FC875624

Overview
NameFC875624
Unique NameFC875624
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX3_HYLLA (Glutathione peroxidase 3 OS=Hylobates lar GN=GPX3 PE=2 SV=2)

HSP 1 Score: 49.2914 bits (116), Expect = 1.383e-13
Identity = 35/112 (31.25%), Postives = 48/112 (42.86%), Query Frame = 2 
Query:  335 PLQPVAGQEPGSNEEIQEVACTM-----FKAEFPIFDKIDVNGKNAAPIYKFLKSE---KGGFLGDA------------IKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDI 610
            P      QEPG N EI      +     F   F +F+K DVNG+     Y FLK+        LG +            I+WNF KFLV  +G  + R+   T+   ++ DI
Sbjct:  100 PCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGTPIMRWHHRTTVSNVKMDI 211

HSP 2 Score: 47.7506 bits (112), Expect = 1.383e-13
Identity = 28/66 (42.42%), Postives = 36/66 (54.55%), Query Frame = 3 
Query:  153 SIYDFSVKDIRGND-VSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            +IY++    I G + +    Y GK +L VNVAS  GLT   Y ELN L E+       +L FPCNQ
Sbjct:   39 TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLT-GQYIELNALQEELAPFGLVILGFPCNQ 103
[Close]
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX6_HUMAN (Glutathione peroxidase 6 OS=Homo sapiens GN=GPX6 PE=2 SV=2)

HSP 1 Score: 50.447 bits (119), Expect = 1.385e-13
Identity = 28/66 (42.42%), Postives = 39/66 (59.09%), Query Frame = 3 
Query:  153 SIYDFSVKDIRGND-VSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            +IY++    + G + +    + GK +L VNVA+  GL  + Y ELN L E+ KN    VLAFPCNQ
Sbjct:   39 TIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYUGLA-AQYPELNALQEELKNFGVIVLAFPCNQ 103

HSP 2 Score: 46.595 bits (109), Expect = 1.385e-13
Identity = 35/116 (30.17%), Postives = 50/116 (43.10%), Query Frame = 2 
Query:  335 PLQPVAGQEPGSNEEIQ---EVAC--TMFKAEFPIFDKIDVNGKNAAPIYKFLKSE---KGGFLGDA------------IKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 622
            P      QEPG+N EI    +  C  + F   F +F+K DVNG+    ++ FLK+        LG +            I+WNF KFLV  +G  V  +        ++ DI   L
Sbjct:  100 PCNQFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSCPPTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMHWFHQAPVSTVKSDILEYL 215
[Close]
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX2_CALJA (Glutathione peroxidase 2 OS=Callithrix jacchus GN=GPX2 PE=2 SV=2)

HSP 1 Score: 48.9062 bits (115), Expect = 1.394e-13
Identity = 25/66 (37.88%), Postives = 38/66 (57.58%), Query Frame = 3 
Query:  150 KSIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            KS YD S   + G  V  + +RG+ +L+ NVAS  G T  ++ +LN L  ++  +   VL FPC+Q
Sbjct:    6 KSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRR-LVVLGFPCHQ 70

HSP 2 Score: 48.1358 bits (113), Expect = 1.394e-13
Identity = 34/120 (28.33%), Postives = 51/120 (42.50%), Query Frame = 2 
Query:  335 PLQPVAGQEPGSNEEIQEVACTM-----FKAEFPIFDKIDVNGKNAAPIYKFLKS-------EKGGFLGDA------------IKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 622
            P      QE   NEEI      +     ++  F +  K +VNG+N  P++ +LK        +    + D             + WNF KFL+  EG+   RY+ T   + IE DI+ LL
Sbjct:   67 PCHQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPHDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLL 186
[Close]
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX_ENCCU (Probable phospholipid hydroperoxide glutathione peroxidase OS=Encephalitozoon cuniculi GN=ECU02_0440 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.177e-13
Identity = 42/100 (42.00%), Postives = 61/100 (61.00%), Query Frame = 2 
Query:  335 PLQPVAGQEPGSNEEIQEVACTMFKAEFPIFDKIDVNGKNAAPIYKFLKSEKGGF--LGDAIKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLLGS 628
            P     GQE    EEI+      +   F +FDK+DV GK A P+++ L + K G   LG+ IKWNFTKFLV+++G VV+R+ P+     +++D +NLL S
Sbjct:   70 PCNQYLGQESRPIEEIRGEVSKKYSDRFVVFDKVDVFGKGAHPVFRHLVNTKNGKGRLGNFIKWNFTKFLVDRKGCVVKRFGPSDI---VKEDDENLLRS 166
[Close]
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX3_PONPY (Glutathione peroxidase 3 OS=Pongo pygmaeus GN=GPX3 PE=2 SV=3)

HSP 1 Score: 48.521 bits (114), Expect = 2.335e-13
Identity = 35/112 (31.25%), Postives = 48/112 (42.86%), Query Frame = 2 
Query:  335 PLQPVAGQEPGSNEEIQEVACTM-----FKAEFPIFDKIDVNGKNAAPIYKFLKSE---KGGFLGDA------------IKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDI 610
            P      QEPG N EI      +     F   F +F+K DVNG+     Y FLK+        LG +            I+WNF KFLV  +G  + R+   T+   ++ DI
Sbjct:  100 PCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDI 211

HSP 2 Score: 47.7506 bits (112), Expect = 2.335e-13
Identity = 28/66 (42.42%), Postives = 36/66 (54.55%), Query Frame = 3 
Query:  153 SIYDFSVKDIRGND-VSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            +IY++    I G + +    Y GK +L VNVAS  GLT   Y ELN L E+       +L FPCNQ
Sbjct:   39 TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLT-GQYIELNALQEELAPFGLVILGFPCNQ 103
[Close]
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX3_HUMAN (Glutathione peroxidase 3 OS=Homo sapiens GN=GPX3 PE=1 SV=2)

HSP 1 Score: 48.521 bits (114), Expect = 2.335e-13
Identity = 35/112 (31.25%), Postives = 48/112 (42.86%), Query Frame = 2 
Query:  335 PLQPVAGQEPGSNEEIQEVACTM-----FKAEFPIFDKIDVNGKNAAPIYKFLKSE---KGGFLGDA------------IKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDI 610
            P      QEPG N EI      +     F   F +F+K DVNG+     Y FLK+        LG +            I+WNF KFLV  +G  + R+   T+   ++ DI
Sbjct:  100 PCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDI 211

HSP 2 Score: 47.7506 bits (112), Expect = 2.335e-13
Identity = 28/66 (42.42%), Postives = 36/66 (54.55%), Query Frame = 3 
Query:  153 SIYDFSVKDIRGND-VSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            +IY++    I G + +    Y GK +L VNVAS  GLT   Y ELN L E+       +L FPCNQ
Sbjct:   39 TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLT-GQYIELNALQEELAPFGLVILGFPCNQ 103
[Close]
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX3_RAT (Glutathione peroxidase 3 OS=Rattus norvegicus GN=Gpx3 PE=2 SV=2)

HSP 1 Score: 48.1358 bits (113), Expect = 3.940e-13
Identity = 28/66 (42.42%), Postives = 36/66 (54.55%), Query Frame = 3 
Query:  153 SIYDFSVKDIRGND-VSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            +IY++    I G + +    Y GK +L VNVAS  GLT   Y ELN L E+       +L FPCNQ
Sbjct:   39 TIYEYGALTIDGEEYIPFKQYAGKYILFVNVASYUGLTDQ-YLELNALQEELGPFGLVILGFPCNQ 103

HSP 2 Score: 47.3654 bits (111), Expect = 3.940e-13
Identity = 35/112 (31.25%), Postives = 47/112 (41.96%), Query Frame = 2 
Query:  335 PLQPVAGQEPGSNEEIQEVACTM-----FKAEFPIFDKIDVNGKNAAPIYKFLKSE---KGGFLGDA------------IKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDI 610
            P      QEPG N EI      +     F   F +F+K DVNG+     Y FLK+        LG              I+WNF KFLV  +G  + R+   T+   ++ DI
Sbjct:  100 PCNQFGKQEPGENSEILPSLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTAELLGSPGRLFWEPMKIHDIRWNFEKFLVGPDGIPIMRWYHRTTVSNVKMDI 211
[Close]
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX2_MACFU (Glutathione peroxidase 2 OS=Macaca fuscata fuscata GN=GPX2 PE=2 SV=2)

HSP 1 Score: 50.8322 bits (120), Expect = 3.971e-13
Identity = 26/66 (39.39%), Postives = 38/66 (57.58%), Query Frame = 3 
Query:  150 KSIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            KS YD S   + G  V  + +RG+ +L+ NVAS  G T  ++ +LN L  ++  +   VL FPCNQ
Sbjct:    6 KSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRR-LVVLGFPCNQ 70

HSP 2 Score: 44.669 bits (104), Expect = 3.971e-13
Identity = 33/120 (27.50%), Postives = 50/120 (41.67%), Query Frame = 2 
Query:  335 PLQPVAGQEPGSNEEIQEVACTM-----FKAEFPIFDKIDVNGKNAAPIYKFLKS-------EKGGFLGDA------------IKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDIQNLL 622
            P      QE   NEEI      +     ++  F +  K +VNG+N  P++ +LK        +    + D             + WNF KFL+  E +   RY+ T   + IE DI+ LL
Sbjct:   67 PCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPHDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEVEPFRRYSRTFPTINIEPDIKRLL 186
[Close]
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX7_MOUSE (Glutathione peroxidase 7 OS=Mus musculus GN=Gpx7 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 38/83 (45.78%), Postives = 47/83 (56.63%), Query Frame = 3 
Query:  132 ATQEAPKSIYDFSVKDIRGNDVSLSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQLQDRSQEAMRK 380
            A  ++ +  YDF   +IRG  VSL  YRG V LVVNVAS+CG T  NY+ L  L        F VLAFPCNQ   +  +  R+
Sbjct:   16 ACAQSEQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQNYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDTNRE 98
[Close]
BLAST of FC875624 vs. ExPASy Swiss-Prot
Match: GPX3_CEBAP (Glutathione peroxidase 3 OS=Cebus apella GN=GPX3 PE=2 SV=2)

HSP 1 Score: 47.7506 bits (112), Expect = 6.647e-13
Identity = 36/112 (32.14%), Postives = 48/112 (42.86%), Query Frame = 2 
Query:  335 PLQPVAGQEPGSNEEIQEVACTM-----FKAEFPIFDKIDVNGKNAAPIYKFLKSE---KGGFLGDA------------IKWNFTKFLVNKEGKVVERYAPTTSPLKIEKDI 610
            P      QEPG N EI      +     F   F +F+K DVNG+     Y FLK+        LG +            I+WNF KFLV  +G  V R+   T+   ++ DI
Sbjct:  100 PCNQFGKQEPGENSEILPSLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPVMRWHHRTTISNVKMDI 211

HSP 2 Score: 46.9802 bits (110), Expect = 6.647e-13
Identity = 28/66 (42.42%), Postives = 37/66 (56.06%), Query Frame = 3 
Query:  153 SIYDFSVKDIRGNDVS-LSGYRGKVLLVVNVASKCGLTQSNYKELNVLYEKYKNQDFEVLAFPCNQ 347
            +IY++    I G + +    Y GK +L VNVAS  GLT   Y ELN L E+      ++L FPCNQ
Sbjct:   39 TIYEYGALTIDGEEYTPFKQYIGKYVLFVNVASYUGLT-GQYIELNALQEELAPFGLDLLGFPCNQ 103
The following BLAST results are available for this feature:
BLAST of FC875624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
GPX3_HYLLA1.383e-1331.25Glutathione peroxidase 3 OS=Hylobates lar GN=GPX3 ... [more]
GPX6_HUMAN1.385e-1342.42Glutathione peroxidase 6 OS=Homo sapiens GN=GPX6 P... [more]
GPX2_CALJA1.394e-1337.88Glutathione peroxidase 2 OS=Callithrix jacchus GN=... [more]
GPX_ENCCU2.177e-1342.00Probable phospholipid hydroperoxide glutathione pe... [more]
GPX3_PONPY2.335e-1331.25Glutathione peroxidase 3 OS=Pongo pygmaeus GN=GPX3... [more]
GPX3_HUMAN2.335e-1331.25Glutathione peroxidase 3 OS=Homo sapiens GN=GPX3 P... [more]
GPX3_RAT3.940e-1342.42Glutathione peroxidase 3 OS=Rattus norvegicus GN=G... [more]
GPX2_MACFU3.971e-1339.39Glutathione peroxidase 2 OS=Macaca fuscata fuscata... [more]
GPX7_MOUSE4.806e-1345.78Glutathione peroxidase 7 OS=Mus musculus GN=Gpx7 P... [more]
GPX3_CEBAP6.647e-1332.14Glutathione peroxidase 3 OS=Cebus apella GN=GPX3 P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31401A05EF CTVClemen1 Citrus clementina cDNA clone C31401A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875624 ID=FC875624; Name=FC875624; organism=Citrus clementina; type=EST; length=670bp
ATTTCTGTTATAAATGACGTATGACATTGCGTTTGATGAAAAATAGCAAC
TGGGTTTCATTCCTTTTTATTGTGTTCGCATTTTTCTTGTATTTTTACAA
ATACCCATCTTCTTTTTCTGCAAAGAATATGGCTACGCAAGAGGCTCCCA
AGTCCATCTATGACTTCTCTGTCAAGGATATTCGTGGAAATGATGTGAGT
CTAAGTGGGTACCGTGGGAAGGTTCTCCTGGTAGTGAATGTTGCTTCCAA
ATGTGGCTTAACGCAATCTAACTATAAGGAACTGAATGTTTTGTATGAAA
AATACAAAAACCAAGACTTTGAGGTCCTTGCGTTCCCTTGCAACCAGTTG
CAGGACAGGAGCCAGGAAGCAATGAGGAAATTCAGGAAGTTGCATGCACA
ATGTTCAAAGCTGAATTCCCAATCTTTGATAAGATTGATGTGAATGGAAA
GAATGCGGCACCTATTTACAAGTTTCTAAAATCAGAGAAAGGAGGATTCC
TTGGAGATGCAATCAAGTGGAATTTTACCAAGTTTCTGGTTAATAAAGAA
GGGAAGGTTGTAGAGAGATATGCTCCTACAACATCACCTCTTAAGATCGA
GAAAGACATACAAAATCTGCTGGGATCATGTTGAATACAAGGATGCTGTG
AAGATCCAATTTCATGATGT
back to top