FC875627

Overview
NameFC875627
Unique NameFC875627
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875627_ssr22 microsatellite FC875627_ssr22:22..36. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig989 contig Ccv1_Contig989:2..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: AQP1_BOVIN (Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 1.387e-22
Identity = 71/204 (34.80%), Postives = 106/204 (51.96%), Query Frame = 1
Query:  145 FKAYLAEFISTLLFVFAGVGSAIAFN-----KMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGL---AVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNFPD 732
            ++A +AEF++ +LF+F  +GSA+ F+       T  A  D    V +++  G ++        +ISG H+NPAVT GL L  QI++L  I Y IAQ +G+IVA+ +L  +T  L   ++  +                  T  LV  V AT  D ++  LG   P+AIGF V    L A  ++G  +NP RSFG +V + NF D
Sbjct:   11 WRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDN---VKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLAT-TDRRRRDLGGSGPLAIGFSVALGHLLAIDYTGCGINPARSFGSSVITHNFQD 210          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: MIP_RANPI (Lens fiber major intrinsic protein OS=Rana pipiens PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.811e-22
Identity = 68/203 (33.50%), Postives = 105/203 (51.72%), Query Frame = 1
Query:  133 SLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNF 726
            S   ++A  AEF  T+ +VF G+G+++ +       A  P+ ++ IA+  G  L   V    ++SG H+NPAVTF   +G Q+++   IFY  AQLLG++  + +L  VT     G LA+ T                   T   V  ++AT  + + G LG+++ +AIGF +    L    ++G SMNP RSF PAV + NF
Sbjct:    6 SFSFWRAVFAEFFGTMFYVFFGLGASLKW-------AAGPANVLVIALAFGLVLATMVQSIGHVSGAHINPAVTFAFLIGSQMSLFRAIFYIAAQLLGAVAGAAVLYGVTPAAIRGNLALNT--LHPGVSLGQATTVEIFLTLQFVLCIFATYDERRNGRLGSVS-LAIGFSLTLGHLFGLYYTGASMNPARSFAPAVLTRNF 198          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: AQP2_RAT (Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.811e-22
Identity = 73/206 (35.44%), Postives = 107/206 (51.94%), Query Frame = 1
Query:  133 SLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAV-PTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNFPD 732
            S+   +A LAEF++TLLFVF G+GSA+ +       A  P  ++ IA+  G  + + V    ++SG H+NPAVT    +G  ++ L   FY  AQLLG++  + +L  +T     G LAV   HN                 T  LV  ++A+  + +  +LG+ A ++IGF V    L    F+G SMNP RS  PAV +G F D
Sbjct:    6 SIAFSRAVLAEFLATLLFVFFGLGSALQW-------ASSPPSVLQIAVAFGLGIGILVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAILHEITPVEIRGDLAVNALHN---NATAGQAVTVELFLTMQLVLCIFASTDERRGDNLGSPA-LSIGFSVTLGHLLGIYFTGCSMNPARSLAPAVVTGKFDD 200          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: MIP_SHEEP (Lens fiber major intrinsic protein OS=Ovis aries GN=MIP PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.365e-22
Identity = 69/203 (33.99%), Postives = 106/203 (52.22%), Query Frame = 1
Query:  133 SLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNF 726
            S   ++A  AEF +TL +VF G+G+++ +       A  P  ++ +A+  G AL   V    +ISG HVNPAVTF   +G Q+++L  I Y +AQLLG++  + +L  VT     G LA+ T                   T   V  ++AT  + + G LG++A +A+GF +    L    ++G  MNP RSF PA+ + NF
Sbjct:    6 SASFWRAIFAEFFATLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNT--LHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNF 198          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: AQP2_MOUSE (Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 2.365e-22
Identity = 73/206 (35.44%), Postives = 106/206 (51.46%), Query Frame = 1
Query:  133 SLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAV-PTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNFPD 732
            S+   +A LAEF++TLLFVF G+GSA+ +       A  P  ++ IA+  G  +   V    ++SG H+NPAVT    +G  ++ L   FY  AQLLG++  + +L  +T     G LAV   HN                 T  LV  ++A+  + +  +LG+ A ++IGF V    L    F+G SMNP RS  PAV +G F D
Sbjct:    6 SIAFSRAVLAEFLATLLFVFFGLGSALQW-------ASSPPSVLQIAVAFGLGIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAILHEITPVEIRGDLAVNALHN---NATAGQAVTVELFLTMQLVLCIFASTDERRSDNLGSPA-LSIGFSVTLGHLLGIYFTGCSMNPARSLAPAVVTGKFDD 200          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: MIP_RABIT (Lens fiber major intrinsic protein OS=Oryctolagus cuniculus GN=MIP PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.034e-22
Identity = 69/203 (33.99%), Postives = 105/203 (51.72%), Query Frame = 1
Query:  133 SLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNF 726
            S   ++A  AEF +TL +VF G+G+++ +       A  P  ++ +A+  G AL   V    +ISG HVNPAVTF   +G Q+++L  I Y  AQLLG++  + +L  VT     G LA+ T                   T   V  ++AT  + + G LG++A +A+GF +    L    ++G  MNP RSF PA+ + NF
Sbjct:    6 SASFWRAIFAEFFATLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMAAQLLGAVAGAAVLYSVTPAAVRGNLALNT--LHPGVSLGQATTVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNF 198          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: AQP_CICVR (Aquaporin AQPcic OS=Cicadella viridis GN=AQP PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.034e-22
Identity = 72/194 (37.11%), Postives = 97/194 (50.00%), Query Frame = 1
Query:  145 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAV 711
            ++   AE I TLL V  G GS         D       +V IA+  GF +   V    ++SG H+NPAVT GL + G I+IL  IFY I Q +G+I  S +LKV+T     G L +   +                 TF L+  V +   D +K +LG  AP+A+G  +    LAA  ++G SMNP RSFGPAV
Sbjct:   26 WRCLAAELIGTLLLVLIGTGSCTGVQISEGDV------VVRIALTFGFIIATMVQCIGHVSGCHINPAVTCGLLVTGHISILKAIFYIIVQCVGAIAGSAILKVITPAEFRGTLCMT--SLAPGVTPPMGFLVEACITFVLILLVQSVCDDRRK-NLGNAAPVAVGLAITCCHLAAIKYTGSSMNPARSFGPAV 210          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: AQP1_PONAB (Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3)

HSP 1 Score: 105.145 bits (261), Expect = 4.034e-22
Identity = 68/197 (34.52%), Postives = 101/197 (51.27%), Query Frame = 1
Query:  145 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGL---AVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNF 726
            ++A +AEF++  LFVF  +GSA+ F     +        V +++  G ++        +ISG H+NPAVT GL L  QI+I   + Y IAQ +G+IVA+ +L  +T  L   ++  ++                 T  LV  V AT  D ++  LG  AP+AIG  V    L A  ++G  +NP RSFG AV + NF
Sbjct:   11 WRAVVAEFLAMTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLPGNSLGRNDLADGVNSGQGLGIEIIGTLQLVLCVLAT-TDRRRRDLGGSAPLAIGLSVALGHLLAIDYTGCGINPARSFGSAVITHNF 206          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: MIP_BOVIN (Lens fiber major intrinsic protein OS=Bos taurus GN=MIP PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.269e-22
Identity = 68/203 (33.50%), Postives = 106/203 (52.22%), Query Frame = 1
Query:  133 SLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNF 726
            S   ++A  AEF ++L +VF G+G+++ +       A  P  ++ +A+  G AL   V    +ISG HVNPAVTF   +G Q+++L  I Y +AQLLG++  + +L  VT     G LA+ T                   T   V  ++AT  + + G LG++A +A+GF +    L    ++G  MNP RSF PA+ + NF
Sbjct:    6 SASFWRAICAEFFASLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNT--LHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNF 198          
BLAST of FC875627 vs. ExPASy Swiss-Prot
Match: AQP2_BOVIN (Aquaporin-2 OS=Bos taurus GN=AQP2 PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 8.988e-22
Identity = 72/205 (35.12%), Postives = 108/205 (52.68%), Query Frame = 1
Query:  133 SLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPXRSFGPAVASGNFPD 732
            S+   +A LAEF++TLLFVF G+GSA+ + +        PS ++ IA+  G A+   V    ++SG H+NPAVT    +G  ++ L  +FY  AQLLG++  + LL  +T     G LAV   N                 T  LV  ++A+  + +  ++GT A ++IGF V    L    ++G SMNP RS  PA+ +G F D
Sbjct:    6 SIAFSRAVLAEFLATLLFVFFGLGSALNWPQAL------PS-VLQIAMAFGLAIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAVFYVAAQLLGAVAGAALLHEITPPAIRGDLAVNALN--NNSTAGQAVTVELFLTLQLVLCIFASTDERRGDNVGTPA-LSIGFSVALGHLLGIHYTGCSMNPARSLAPAIVTGKFDD 200          
The following BLAST results are available for this feature:
BLAST of FC875627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
AQP1_BOVIN1.387e-2234.80Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3[more]
MIP_RANPI1.811e-2233.50Lens fiber major intrinsic protein OS=Rana pipiens... [more]
AQP2_RAT1.811e-2235.44Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1[more]
MIP_SHEEP2.365e-2233.99Lens fiber major intrinsic protein OS=Ovis aries G... [more]
AQP2_MOUSE2.365e-2235.44Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2[more]
MIP_RABIT4.034e-2233.99Lens fiber major intrinsic protein OS=Oryctolagus ... [more]
AQP_CICVR4.034e-2237.11Aquaporin AQPcic OS=Cicadella viridis GN=AQP PE=1 ... [more]
AQP1_PONAB4.034e-2234.52Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3[more]
MIP_BOVIN5.269e-2233.50Lens fiber major intrinsic protein OS=Bos taurus G... [more]
AQP2_BOVIN8.988e-2235.12Aquaporin-2 OS=Bos taurus GN=AQP2 PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC31401A08EF CTVClemen1 Citrus clementina cDNA clone C31401A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875627 ID=FC875627; Name=FC875627; organism=Citrus clementina; type=EST; length=743bp
GCTCGACCGAGATAAACCTTATCTTCTTCTTCTTCTTAAGAAAGACTCGA
GAGAGTTTTTTTTTTCCCCTATTCTCTAGCTCTTTCTTGATCAACAATGG
CTATTGCCTTCGGCCGCTTCGATGATTCTTTCAGCTTAGGCTCCTTCAAG
GCCTATCTTGCTGAGTTTATCTCAACTTTGCTCTTTGTTTTCGCCGGCGT
TGGCTCGGCCATTGCTTTCAACAAGATGACAGCAGATGCAGCACTTGATC
CATCAGGGCTAGTAGCCATCGCTATTTGCCATGGATTTGCTCTATTTGTC
GCAGTTGCAATTGGTGCTAACATCTCAGGTGGCCACGTCAACCCAGCCGT
CACCTTTGGATTGGCTCTTGGTGGCCAAATCACCATCCTCACTGGCATCT
TCTACTGGATTGCCCAACTTCTTGGCTCTATTGTTGCCAGCTTCCTCCTC
AAAGTTGTCACTGGAGGCTTGGCAGTTCCTACCCACAATGTTGCTGCTGG
AGTTGGAGCCATTGAAGGAGTTGTGATGGAGATCATCATCACATTTGGTT
TGGTCTACACGGTCTATGCCACGGCAGCTGACCCCAAGAAGGGATCATTG
GGCACCATTGCACCCATTGCCATTGGTTTCATTGTCGGTGCCAACATCCT
GGCCGCCGGCCCATTCTCCGGTGGTTCCATGAACCCGGNCCGTTCCTTCG
GGCCTGCCGTTGCCAGCGGCAACTTCCCAGACACTGGATCTAC
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