FC875637

Overview
NameFC875637
Unique NameFC875637
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10285 contig Ccv1_Contig10285:1..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875637 vs. ExPASy Swiss-Prot
Match: GSTX3_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.147e-37
Identity = 91/207 (43.96%), Postives = 118/207 (57.00%), Query Frame = 3
Query:   69 EVVLLDFWPSMFGIRVRIALAEKGVKYEYKEEDLKNKSPLLLQMNPVHKKIPVLIHNGRPFCESPIIVQYIDEVWKDKAPLLPSDPYQRAQARFWVDFIDKKMYDSLRKTWTTKGXXXXXXXXXXXXVLKTLEGQLGDKPFFGGDNFGYVDLSLIPFYCWFYTYET-CGKFNVEAE-CPKFIAWVKRCLQRETVAQALPDGKKVFEF 683
            EV LL FW S F  RV  AL  KGVKYEY EED  NKS LLLQ NPVHKK+PVLIHNG+P  ES +I++YIDE ++  + +LP DPY RA ARFW  F+  K+  ++  T+  KG            +LK L+ +L DK FF GD FG+ D++      W   +E   G   V +E  P F  W    +    V ++LP   ++  F
Sbjct:    3 EVKLLGFWYSPFTHRVEWALKLKGVKYEYIEEDRDNKSSLLLQSNPVHKKVPVLIHNGKPIVESMVILEYIDETFEGPS-ILPKDPYDRALARFWSKFLGDKV-AAVVNTFFRKGEEQEKGKEEVYEMLKVLDNELKDKKFFVGDKFGFADIAANLVGFWLGVFEEGYGVVLVTSEKFPNFSRWRDEYINCSQVKESLPSRDELLAF 207          
BLAST of FC875637 vs. ExPASy Swiss-Prot
Match: GSTU6_ORYSJ (Probable glutathione S-transferase GSTU6 OS=Oryza sativa subsp. japonica GN=GSTU6 PE=2 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.321e-35
Identity = 91/224 (40.62%), Postives = 121/224 (54.02%), Query Frame = 3
Query:   63 ANEVVLLDFWPSMFGIRVRIALAEKGVKYEYKEEDLKNKSPLLLQMNPVHKKIPVLIHNGRPFCESPIIVQYIDEVWKDKA----PLLPSDPYQRAQARFWVDFIDKKMYDSLRKTW------TTKGXXXXXXXXXXXXVLKTLEGQLGD----KPFFGGDNFGYVDLSLIPFYCWFYTYE-TCGKFNVE-AECPKFIAWVKRCLQRETVAQALP-DGKKVFEF 683
            + E+ LL  W S + IRVR+ L  K + YEY EE+L +KS LLL  NPVHK +PVL+H GRP  ES +IVQYIDEVW   A     ++PSDPY+RA ARFW  ++D    D +R  W      +                L+TLEG  G+    KPFFGGD  G+VD+ L  +  WF   +   G+  ++ A  P   AW +R    +     +P D  K+ EF
Sbjct:    4 SGELKLLGVWSSPYAIRVRVVLNLKSLPYEYVEENLGDKSDLLLASNPVHKSVPVLLHAGRPVNESQVIVQYIDEVWPGGAGGRPSVMPSDPYERAVARFWAAYVD----DKVRPAWLAILFGSKTEEERAAAVAQAVAALETLEGAFGECSKGKPFFGGDGVGFVDVVLGGYLGWFTAIDKLIGRRLIDPARTPALAAWEERFRATDAAKGVVPDDADKLLEF 223          
BLAST of FC875637 vs. ExPASy Swiss-Prot
Match: GSTXA_ARATH (Glutathione S-transferase 103-1A OS=Arabidopsis thaliana GN=103-1A PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.597e-33
Identity = 85/215 (39.53%), Postives = 125/215 (58.14%), Query Frame = 3
Query:   69 EVVLLDFWPSMFGIRVRIALAEKGVKYEYKEEDLKNKSPLLLQMNPVHKKIPVLIHNGRPFCESPIIVQYIDEVWKDKAPLLPSDPYQRAQARFWVDFIDKKM----YDSLRKTWTTKGXXXXXXXXXXXXVLKTLEGQLGDKPFFGGDNFGYVDL---SLIPFYCWFYTYETCG-KFNVEAECPKFIAWVKRCLQRETVAQALPDGKKVFEFVS 689
            EV LL  W S F  RV +AL  KG+ YEY EE L+NKSPLLL +NP+HKK+PVL+HNG+   ES +I++YIDE W    P+LP DPY+R++ARF+   +D+++    + S+ +    KG            ++  LE +L  K +FGG   G++D    SLIPF C    +E  G +   E + P+F  WV+   + E V   +P  ++  E ++
Sbjct:    6 EVKLLGIWASPFSRRVEMALKLKGIPYEYVEEILENKSPLLLALNPIHKKVPVLVHNGKTILESHVILEYIDETWPQN-PILPQDPYERSKARFFAKLVDEQIMNVGFISMARA-DEKG--REVLAEQVRELIMYLEKELVGKDYFGGKTVGFLDFVAGSLIPF-CLERGWEGIGLEVITEEKFPEFKRWVRNLEKVEIVKDCVPPREEHVEHMN 215          
BLAST of FC875637 vs. ExPASy Swiss-Prot
Match: GSTX1_SOLTU (Probable glutathione S-transferase OS=Solanum tuberosum GN=PRP1 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.047e-32
Identity = 75/152 (49.34%), Postives = 99/152 (65.13%), Query Frame = 3
Query:   69 EVVLLDFWPSMFGIRVRIALAEKGVKYEYKEEDLKNKSPLLLQMNPVHKKIPVLIHNGRPFCESPIIVQYIDEVWKDKAPLLPSDPYQRAQARFWVDFIDKKMYDSLRKTWTTKGXXXXXXXXXXXXVLKTLEGQLGDKPFFGGDNFGYVDL 524
            EV LL    S F  RV  AL  KGVKYE+ EEDL+NKSPLLLQ NP+HKKIPVLIHNG+  CES +I++YIDE ++  + +LP DPY RA ARFW  +++ K   ++ K++ +KG            +LK L+ +  DK  F GD FG+ D+
Sbjct:    3 EVKLLGLRYSPFSHRVEWALKIKGVKYEFIEEDLQNKSPLLLQSNPIHKKIPVLIHNGKCICESMVILEYIDEAFEGPS-ILPKDPYDRALARFWAKYVEDK-GAAVWKSFFSKGEEQEKAKEEAYEMLKILDNEFKDKKCFVGDKFGFADI 152          
BLAST of FC875637 vs. ExPASy Swiss-Prot
Match: GSTX2_MAIZE (Probable glutathione S-transferase BZ2 OS=Zea mays GN=BZ2 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.043e-19
Identity = 72/216 (33.33%), Postives = 103/216 (47.69%), Query Frame = 3
Query:   96 SMFGIRVRIALAEKGVKYEYKEEDL-KNKSPLLLQMNPVHKKIPVLI-HNGRPFCESPIIVQYIDEVWKDKAP------LLPSDPYQRAQARFWVDFIDKKMYD-----SLRKTWTTKGXXXXXXXXXXXXVLKTLEGQLGDKPFFGGDNF--GYVDLSLIPFYCWFYTYETCGKFN----VEAEC-PKFIAWVKRCLQRETVAQALPDGKKVFEF 683
            S F  R R+AL  +GV YE  +E L   KS  LL  NPV+ KIPVL+  +GR  CES +IVQYI++V ++         LLP DPY+RA  RFW  FID K +      SL  T   +             + +  + +   + FF G +   G +DL+L    C+      C + +    ++A   P    W +R        + LPD +KV +F
Sbjct:    9 SPFTARARLALDLRGVAYELLDEPLGPKKSDRLLAANPVYGKIPVLLLPDGRAICESAVIVQYIEDVARESGGAEAGSLLLPDDPYERAMHRFWTAFIDDKFWPALDAVSLAPTPGARAQAAEDTRAALSLLEEAFKDRSNGRAFFSGGDAAPGLLDLAL---GCFLPALRACERLHGLSLIDASATPLLDGWSQRFAAHPAAKRVLPDTEKVVQF 221          
BLAST of FC875637 vs. ExPASy Swiss-Prot
Match: MAAI_CAEEL (Probable maleylacetoacetate isomerase OS=Caenorhabditis elegans GN=gst-42 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.870e-11
Identity = 41/93 (44.09%), Postives = 54/93 (58.06%), Query Frame = 3
Query:   75 VLLDFWPSMFGIRVRIALAEKGVKYEYKEEDL--KNKSPLLLQMNPVHKKIPVLIHNGRPFCESPIIVQYIDEVWKDKAPLLPSDPYQRAQAR 347
            VL  +W S    RVRIALA K V YEYK  DL  +     L ++NP   K+P  + +G+   ES  I++Y++E   D  PLLP DP +RA AR
Sbjct:    7 VLYSYWRSSCSWRVRIALALKNVDYEYKTVDLLSEEAKSKLKEINPA-AKVPTFVVDGQVITESLAIIEYLEETHPD-VPLLPKDPIKRAHAR 97          
BLAST of FC875637 vs. ExPASy Swiss-Prot
Match: SSPA_SHIFL (Stringent starvation protein A OS=Shigella flexneri GN=sspA PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.601e-11
Identity = 43/146 (29.45%), Postives = 68/146 (46.58%), Query Frame = 3
Query:   99 MFGIRVRIALAEKGVKYEYKEEDLKNKSPLLLQMNPVHKKIPVLIHNGRPFCESPIIVQYIDEVWKDKAPLLPSDPYQRAQARFWVDFIDKKMYDSLRKTWTTKGXXXXXXXXXXXXVLKTLEGQLGDKPFFGGDNFGYVDLSLIP 536
            ++  +VRI LAEKGV +E +  +  N    L+ +NP ++ +P L+       ES II++Y+DE +    PL+P  P  R ++R ++  I+K  Y  +                     L  +    G KP+F  D F  VD  L P
Sbjct:   20 IYSHQVRIVLAEKGVSFEIEHVEKDNPPQDLIDLNP-NQSVPTLVDRELTLWESRIIMEYLDERF-PHPPLMPVYPVARGESRLYMHRIEKDWYTLMNTIINGSASEADAARKQLREELLAIAPVFGQKPYFLSDEFSLVDCYLAP 163          
BLAST of FC875637 vs. ExPASy Swiss-Prot
Match: SSPA_ECOLI (Stringent starvation protein A OS=Escherichia coli (strain K12) GN=sspA PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.601e-11
Identity = 43/146 (29.45%), Postives = 68/146 (46.58%), Query Frame = 3
Query:   99 MFGIRVRIALAEKGVKYEYKEEDLKNKSPLLLQMNPVHKKIPVLIHNGRPFCESPIIVQYIDEVWKDKAPLLPSDPYQRAQARFWVDFIDKKMYDSLRKTWTTKGXXXXXXXXXXXXVLKTLEGQLGDKPFFGGDNFGYVDLSLIP 536
            ++  +VRI LAEKGV +E +  +  N    L+ +NP ++ +P L+       ES II++Y+DE +    PL+P  P  R ++R ++  I+K  Y  +                     L  +    G KP+F  D F  VD  L P
Sbjct:   20 IYSHQVRIVLAEKGVSFEIEHVEKDNPPQDLIDLNP-NQSVPTLVDRELTLWESRIIMEYLDERF-PHPPLMPVYPVARGESRLYMHRIEKDWYTLMNTIINGSASEADAARKQLREELLAIAPVFGQKPYFLSDEFSLVDCYLAP 163          
BLAST of FC875637 vs. ExPASy Swiss-Prot
Match: SSPA_ECOL6 (Stringent starvation protein A OS=Escherichia coli O6 GN=sspA PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.601e-11
Identity = 43/146 (29.45%), Postives = 68/146 (46.58%), Query Frame = 3
Query:   99 MFGIRVRIALAEKGVKYEYKEEDLKNKSPLLLQMNPVHKKIPVLIHNGRPFCESPIIVQYIDEVWKDKAPLLPSDPYQRAQARFWVDFIDKKMYDSLRKTWTTKGXXXXXXXXXXXXVLKTLEGQLGDKPFFGGDNFGYVDLSLIP 536
            ++  +VRI LAEKGV +E +  +  N    L+ +NP ++ +P L+       ES II++Y+DE +    PL+P  P  R ++R ++  I+K  Y  +                     L  +    G KP+F  D F  VD  L P
Sbjct:   20 IYSHQVRIVLAEKGVSFEIEHVEKDNPPQDLIDLNP-NQSVPTLVDRELTLWESRIIMEYLDERF-PHPPLMPVYPVARGESRLYMHRIEKDWYTLMNTIINGSASEADAARKQLREELLAIAPVFGQKPYFLSDEFSLVDCYLAP 163          
BLAST of FC875637 vs. ExPASy Swiss-Prot
Match: SSPA_ECO57 (Stringent starvation protein A OS=Escherichia coli O157:H7 GN=sspA PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.601e-11
Identity = 43/146 (29.45%), Postives = 68/146 (46.58%), Query Frame = 3
Query:   99 MFGIRVRIALAEKGVKYEYKEEDLKNKSPLLLQMNPVHKKIPVLIHNGRPFCESPIIVQYIDEVWKDKAPLLPSDPYQRAQARFWVDFIDKKMYDSLRKTWTTKGXXXXXXXXXXXXVLKTLEGQLGDKPFFGGDNFGYVDLSLIP 536
            ++  +VRI LAEKGV +E +  +  N    L+ +NP ++ +P L+       ES II++Y+DE +    PL+P  P  R ++R ++  I+K  Y  +                     L  +    G KP+F  D F  VD  L P
Sbjct:   20 IYSHQVRIVLAEKGVSFEIEHVEKDNPPQDLIDLNP-NQSVPTLVDRELTLWESRIIMEYLDERF-PHPPLMPVYPVARGESRLYMHRIEKDWYTLMNTIINGSASEADAARKQLREELLAIAPVFGQKPYFLSDEFSLVDCYLAP 163          
The following BLAST results are available for this feature:
BLAST of FC875637 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
GSTX3_TOBAC9.147e-3743.96Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTU6_ORYSJ1.321e-3540.63Probable glutathione S-transferase GSTU6 OS=Oryza ... [more]
GSTXA_ARATH3.597e-3339.53Glutathione S-transferase 103-1A OS=Arabidopsis th... [more]
GSTX1_SOLTU1.047e-3249.34Probable glutathione S-transferase OS=Solanum tube... [more]
GSTX2_MAIZE5.043e-1933.33Probable glutathione S-transferase BZ2 OS=Zea mays... [more]
MAAI_CAEEL3.870e-1144.09Probable maleylacetoacetate isomerase OS=Caenorhab... [more]
SSPA_SHIFL6.601e-1129.45Stringent starvation protein A OS=Shigella flexner... [more]
SSPA_ECOLI6.601e-1129.45Stringent starvation protein A OS=Escherichia coli... [more]
SSPA_ECOL66.601e-1129.45Stringent starvation protein A OS=Escherichia coli... [more]
SSPA_ECO576.601e-1129.45Stringent starvation protein A OS=Escherichia coli... [more]

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Properties
Property NameValue
Genbank descriptionC31401B08EF CTVClemen1 Citrus clementina cDNA clone C31401B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875637 ID=FC875637; Name=FC875637; organism=Citrus clementina; type=EST; length=715bp
GGGTGTTTGTCTTGTCTTTTCATTTATTCACTCTTGACTCTTAGTAAGCT
TCTGTCACAATGGCGAACGAAGTGGTTCTGTTGGATTTCTGGCCCAGCAT
GTTTGGGATAAGGGTCAGGATTGCTCTGGCGGAGAAAGGCGTCAAGTATG
AGTACAAGGAAGAGGACTTGAAGAACAAGAGCCCCCTGCTTCTGCAGATG
AACCCCGTTCACAAGAAGATCCCGGTTCTCATCCACAACGGCAGACCGTT
CTGTGAGTCACCCATCATTGTTCAGTACATTGATGAAGTGTGGAAGGACA
AGGCTCCATTGCTTCCCTCTGATCCCTACCAGAGAGCTCAAGCTAGGTTC
TGGGTAGATTTCATTGACAAGAAGATGTACGATTCTTTGAGGAAGACATG
GACCACAAAGGGAGAAGAGCAGGAGGCAGCTAAGAAGGAGTTCTTTGAAG
TTCTGAAGACTTTGGAAGGGCAGCTTGGAGACAAGCCTTTCTTCGGAGGA
GACAATTTTGGGTATGTGGATTTAAGTTTGATCCCATTCTATTGTTGGTT
TTACACGTATGAGACATGTGGAAAGTTCAACGTCGAGGCTGAGTGCCCCA
AGTTCATAGCTTGGGTGAAGAGATGCTTGCAGAGGGAGACTGTTGCCCAG
GCACTTCCTGATGGGAAGAAAGTGTTTGAATTTGTTTCNAGCGATGAGAC
AATTTAGGATTGGAG
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