FC875628

Overview
NameFC875628
Unique NameFC875628
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10281 contig Ccv1_Contig10281:1..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC875628 vs. ExPASy Swiss-Prot
Match: GSTT1_LUCCU (Glutathione S-transferase 1-1 OS=Lucilia cuprina GN=GST1 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 50/142 (35.21%), Postives = 72/142 (50.70%), Query Frame = 2 
Query:  122 GLEYEYKAVNLVKGEQFSPEFLEINPIGYVPALVDGDFVVSDSFAILMYLEEKY-PQPPLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLCL 544
            G+E   K +NL  GE   PEFL+INP   +P LVDGDF + +S AI++YL EKY     L P   K++A+  Q       ++           I  KA AD  +++ K  +   F  L   L+ +  +Y  GD + +ADL L
Sbjct:   23 GIELNKKLLNLQAGEHLKPEFLKINPQHTIPTLVDGDFALWESRAIMVYLVEKYGKNDSLFPKCPKKRAVINQRLYFDMGTLYKSFADYYYPQIFAKAPADP-ELYKK--MEAAFDFLNTFLEGH--QYVAGDSLTVADLAL 159
The following BLAST results are available for this feature:
BLAST of FC875628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
GSTT1_LUCCU8.306e-1135.21Glutathione S-transferase 1-1 OS=Lucilia cuprina G... [more]

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Properties
Property NameValue
Genbank descriptionC31401A09EF CTVClemen1 Citrus clementina cDNA clone C31401A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875628 ID=FC875628; Name=FC875628; organism=Citrus clementina; type=EST; length=696bp
GAATCTGCAGTGCTTGTGTAGTCTGGTTAGAGACAGAACCTGTTGATAAA
ACATGCTGAAACTGTTTTCATACTGGAGGAGTTCATGCTCACATCGTGTC
AGAATTGGTCTCAACTTGAAAGGGTTAGAATATGAGTACAAAGCAGTTAA
CTTGGTGAAAGGAGAGCAATTCAGTCCTGAGTTTTTGGAGATCAACCCTA
TTGGCTACGTGCCGGCTTTGGTTGATGGAGATTTTGTTGTATCTGATTCT
TTTGCCATTTTAATGTACCTGGAAGAGAAGTATCCTCAGCCTCCATTGTT
GCCTTCTGATCTTAAGAGAAAAGCTATCAATTATCAGGCTGCAAATATTG
TTTCCTCGAGCATACAGCCTCTTCAGAATCTTGCTGTAGTGAAGTACATT
GAGGAAAAAGCTGGTGCAGATGAGAGAGACATCTGGGCTAAAACTCACAT
TGGAAAAGGCTTTGCGGCACTTGAGAAGCTGCTAAAAGACTATGCTGGGA
AATATGCAACTGGAGATGAAGTTTTCCTGGCAGATTTGTGTCTGGCACCA
CAGCTTTATGCAGCGGTCAACAGGTTCAACCTTGACATGACCCAATTCCC
TCTTTTGCTGAGGTTGCATGAGGCATACAGCAAGCTACCGGCATTTCAAA
ATGCTGTACCAGAAAAACAACCGGATGCCCCTTCATCATGAAGTAT
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