 31/69 (44.93%), Postives = 43/69 (62.32%), Query Frame = 3
Query:  144 APKSIYDFSVKDIRGND-VSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            AP+S+Y FS + + G + +SL   RGKVLL+ NVAS  G T  +Y ++N L  +   +   VL FPCNQ
Sbjct:   15 APRSVYAFSARPLAGGEPISLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQ 83          

HSP 2 Score: 50.0618 bits (118), Expect = 6.546e-18
Identity = 31/92 (33.70%), Postives = 43/92 (46.74%), Query Frame = 2
Query:  404 FKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDA-------------------IKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 622
            F+  F +F+K +VNG NA P++ FL+        DA                   I WNF KFLV  +G  + RY+     + IE DI+ LL
Sbjct:  108 FEPNFMLFEKCEVNGANAHPLFAFLREALPTPSDDATALMTDPKFITWSPVCRNDIAWNFEKFLVGPDGVPLRRYSRRFLTIDIEPDIEALL 199          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX1_BOVIN (Glutathione peroxidase 1 OS=Bos taurus GN=GPX1 PE=1 SV=3)

HSP 1 Score: 58.9214 bits (141), Expect = 8.512e-18
Identity = 30/69 (43.48%), Postives = 43/69 (62.32%), Query Frame = 3
Query:  144 APKSIYDFSVKDIRGND-VSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            AP+++Y FS + + G +  +LS  RGKVLL+ NVAS  G T  +Y ++N L  +   +   VL FPCNQ
Sbjct:   15 APRTVYAFSARPLAGGEPFNLSSLRGKVLLIENVASLUGTTVRDYTQMNDLQRRLGPRGLVVLGFPCNQ 83          

HSP 2 Score: 52.373 bits (124), Expect = 8.512e-18
Identity = 37/120 (30.83%), Postives = 51/120 (42.50%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTM-----FKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDA-------------------IKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 622
            P      QE   NEEI      +     F+  F +F+K +VNG+ A P++ FL+        DA                   + WNF KFLV  +G  V RY+     + IE DI+ LL
Sbjct:   80 PCNQFGHQENAKNEEILNCLKYVRPGGGFEPNFMLFEKCEVNGEKAHPLFAFLREVLPTPSDDATALMTDPKFITWSPVCRNDVSWNFEKFLVGPDGVPVRRYSRRFLTIDIEPDIETLL 199          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX1_MACFU (Glutathione peroxidase 1 OS=Macaca fuscata fuscata GN=GPX1 PE=2 SV=3)

HSP 1 Score: 58.5362 bits (140), Expect = 1.440e-17
Identity = 31/69 (44.93%), Postives = 42/69 (60.87%), Query Frame = 3
Query:  144 APKSIYDFSVKDIRGND-VSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            A +S+Y FS + + G + VSL   RGKVLL+ NVAS  G T  +Y ++N L  +   +   VL FPCNQ
Sbjct:   10 AAQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQ 78          

HSP 2 Score: 51.9878 bits (123), Expect = 1.440e-17
Identity = 37/120 (30.83%), Postives = 50/120 (41.67%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTM-----FKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDA-------------------IKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 622
            P      QE   NEEI      +     F+  F +F+K +VNG  A P++ FL+        DA                   + WNF KFLV  +G  V RY+     + IE DI+ LL
Sbjct:   75 PCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLIAWSPVCRNDVAWNFEKFLVGPDGVPVRRYSRRFQTIDIEPDIEALL 194          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX1_PONPY (Glutathione peroxidase 1 OS=Pongo pygmaeus GN=GPX1 PE=2 SV=2)

HSP 1 Score: 59.3066 bits (142), Expect = 1.872e-17
Identity = 31/69 (44.93%), Postives = 42/69 (60.87%), Query Frame = 3
Query:  144 APKSIYDFSVKDIRGND-VSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            A +S+Y FS + + G + VSL   RGKVLL+ NVAS  G T  +Y ++N L  +   +   VL FPCNQ
Sbjct:   10 AAQSVYSFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQ 78          

HSP 2 Score: 50.8322 bits (120), Expect = 1.872e-17
Identity = 36/120 (30.00%), Postives = 50/120 (41.67%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTM-----FKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDA-------------------IKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 622
            P      QE   NEEI      +     F+  F +F+K +VNG  A P++ FL+        DA                   + WNF KFLV  +G  + RY+     + IE DI+ LL
Sbjct:   75 PCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALL 194          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX1_HUMAN (Glutathione peroxidase 1 OS=Homo sapiens GN=GPX1 PE=1 SV=3)

HSP 1 Score: 58.5362 bits (140), Expect = 3.165e-17
Identity = 31/69 (44.93%), Postives = 42/69 (60.87%), Query Frame = 3
Query:  144 APKSIYDFSVKDIRGND-VSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            A +S+Y FS + + G + VSL   RGKVLL+ NVAS  G T  +Y ++N L  +   +   VL FPCNQ
Sbjct:   10 AAQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQ 78          

HSP 2 Score: 50.8322 bits (120), Expect = 3.165e-17
Identity = 36/120 (30.00%), Postives = 50/120 (41.67%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTM-----FKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDA-------------------IKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 622
            P      QE   NEEI      +     F+  F +F+K +VNG  A P++ FL+        DA                   + WNF KFLV  +G  + RY+     + IE DI+ LL
Sbjct:   75 PCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALL 194          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX1_HYLLA (Glutathione peroxidase 1 OS=Hylobates lar GN=GPX1 PE=2 SV=2)

HSP 1 Score: 58.151 bits (139), Expect = 4.114e-17
Identity = 30/69 (43.48%), Postives = 42/69 (60.87%), Query Frame = 3
Query:  144 APKSIYDFSVKDIRGND-VSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            A +S+Y FS + + G + VSL   RGK+LL+ NVAS  G T  +Y ++N L  +   +   VL FPCNQ
Sbjct:   10 AAQSVYAFSARPLTGGEPVSLGSLRGKILLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQ 78          

HSP 2 Score: 50.8322 bits (120), Expect = 4.114e-17
Identity = 36/120 (30.00%), Postives = 50/120 (41.67%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTM-----FKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDA-------------------IKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 622
            P      QE   NEEI      +     F+  F +F+K +VNG  A P++ FL+        DA                   + WNF KFLV  +G  + RY+     + IE DI+ LL
Sbjct:   75 PCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALL 194          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPXC_DIRIM (Glutathione peroxidase OS=Dirofilaria immitis PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 5.332e-17
Identity = 36/76 (47.37%), Postives = 47/76 (61.84%), Query Frame = 3
Query:  126 NMATQEAPKS--IYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            N+  Q  P S  IYDF V  + G++ SL+ YRGKVLL+VNVA+ C  T   Y + N + E   N   ++LAFPCNQ
Sbjct:   28 NLTKQCEPTSQTIYDFHVPTLDGSEKSLAEYRGKVLLLVNVATYCAYT-FQYNDFNPMLENNSNGTLKILAFPCNQ 102          

HSP 2 Score: 42.743 bits (99), Expect = 5.332e-17
Identity = 25/68 (36.76%), Postives = 36/68 (52.94%), Query Frame = 2
Query:  422 IFDKIDVNGKNAAPIYKFLKS---EKGGFLGDA------------IKWNFTKFLVNKEGKVVERYAPT 580
            IF K++VNG +  P+YKFLK    +    +GD             I WNF KFL++K+G    R+ P+
Sbjct:  135 IFGKVEVNGDDHHPLYKFLKEHCPQTVPIIGDRHQLMYNPIGTNDIIWNFEKFLIDKKGHPRYRFHPS 202          
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX1_RABIT (Glutathione peroxidase 1 OS=Oryctolagus cuniculus GN=GPX1 PE=2 SV=2)

HSP 1 Score: 58.5362 bits (140), Expect = 6.959e-17
Identity = 31/69 (44.93%), Postives = 42/69 (60.87%), Query Frame = 3
Query:  144 APKSIYDFSVKDIRGND-VSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            A +S+Y FS   + G + V+L   RGKVLL+ NVAS  G T  +Y ++N L E+   +   VL FPCNQ
Sbjct:    9 AAQSVYSFSAHPLAGGEPVNLGSLRGKVLLIENVASLUGTTVRDYTQMNELQERLGPRALVVLGFPCNQ 77          

HSP 2 Score: 49.6766 bits (117), Expect = 6.959e-17
Identity = 36/120 (30.00%), Postives = 51/120 (42.50%), Query Frame = 2
Query:  335 PLQPVAGQEPGSNEEIQEVACTM-----FKAEFPIFDKIDVNGKNAAPIYKFLKS-------EKGGFLGDA------------IKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 622
            P      QE   NEEI      +     F+  F +F K +VNG  A+P++ FL+        +    + D             + W+F KFLV  +G  V RY+     + IE DIQ LL
Sbjct:   74 PCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFQKCEVNGAKASPLFAFLREALPPPSDDPTALMTDPKFITWCPVCRNDVSWSFEKFLVGPDGVPVRRYSRRFPTIDIEPDIQALL 193          
The following BLAST results are available for this feature:
BLAST of FC875624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
GPX1_RAT2.979e-1844.93Glutathione peroxidase 1 OS=Rattus norvegicus GN=G... [more]
GPX1_MOUSE3.874e-1844.93Glutathione peroxidase 1 OS=Mus musculus GN=Gpx1 P... [more]
GPX1_PIG6.546e-1844.93Glutathione peroxidase 1 OS=Sus scrofa GN=GPX1 PE=... [more]
GPX1_BOVIN8.512e-1843.48Glutathione peroxidase 1 OS=Bos taurus GN=GPX1 PE=... [more]
GPX1_MACFU1.440e-1744.93Glutathione peroxidase 1 OS=Macaca fuscata fuscata... [more]
GPX1_PONPY1.872e-1744.93Glutathione peroxidase 1 OS=Pongo pygmaeus GN=GPX1... [more]
GPX1_HUMAN3.165e-1744.93Glutathione peroxidase 1 OS=Homo sapiens GN=GPX1 P... [more]
GPX1_HYLLA4.114e-1743.48Glutathione peroxidase 1 OS=Hylobates lar GN=GPX1 ... [more]
GPXC_DIRIM5.332e-1747.37Glutathione peroxidase OS=Dirofilaria immitis PE=2... [more]
GPX1_RABIT6.959e-1744.93Glutathione peroxidase 1 OS=Oryctolagus cuniculus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31401A05EF CTVClemen1 Citrus clementina cDNA clone C31401A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875624 ID=FC875624; Name=FC875624; organism=Citrus clementina; type=EST; length=670bp
ATTTCTGTTATAAATGACGTATGACATTGCGTTTGATGAAAAATAGCAAC
TGGGTTTCATTCCTTTTTATTGTGTTCGCATTTTTCTTGTATTTTTACAA
ATACCCATCTTCTTTTTCTGCAAAGAATATGGCTACGCAAGAGGCTCCCA
AGTCCATCTATGACTTCTCTGTCAAGGATATTCGTGGAAATGATGTGAGT
CTAAGTGGGTACCGTGGGAAGGTTCTCCTGGTAGTGAATGTTGCTTCCAA
ATGTGGCTTAACGCAATCTAACTATAAGGAACTGAATGTTTTGTATGAAA
AATACAAAAACCAAGACTTTGAGGTCCTTGCGTTCCCTTGCAACCAGTTG
CAGGACAGGAGCCAGGAAGCAATGAGGAAATTCAGGAAGTTGCATGCACA
ATGTTCAAAGCTGAATTCCCAATCTTTGATAAGATTGATGTGAATGGAAA
GAATGCGGCACCTATTTACAAGTTTCTAAAATCAGAGAAAGGAGGATTCC
TTGGAGATGCAATCAAGTGGAATTTTACCAAGTTTCTGGTTAATAAAGAA
GGGAAGGTTGTAGAGAGATATGCTCCTACAACATCACCTCTTAAGATCGA
GAAAGACATACAAAATCTGCTGGGATCATGTTGAATACAAGGATGCTGTG
AAGATCCAATTTCATGATGT
back to top