FC875624

Overview
NameFC875624
Unique NameFC875624
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX6_MOUSE (Glutathione peroxidase 6 OS=Mus musculus GN=Gpx6 PE=2 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 7.772e-15
Identity = 31/66 (46.97%), Postives = 40/66 (60.61%), Query Frame = 3 
Query:  153 SIYDFSVKDIRGND-VSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            ++Y++    I G   V+   Y GK +L VNVAS CGLT + Y ELN L E+ K  +  VL FPCNQ
Sbjct:   39 TVYEYGANTIDGGGFVNFQQYAGKHILFVNVASFCGLT-ATYPELNTLQEELKPFNVTVLGFPCNQ 103

HSP 2 Score: 45.4394 bits (106), Expect = 7.772e-15
Identity = 35/116 (30.17%), Postives = 47/116 (40.52%), Query Frame = 2 
Query:  335 PLQPVAGQEPGSNEEIQEVACTM-----FKAEFPIFDKIDVNGKNAAPIYKFLKSE---KGGFLGDA------------IKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 622
            P      QEPG N EI      +     +   F +F+K DVNG N   ++ FLK+         G              I+WNF KFLV  +G  V R+   T    ++ DI   L
Sbjct:  100 PCNQFGKQEPGKNSEILLGLKYVRPGGGYVPNFQLFEKGDVNGDNEQKVFSFLKNSCPPTSELFGSPEHLFWDPMKIHDIRWNFEKFLVGPDGVPVMRWFHHTPVRIVQSDIMEYL 215
[Close]
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX2_MOUSE (Glutathione peroxidase 2 OS=Mus musculus GN=Gpx2 PE=2 SV=3)

HSP 1 Score: 51.9878 bits (123), Expect = 1.016e-14
Identity = 26/66 (39.39%), Postives = 38/66 (57.58%), Query Frame = 3 
Query:  150 KSIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            KS YD S   + G  +  + +RG+ +L+ NVAS  G T  +Y +LN L  ++  +   VL FPCNQ
Sbjct:    6 KSFYDLSAIGLDGEKIDFNTFRGRAVLIENVASLUGTTTRDYNQLNELQCRFPRR-LVVLGFPCNQ 70

HSP 2 Score: 48.9062 bits (115), Expect = 1.016e-14
Identity = 34/120 (28.33%), Postives = 50/120 (41.67%), Query Frame = 2 
Query:  335 PLQPVAGQEPGSNEEIQEVACTM-----FKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDA-------------------IKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 622
            P      QE   NEEI      +     ++  F +  K DVNG+N  P++ +LK +      D                    + WNF KFL+  EG+   RY+ +   + IE DI+ LL
Sbjct:   67 PCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFSLTQKCDVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVSWNFEKFLIGPEGEPFRRYSRSFQTINIEPDIKRLL 186
[Close]
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX5_MACFA (Epididymal secretory glutathione peroxidase OS=Macaca fascicularis GN=GPX5 PE=2 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 1.705e-14
Identity = 33/82 (40.24%), Postives = 44/82 (53.66%), Query Frame = 3 
Query:  105 PSSFSAKNMATQEAPKSIYDFSVKDIRGND-VSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            P   + K    ++   +IYD+    +  N+ V    Y GK +L VNVA+ CGLT + Y ELN L E+ K     VL FPCNQ
Sbjct:   23 PKQETMKMDCHKDEKGTIYDYEAIALNKNEYVPFKQYVGKHILFVNVATYCGLT-AQYPELNALQEELKPYGLVVLGFPCNQ 103

HSP 2 Score: 45.4394 bits (106), Expect = 1.705e-14
Identity = 34/112 (30.36%), Postives = 49/112 (43.75%), Query Frame = 2 
Query:  335 PLQPVAGQEPGSNEEIQEVACTM-----FKAEFPIFDKIDVNGKNAAPIYKFLKSE-------KGGFLGDA--------IKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDI 610
            P      QEPG N+EI      +     F   F +F+K DVNG+    ++ FLK          G F   +        I+WNF KFLV  +G  V R++   +   ++ DI
Sbjct:  100 PCNQFGKQEPGDNKEILPGLKYVRPGGGFVPNFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHRATVSSVKTDI 211
[Close]
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX2_PONPY (Glutathione peroxidase 2 OS=Pongo pygmaeus GN=GPX2 PE=2 SV=2)

HSP 1 Score: 50.8322 bits (120), Expect = 2.898e-14
Identity = 26/66 (39.39%), Postives = 38/66 (57.58%), Query Frame = 3 
Query:  150 KSIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            KS YD S   + G  V  + +RG+ +L+ NVAS  G T  ++ +LN L  ++  +   VL FPCNQ
Sbjct:    6 KSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRR-LVVLGFPCNQ 70

HSP 2 Score: 48.521 bits (114), Expect = 2.898e-14
Identity = 34/120 (28.33%), Postives = 50/120 (41.67%), Query Frame = 2 
Query:  335 PLQPVAGQEPGSNEEIQEVACTM-----FKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDA-------------------IKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 622
            P      QE   NEEI      +     ++  F +  K +VNG+N  P++ +LK +      D                    + WNF KFL+  EG+   RY+ T   + IE DI+ LL
Sbjct:   67 PCNQFGHQENCQNEEILNSLKYVRPGSGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLL 186
[Close]
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX2_HYLLA (Glutathione peroxidase 2 OS=Hylobates lar GN=GPX2 PE=2 SV=2)

HSP 1 Score: 50.8322 bits (120), Expect = 2.898e-14
Identity = 26/66 (39.39%), Postives = 38/66 (57.58%), Query Frame = 3 
Query:  150 KSIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            KS YD S   + G  V  + +RG+ +L+ NVAS  G T  ++ +LN L  ++  +   VL FPCNQ
Sbjct:    6 KSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRR-LVVLGFPCNQ 70

HSP 2 Score: 48.521 bits (114), Expect = 2.898e-14
Identity = 34/120 (28.33%), Postives = 50/120 (41.67%), Query Frame = 2 
Query:  335 PLQPVAGQEPGSNEEIQEVACTM-----FKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDA-------------------IKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 622
            P      QE   NEEI      +     ++  F +  K +VNG+N  P++ +LK +      D                    + WNF KFL+  EG+   RY+ T   + IE DI+ LL
Sbjct:   67 PCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLL 186
[Close]
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX2_HUMAN (Glutathione peroxidase 2 OS=Homo sapiens GN=GPX2 PE=1 SV=3)

HSP 1 Score: 50.8322 bits (120), Expect = 2.898e-14
Identity = 26/66 (39.39%), Postives = 38/66 (57.58%), Query Frame = 3 
Query:  150 KSIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            KS YD S   + G  V  + +RG+ +L+ NVAS  G T  ++ +LN L  ++  +   VL FPCNQ
Sbjct:    6 KSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRR-LVVLGFPCNQ 70

HSP 2 Score: 48.521 bits (114), Expect = 2.898e-14
Identity = 34/120 (28.33%), Postives = 50/120 (41.67%), Query Frame = 2 
Query:  335 PLQPVAGQEPGSNEEIQEVACTM-----FKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDA-------------------IKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 622
            P      QE   NEEI      +     ++  F +  K +VNG+N  P++ +LK +      D                    + WNF KFL+  EG+   RY+ T   + IE DI+ LL
Sbjct:   67 PCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLL 186
[Close]
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX2_CEBAP (Glutathione peroxidase 2 OS=Cebus apella GN=GPX2 PE=2 SV=2)

HSP 1 Score: 50.8322 bits (120), Expect = 3.766e-14
Identity = 26/66 (39.39%), Postives = 38/66 (57.58%), Query Frame = 3 
Query:  150 KSIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            KS YD S   + G  V  + +RG+ +L+ NVAS  G T  ++ +LN L  ++  +   VL FPCNQ
Sbjct:    6 KSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRR-LVVLGFPCNQ 70

HSP 2 Score: 48.1358 bits (113), Expect = 3.766e-14
Identity = 34/120 (28.33%), Postives = 51/120 (42.50%), Query Frame = 2 
Query:  335 PLQPVAGQEPGSNEEIQEVACTM-----FKAEFPIFDKIDVNGKNAAPIYKFLKS-------EKGGFLGDA------------IKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 622
            P      QE   NEEI      +     ++  F +  K +VNG+N  P++ +LK        +    + D             + WNF KFL+  EG+   RY+ T   + IE DI+ LL
Sbjct:   67 PCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPHDDPFSLMTDPKFIIWSPVCRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLL 186
[Close]
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPWA_PSEWI (Glutathione peroxidase OS=Pseudomonas wisconsinensis GN=gpwA PE=3 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 4.858e-14
Identity = 26/63 (41.27%), Postives = 39/63 (61.90%), Query Frame = 3 
Query:  183 RGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQLQDRSQEA 371
            +G ++ L  Y GK L+VVN AS CG T   +K L  LY++YK+Q+ EVL  P +  +  S ++
Sbjct:   38 KGENIELCQYAGKPLVVVNTASFCGFT-PQFKGLEALYQRYKDQELEVLGVPSDDFRQESADS 99

HSP 2 Score: 43.8986 bits (102), Expect = 4.858e-14
Identity = 23/78 (29.49%), Postives = 40/78 (51.28%), Query Frame = 2 
Query:  356 QEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSP 589
            QE   ++E   V    +   F + +   V+G NA P++K L  +         +WNF K++V+++GKVV  ++  T P
Sbjct:   94 QESADSKETATVCYVNYGVTFAMTEPQPVSGANAIPLFKGLAEQSR-----QPRWNFFKYVVDRQGKVVASFSSLTKP 166
[Close]
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX5_MOUSE (Epididymal secretory glutathione peroxidase OS=Mus musculus GN=Gpx5 PE=2 SV=2)

HSP 1 Score: 56.9954 bits (136), Expect = 6.316e-14
Identity = 31/66 (46.97%), Postives = 38/66 (57.58%), Query Frame = 3 
Query:  153 SIYDFSVKDIRGN-DVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            +IYD+    + G  D+    YRGK +L VNVA+ CGLT   Y ELN L E  K     +L FPCNQ
Sbjct:   39 TIYDYEALSLNGKEDIPFKQYRGKHVLFVNVATYCGLT-IQYPELNALQEDLKPFGLVILGFPCNQ 103

HSP 2 Score: 41.2022 bits (95), Expect = 6.316e-14
Identity = 35/116 (30.17%), Postives = 45/116 (38.79%), Query Frame = 2 
Query:  335 PLQPVAGQEPGSNEEIQEVACTM-----FKAEFPIFDKIDVNGKNAAPIYKFLK---------------SEKGGFLGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 622
            P      QEPG N EI      +     F   F +F K DVNG+N   I+ FLK               +         I+WNF KFLV  +G  V R+        ++ DI   L
Sbjct:  100 PCNQFGKQEPGDNLEILPGLKYVRPGKGFLPNFQLFAKGDVNGENEQKIFTFLKRSCPHPSETVVMSKHTSWEPIKVHDIRWNFEKFLVGPDGVPVMRWFHQAPVSTVKSDIMAYL 215
[Close]
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX3_BOVIN (Glutathione peroxidase 3 OS=Bos taurus GN=GPX3 PE=2 SV=2)

HSP 1 Score: 49.2914 bits (116), Expect = 1.065e-13
Identity = 28/66 (42.42%), Postives = 37/66 (56.06%), Query Frame = 3 
Query:  153 SIYDFSVKDIRGND-VSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            +IY++    I G + +    Y GK +L VNVAS  GLT   Y ELN L E+ +     +L FPCNQ
Sbjct:   39 TIYEYGALTIDGEEYIPFKQYAGKYILFVNVASYUGLT-GQYVELNALQEELEPFGLVILGFPCNQ 103

HSP 2 Score: 48.1358 bits (113), Expect = 1.065e-13
Identity = 35/112 (31.25%), Postives = 47/112 (41.96%), Query Frame = 2 
Query:  335 PLQPVAGQEPGSNEEIQEVACTM-----FKAEFPIFDKIDVNGKNAAPIYKFLKSE---KGGFLGDA------------IKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDI 610
            P      QEPG N EI      +     F   F +F+K DVNG+     Y FLK+        LG              I+WNF KFLV  +G  + R+   T+   ++ DI
Sbjct:  100 PCNQFGKQEPGENSEILATLKYVRPGGGFTPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGSPDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWYHRTTVNSVKMDI 211
The following BLAST results are available for this feature:
BLAST of FC875624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
GPX6_MOUSE7.772e-1546.97Glutathione peroxidase 6 OS=Mus musculus GN=Gpx6 P... [more]
GPX2_MOUSE1.016e-1439.39Glutathione peroxidase 2 OS=Mus musculus GN=Gpx2 P... [more]
GPX5_MACFA1.705e-1440.24Epididymal secretory glutathione peroxidase OS=Mac... [more]
GPX2_PONPY2.898e-1439.39Glutathione peroxidase 2 OS=Pongo pygmaeus GN=GPX2... [more]
GPX2_HYLLA2.898e-1439.39Glutathione peroxidase 2 OS=Hylobates lar GN=GPX2 ... [more]
GPX2_HUMAN2.898e-1439.39Glutathione peroxidase 2 OS=Homo sapiens GN=GPX2 P... [more]
GPX2_CEBAP3.766e-1439.39Glutathione peroxidase 2 OS=Cebus apella GN=GPX2 P... [more]
GPWA_PSEWI4.858e-1441.27Glutathione peroxidase OS=Pseudomonas wisconsinens... [more]
GPX5_MOUSE6.316e-1446.97Epididymal secretory glutathione peroxidase OS=Mus... [more]
GPX3_BOVIN1.065e-1342.42Glutathione peroxidase 3 OS=Bos taurus GN=GPX3 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC31401A05EF CTVClemen1 Citrus clementina cDNA clone C31401A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875624 ID=FC875624; Name=FC875624; organism=Citrus clementina; type=EST; length=670bp
ATTTCTGTTATAAATGACGTATGACATTGCGTTTGATGAAAAATAGCAAC
TGGGTTTCATTCCTTTTTATTGTGTTCGCATTTTTCTTGTATTTTTACAA
ATACCCATCTTCTTTTTCTGCAAAGAATATGGCTACGCAAGAGGCTCCCA
AGTCCATCTATGACTTCTCTGTCAAGGATATTCGTGGAAATGATGTGAGT
CTAAGTGGGTACCGTGGGAAGGTTCTCCTGGTAGTGAATGTTGCTTCCAA
ATGTGGCTTAACGCAATCTAACTATAAGGAACTGAATGTTTTGTATGAAA
AATACAAAAACCAAGACTTTGAGGTCCTTGCGTTCCCTTGCAACCAGTTG
CAGGACAGGAGCCAGGAAGCAATGAGGAAATTCAGGAAGTTGCATGCACA
ATGTTCAAAGCTGAATTCCCAATCTTTGATAAGATTGATGTGAATGGAAA
GAATGCGGCACCTATTTACAAGTTTCTAAAATCAGAGAAAGGAGGATTCC
TTGGAGATGCAATCAAGTGGAATTTTACCAAGTTTCTGGTTAATAAAGAA
GGGAAGGTTGTAGAGAGATATGCTCCTACAACATCACCTCTTAAGATCGA
GAAAGACATACAAAATCTGCTGGGATCATGTTGAATACAAGGATGCTGTG
AAGATCCAATTTCATGATGT
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