FC875627

Overview
NameFC875627
Unique NameFC875627
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875627_ssr22 microsatellite FC875627_ssr22:22..36. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig989 contig Ccv1_Contig989:2..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: TIP31_ARATH (Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.419e-53
Identity = 107/216 (49.54%), Postives = 138/216 (63.89%), Query Frame = 1
Query:  100 AIAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALD-----PSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNFPD 732
            A  FGR D++    S +A LAEF+ST +FVFA  GS ++ +K+  + A       P GL+ +A+ H FALF AV+   N+SGGHVNPAVTFG  +GG++T +  I+YWIAQLLG+I+A  LL++ T G+                       TFGLVY VY+T  DPK+GSLG IAP+AIG IVGANIL  GPFSG SMNP R+FGPA+    + D
Sbjct:    8 AYGFGRADEATHPDSIRATLAEFLSTFVFVFAAEGSILSLDKLYWEHAAHAGTNTPGGLILVALAHAFALFAAVSAAINVSGGHVNPAVTFGALVGGRVTAIRAIYYWIAQLLGAILACLLLRLTTNGMRPVGFRLASGVGAVNGLVLEIILTFGLVYVVYSTLIDPKRGSLGIIAPLAIGLIVGANILVGGPFSGASMNPARAFGPALVGWRWHD 223          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: TIP32_ARATH (Probable aquaporin TIP3-2 OS=Arabidopsis thaliana GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.286e-52
Identity = 105/209 (50.24%), Postives = 136/209 (65.07%), Query Frame = 1
Query:  100 AIAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALD-----PSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAV 711
            A  FGR D++    S +A LAEF+ST +FVFAG GS +A +K+  D A       P GLV +A+ H  ALF AV+   N+SGGHVNPAVTF   +GG+I+++  I+YW+AQL+G+I+A  LL++ T GL     +                 TF LVY VY+TA DPK+GS+G IAP+AIG IVGANIL  GPF G SMNP R+FGPA+
Sbjct:    8 AYGFGRADEATHPDSIRATLAEFLSTFVFVFAGEGSILALDKLYWDTAAHTGTNTPGGLVLVALAHALALFAAVSAAINVSGGHVNPAVTFAALIGGRISVIRAIYYWVAQLIGAILACLLLRLATNGLRPVGFHVASGVSELHGLLMEIILTFALVYVVYSTAIDPKRGSIGIIAPLAIGLIVGANILVGGPFDGASMNPARAFGPAL 216          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: TIP31_ORYSJ (Probable aquaporin TIP3-1 OS=Oryza sativa subsp. japonica GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.422e-51
Identity = 96/200 (48.00%), Postives = 136/200 (68.00%), Query Frame = 1
Query:  112 GRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAV 711
            GR +D+    + +A ++EF++T +FVFA  GS ++  K+  D +  P GLVA+++ H  AL VAVA+  NISGGHVNPA+TFG  LGG+++++  +FYW+AQLLG++VA+ LL++ TGG+  P                    TFGL+Y  YAT  DPK+G +GTIAP+A+GF++GAN+LA GPF G  MNP R FGPA+
Sbjct:   15 GRSEDATHPDTIRAAISEFLATAIFVFAAEGSILSLGKLYQDMST-PGGLVAVSLAHALALAVAVAVAVNISGGHVNPAITFGALLGGRLSLIRALFYWLAQLLGAVVATLLLRLTTGGMRPPGFALASGVGDWHAVLLEATMTFGLMYAYYATVIDPKRGHVGTIAPLAVGFLLGANMLAGGPFDGAGMNPARVFGPAL 213          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: TIPA_PHAVU (Probable aquaporin TIP-type alpha OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.425e-51
Identity = 100/207 (48.31%), Postives = 137/207 (66.18%), Query Frame = 1
Query:   91 STMAIAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAV 711
            +T   +FGR D++    S +A LAEF ST +FVFAG GS +A  K+  D+A     L+A+A+ H FALF AV+   ++SGGHVNPAV+FG  +GG+I+++  ++YWIAQLLGSIVA+ +L++VT  +     +                 TFGL+YTVY TA DPK+G++  IAP+AIG IVGANIL  GPF G  MNP  +FGP++
Sbjct:    2 ATRRYSFGRTDEATHPDSMRASLAEFASTFIFVFAGEGSGLALVKIYQDSAFSAGELLALALAHAFALFAAVSASMHVSGGHVNPAVSFGALIGGRISVIRAVYYWIAQLLGSIVAALVLRLVTNNMRPSGFHVSPGVGVGHMFILEVVMTFGLMYTVYGTAIDPKRGAVSYIAPLAIGLIVGANILVGGPFDGACMNPALAFGPSL 208          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: TIP31_MAIZE (Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.203e-50
Identity = 96/200 (48.00%), Postives = 133/200 (66.50%), Query Frame = 1
Query:  112 GRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAV 711
            GR +D+    + +A ++EFI+T +FVFA  GS ++  KM  D +    GLVA+A+ H  AL VAVA+  NISGGHVNPAVTFG  +GG+++++  + YW+AQLLG++ A+ LL++ TGG+  P                    TFGL+Y  YAT  DPK+G +GTIAP+A+GF++GAN+LA GPF G  MNP R FGPA+
Sbjct:   14 GRSEDATHPDTIRAAISEFIATAIFVFAAEGSVLSLGKMYHDMST-AGGLVAVALAHALALAVAVAVAVNISGGHVNPAVTFGALVGGRVSLVRAVLYWVAQLLGAVAATLLLRLATGGMRPPGFALASGVGDWHAVLLEAVMTFGLMYAYYATVIDPKRGHVGTIAPLAVGFLLGANVLAGGPFDGAGMNPARVFGPAL 212          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: TIP41_ARATH (Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.738e-49
Identity = 102/210 (48.57%), Postives = 128/210 (60.95%), Query Frame = 1
Query:  103 IAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNFPD 732
            I  G   ++      KA + EFI+T LFVFAGVGSA+A + +  +  +   GL A+A+ H F + V ++ G +ISGGH+NPAVT GL LGG I++     YWI QLL S  A FLL  +TGG+  P H                  TF L++TVYAT  DPKKGSL    P+  GF+VGANILA G FSG SMNP RSFGPA+ SGN+ D
Sbjct:    4 IELGHHSEAAKPDCIKALIVEFITTFLFVFAGVGSAMATDSLVGNTLV---GLFAVAVAHAFVVAVMISAG-HISGGHLNPAVTLGLLLGGHISVFRAFLYWIDQLLASSAACFLLSYLTGGMGTPVHTLASGVSYTQGIIWEIILTFSLLFTVYATIVDPKKGSLDGFGPLLTGFVVGANILAGGAFSGASMNPARSFGPALVSGNWTD 209          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: TIP32_MAIZE (Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.964e-49
Identity = 95/202 (47.03%), Postives = 129/202 (63.86%), Query Frame = 1
Query:  112 GRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAAL--DPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAV 711
            GR +D+    + +A ++EFI+T +FVFA  GS ++  KM  D +      GLVA+A+ H   L VAVA+  N+SGGHVNPAVTFG  +GG+++++  + YW AQLLG++ A+ LL++ TGG   P                    TFG VY  YAT  DPK+G LGTIAP+A+GF++GAN+LA GPF G  MNP R FGPA+
Sbjct:   16 GRSEDATHPDTIRAAISEFIATAIFVFAAEGSVLSLGKMYHDHSTISTAGGLVAVALAHALGLAVAVAVAVNVSGGHVNPAVTFGALVGGRVSLVRAVLYWAAQLLGAVAATLLLRLATGGARPPGFALASGVGDGHAVLLEAVMTFGFVYAYYATVVDPKRGHLGTIAPLAVGFLLGANVLAGGPFDGAGMNPARVFGPAL 217          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: TIP51_ORYSJ (Probable aquaporin TIP5-1 OS=Oryza sativa subsp. japonica GN=TIP5;1 PE=2 SV=3)

HSP 1 Score: 174.481 bits (441), Expect = 5.415e-43
Identity = 94/207 (45.41%), Postives = 121/207 (58.45%), Query Frame = 1
Query:  130 FSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLG--------TIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNF 726
            FS  + +AY AEF ST LFVF  VGS I+   +T D   D S L+A A+   F LF AV I A++SGGHVNPAVTF  A+GG IT+ + IFYW +Q+LGS  A  +L  ++ G AVPT                   TF +VYTV+  A DP+ G  G         +  + +G + GA +LAAG  +G SMNP RSFGPAV SG++
Sbjct:   12 FSPPALRAYFAEFFSTFLFVFIAVGSTISARMLTPDETSDASSLMATAVAQAFGLFAAVFIAADVSGGHVNPAVTFAYAIGGHITVPSAIFYWASQMLGSTFACLVLHYISAGQAVPTTRIAVEMTGFGAGILEGVLTFMVVYTVH-VAGDPRGGGFGGRKGPAATALGALVVGAVTGACVLAAGSLTGASMNPARSFGPAVVSGHY 217          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: TIP32_ORYSJ (Probable aquaporin TIP3-2 OS=Oryza sativa subsp. japonica GN=TIP3-2 PE=2 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 2.058e-42
Identity = 91/196 (46.43%), Postives = 119/196 (60.71%), Query Frame = 1
Query:  139 GSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNF 726
            G+ +A L+EF++T +FVFA  GS     KM  D      GL+ +A+ H  AL  AVA+  N SGGHVNPAVTFG+ +G +I+      YW AQLLG+++A  LL++ +GG+                       TFGLVYTVYATA D + G  G IAP+AIG + GANILA GPF G +MNP R+FGPA+   N+
Sbjct:   26 GATRAALSEFVATAVFVFAAEGSVYGLWKMYRDTGT-LGGLLVVAVAHALALAAAVAVSRNASGGHVNPAVTFGVLVGRRISFARAALYWAAQLLGAVLAVLLLRLASGGMRPMGFTLGHRIHERHALLLEVVMTFGLVYTVYATAVDRRSGG-GDIAPLAIGLVAGANILAGGPFDGAAMNPARAFGPALVGWNW 219          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: TIP43_ORYSJ (Probable aquaporin TIP4-3 OS=Oryza sativa subsp. japonica GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.584e-42
Identity = 94/211 (44.55%), Postives = 126/211 (59.72%), Query Frame = 1
Query:  103 IAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGG-LAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNFPD 732
            +A G   ++   G  +A +AE + T LFVF+GVGSA+A  K+         GL A+A  H   + V V+ G ++SGGH+NPAVT GLA GG IT+     Y  AQLLGS +A  LL  +TGG  AVP H                  TF L++ VYAT  D ++ ++G + P+ +G +VGANILA GP+SG SMNP RSFGPA+A+G + D
Sbjct:    4 LALGHHREATDPGCLRAVVAELLLTFLFVFSGVGSAMAAAKLGGGGDTI-MGLTAVAAAHALVVAVMVSAGLHVSGGHINPAVTLGLAAGGHITLFRSALYAAAQLLGSSLACLLLAALTGGEEAVPVHAPAPGVGAARAVAMEAVLTFSLLFAVYATVVD-RRRAVGALGPLLVGLVVGANILAGGPYSGASMNPARSFGPALAAGEWAD 212          
The following BLAST results are available for this feature:
BLAST of FC875627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
TIP31_ARATH4.419e-5349.54Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1... [more]
TIP32_ARATH1.286e-5250.24Probable aquaporin TIP3-2 OS=Arabidopsis thaliana ... [more]
TIP31_ORYSJ1.422e-5148.00Probable aquaporin TIP3-1 OS=Oryza sativa subsp. j... [more]
TIPA_PHAVU2.425e-5148.31Probable aquaporin TIP-type alpha OS=Phaseolus vul... [more]
TIP31_MAIZE1.203e-5048.00Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1[more]
TIP41_ARATH1.738e-4948.57Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1... [more]
TIP32_MAIZE2.964e-4947.03Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1[more]
TIP51_ORYSJ5.415e-4345.41Probable aquaporin TIP5-1 OS=Oryza sativa subsp. j... [more]
TIP32_ORYSJ2.058e-4246.43Probable aquaporin TIP3-2 OS=Oryza sativa subsp. j... [more]
TIP43_ORYSJ4.584e-4244.55Probable aquaporin TIP4-3 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionC31401A08EF CTVClemen1 Citrus clementina cDNA clone C31401A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875627 ID=FC875627; Name=FC875627; organism=Citrus clementina; type=EST; length=743bp
GCTCGACCGAGATAAACCTTATCTTCTTCTTCTTCTTAAGAAAGACTCGA
GAGAGTTTTTTTTTTCCCCTATTCTCTAGCTCTTTCTTGATCAACAATGG
CTATTGCCTTCGGCCGCTTCGATGATTCTTTCAGCTTAGGCTCCTTCAAG
GCCTATCTTGCTGAGTTTATCTCAACTTTGCTCTTTGTTTTCGCCGGCGT
TGGCTCGGCCATTGCTTTCAACAAGATGACAGCAGATGCAGCACTTGATC
CATCAGGGCTAGTAGCCATCGCTATTTGCCATGGATTTGCTCTATTTGTC
GCAGTTGCAATTGGTGCTAACATCTCAGGTGGCCACGTCAACCCAGCCGT
CACCTTTGGATTGGCTCTTGGTGGCCAAATCACCATCCTCACTGGCATCT
TCTACTGGATTGCCCAACTTCTTGGCTCTATTGTTGCCAGCTTCCTCCTC
AAAGTTGTCACTGGAGGCTTGGCAGTTCCTACCCACAATGTTGCTGCTGG
AGTTGGAGCCATTGAAGGAGTTGTGATGGAGATCATCATCACATTTGGTT
TGGTCTACACGGTCTATGCCACGGCAGCTGACCCCAAGAAGGGATCATTG
GGCACCATTGCACCCATTGCCATTGGTTTCATTGTCGGTGCCAACATCCT
GGCCGCCGGCCCATTCTCCGGTGGTTCCATGAACCCGGNCCGTTCCTTCG
GGCCTGCCGTTGCCAGCGGCAACTTCCCAGACACTGGATCTAC
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