FC875627

Overview
NameFC875627
Unique NameFC875627
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875627_ssr22 microsatellite FC875627_ssr22:22..36. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig989 contig Ccv1_Contig989:2..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: AQPZ_VIBVU (Aquaporin Z OS=Vibrio vulnificus GN=aqpZ PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.185e-11
Identity = 65/205 (31.71%), Postives = 92/205 (44.88%), Query Frame = 1
Query:  154 YLAEFISTLLFVFAGVGSAIAFNKMTADAALDPS---GLVAIAICHGFA-LFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAV--PTHNXXXXXXXXXXXXXXXXXTFGLVYTVYAT--------AADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNF 726
            YLAE   T   V  G GSA+        AA  P    GL+ +++  G   L +A AIG +ISG H+NPAVT GL  GG+      + Y +AQ++G ++A  +L  +  G      T +                 T  LV  V  T         A  ++   G  APIAIG  +    L + P +  S+NP RS G A+  G++
Sbjct:    4 YLAELFGTFWLVLGGCGSAVL-------AAAFPDVGIGLLGVSLAFGLTVLTMAFAIG-HISGCHLNPAVTIGLWAGGRFEAKEIVPYILAQVIGGVIAGGVLYTIASGQMGFDATSSGFASNGYGEHSPGGYSLTSALVTEVVMTMMFLLVILGATDQRAPQG-FAPIAIGLCLTLIHLISIPVTNTSVNPARSTGVALYVGDW 199          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: AQPZ_BORPA (Aquaporin Z OS=Bordetella parapertussis GN=aqpZ PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.185e-11
Identity = 62/205 (30.24%), Postives = 86/205 (41.95%), Query Frame = 1
Query:  145 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFA-LFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGL----------AVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNF 726
            FK   AEF  T   V  G GSA+    + A       G   +A+  G   L +A A+G +ISGGH NPAVT GLA  G+        Y +AQ++G+IVA+  L  +  G+          A   +                       +      A  K+   G  API IG  +    L + P +  S+NP RS GPA+  G +
Sbjct:    5 FKRCGAEFFGTFWLVLGGCGSAV----LAAGVPQVGIGYAGVALAFGLTVLTMAYAVG-HISGGHFNPAVTVGLAASGRFGWRDVPPYIVAQVVGAIVAAATLASIAQGVAGFDLVASKFAANGYGDHSPGKYSMQAALICEIVLSAGFVFVILGATDKRAPAG-FAPIPIGLALTLIHLISIPVTNTSVNPARSTGPALFVGGW 203          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: AQPZ_BORBR (Aquaporin Z OS=Bordetella bronchiseptica GN=aqpZ PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.185e-11
Identity = 62/205 (30.24%), Postives = 86/205 (41.95%), Query Frame = 1
Query:  145 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFA-LFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGL----------AVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNF 726
            FK   AEF  T   V  G GSA+    + A       G   +A+  G   L +A A+G +ISGGH NPAVT GLA  G+        Y +AQ++G+IVA+  L  +  G+          A   +                       +      A  K+   G  API IG  +    L + P +  S+NP RS GPA+  G +
Sbjct:    5 FKRCGAEFFGTFWLVLGGCGSAV----LAAGVPQVGIGYAGVALAFGLTVLTMAYAVG-HISGGHFNPAVTVGLAASGRFGWRDVPPYIVAQVVGAIVAAATLASIAQGVAGFDLVASKFAANGYGDHSPGKYSMQAALICEIVLSAGFVFVILGATDKRAPAG-FAPIPIGLALTLIHLISIPVTNTSVNPARSTGPALFVGGW 203          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: AQP2_MACPR (Aquaporin-2 (Fragment) OS=Macroscelides proboscideus GN=AQP2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.185e-11
Identity = 39/110 (35.45%), Postives = 63/110 (57.27%), Query Frame = 1
Query:  133 SLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT 462
            S+   +A  +EF++TLLFVF G+GSA+ +      + +    ++ I++  G A+   V    +ISG H+NPAVT    +G  ++ L   FY  AQLLG++  + LL  +T
Sbjct:    1 SIAFSRAVFSEFLATLLFVFFGLGSALNW-----PSTVPIPTVLQISMAFGLAIGTLVQTLGHISGAHINPAVTVACLVGCHVSFLRATFYVAAQLLGAVAGAALLHKLT 105          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: AQPZ_CHRVO (Aquaporin Z OS=Chromobacterium violaceum GN=aqpZ PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.138e-11
Identity = 66/206 (32.04%), Postives = 92/206 (44.66%), Query Frame = 1
Query:  148 KAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPS---GLVAIAICHGFALF-VAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVV-TGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYAT--------AADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNF 726
            K+Y AEF+ T   V  G GSA+        AA  P+   G   +A+  G  +  +A AIG +ISG H+NPAV+ GL  GG+        Y +AQ+LG+I A  +L V+ +GG                           LV  V  T         A  K+   G  AP+AIG  +    L + P +  S+NP RS G A+  G +
Sbjct:    2 KSYGAEFLGTFWLVLGGCGSAVL-------AAGFPNLGIGFAGVALAFGLTVVTMAYAIG-HISGCHLNPAVSIGLWAGGRFPAGQLAPYIVAQVLGAIAAGAVLYVIASGGAGFDVAKGFASNGYAEHSPGGYSLLAALVCEVVMTMFFLLVIMGATDKRAPAG-FAPLAIGLALTLIHLISIPVTNTSVNPARSTGVALFVGGW 198          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: AQPM_ARCFU (Probable aquaporin aqpM OS=Archaeoglobus fulgidus GN=aqpM PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.138e-11
Identity = 61/204 (29.90%), Postives = 87/204 (42.65%), Query Frame = 1
Query:  148 KAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPS----GLVAI-------AICHGFALFVAVAIGA--NISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHN-----XXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGP 705
            K + AE + T + VF G G+A+    M A+ A  P+    G+ A+       AI   FAL +A  I +   ISG H+NPAVT  L   G+      + Y +AQ +G+ + S L     G  A                           TF L+  +   A D +  +    A + IG  VG  I   G  +G S+NP R+FGP
Sbjct:    7 KRFTAEVVGTFILVFFGPGAAV-ITLMIANGADKPNEFNIGIGALGGLGDWFAIGMAFALAIAAVIYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGSLLFLACVGPAAATVGGLGATAPFPGIGYGQAILTEAIGTFLLMLVIMGVAVDER--APPGFAGLVIGLTVGGIITTIGNITGSSLNPARTFGP 207          
The following BLAST results are available for this feature:
BLAST of FC875627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
AQPZ_VIBVU4.185e-1131.71Aquaporin Z OS=Vibrio vulnificus GN=aqpZ PE=3 SV=1[more]
AQPZ_BORPA4.185e-1130.24Aquaporin Z OS=Bordetella parapertussis GN=aqpZ PE... [more]
AQPZ_BORBR4.185e-1130.24Aquaporin Z OS=Bordetella bronchiseptica GN=aqpZ P... [more]
AQP2_MACPR4.185e-1135.45Aquaporin-2 (Fragment) OS=Macroscelides proboscide... [more]
AQPZ_CHRVO7.138e-1132.04Aquaporin Z OS=Chromobacterium violaceum GN=aqpZ P... [more]
AQPM_ARCFU7.138e-1129.90Probable aquaporin aqpM OS=Archaeoglobus fulgidus ... [more]

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Properties
Property NameValue
Genbank descriptionC31401A08EF CTVClemen1 Citrus clementina cDNA clone C31401A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875627 ID=FC875627; Name=FC875627; organism=Citrus clementina; type=EST; length=743bp
GCTCGACCGAGATAAACCTTATCTTCTTCTTCTTCTTAAGAAAGACTCGA
GAGAGTTTTTTTTTTCCCCTATTCTCTAGCTCTTTCTTGATCAACAATGG
CTATTGCCTTCGGCCGCTTCGATGATTCTTTCAGCTTAGGCTCCTTCAAG
GCCTATCTTGCTGAGTTTATCTCAACTTTGCTCTTTGTTTTCGCCGGCGT
TGGCTCGGCCATTGCTTTCAACAAGATGACAGCAGATGCAGCACTTGATC
CATCAGGGCTAGTAGCCATCGCTATTTGCCATGGATTTGCTCTATTTGTC
GCAGTTGCAATTGGTGCTAACATCTCAGGTGGCCACGTCAACCCAGCCGT
CACCTTTGGATTGGCTCTTGGTGGCCAAATCACCATCCTCACTGGCATCT
TCTACTGGATTGCCCAACTTCTTGGCTCTATTGTTGCCAGCTTCCTCCTC
AAAGTTGTCACTGGAGGCTTGGCAGTTCCTACCCACAATGTTGCTGCTGG
AGTTGGAGCCATTGAAGGAGTTGTGATGGAGATCATCATCACATTTGGTT
TGGTCTACACGGTCTATGCCACGGCAGCTGACCCCAAGAAGGGATCATTG
GGCACCATTGCACCCATTGCCATTGGTTTCATTGTCGGTGCCAACATCCT
GGCCGCCGGCCCATTCTCCGGTGGTTCCATGAACCCGGNCCGTTCCTTCG
GGCCTGCCGTTGCCAGCGGCAACTTCCCAGACACTGGATCTAC
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