FC875644

Overview
NameFC875644
Unique NameFC875644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length748
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15217 contig Ccv1_Contig15217:3..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875644 vs. ExPASy Swiss-Prot
Match: RL13_CHICK (60S ribosomal protein L13 OS=Gallus gallus GN=RPL13 PE=2 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 6.274e-47
Identity = 95/188 (50.53%), Postives = 123/188 (65.43%), Query Frame = 2
Query:   80 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 643
            N +I   HF K WQ  V TWFNQP                I PRP AGP+RP+V   T++Y+ K+RAGRGF+LEELK AGI K+ A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+PEEL  ATQ+ GP MPI       +   ++++ K+FKA+  LR+ R N R FG
Sbjct:    6 NGMILKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPVAGPIRPIVRCPTVRYHKKVRAGRGFSLEELKLAGINKRFARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSPEELKMATQLSGPVMPIRNVFKREKARVISEEEKNFKAFASLRMARANARLFG 193          
BLAST of FC875644 vs. ExPASy Swiss-Prot
Match: RL13_RAT (60S ribosomal protein L13 OS=Rattus norvegicus GN=Rpl13 PE=1 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.398e-46
Identity = 94/188 (50.00%), Postives = 123/188 (65.43%), Query Frame = 2
Query:   80 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 643
            N +I   HF K WQ  V TWFNQP                I PRP +GP+RP+V   T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MPI       +   +T++ K+FKA+  LR+ R N R FG
Sbjct:    6 NGMILKPHFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKMARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARAITEEEKNFKAFASLRMARANARLFG 193          
BLAST of FC875644 vs. ExPASy Swiss-Prot
Match: RL13_MOUSE (60S ribosomal protein L13 OS=Mus musculus GN=Rpl13 PE=2 SV=3)

HSP 1 Score: 185.652 bits (470), Expect = 2.384e-46
Identity = 94/188 (50.00%), Postives = 123/188 (65.43%), Query Frame = 2
Query:   80 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 643
            N +I   HF K WQ  V TWFNQP                I PRP +GP+RP+V   T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MPI       +   +T++ K+FKA+  LR+ R N R FG
Sbjct:    6 NGMILKPHFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFG 193          
BLAST of FC875644 vs. ExPASy Swiss-Prot
Match: RL13_HUMAN (60S ribosomal protein L13 OS=Homo sapiens GN=RPL13 PE=1 SV=4)

HSP 1 Score: 184.882 bits (468), Expect = 4.067e-46
Identity = 92/188 (48.94%), Postives = 123/188 (65.43%), Query Frame = 2
Query:   80 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 643
            N ++   HF K WQ  V TWFNQP                I PRP +GP+RP+V   T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MP+       +   +T++ K+FKA+  LR+ R N R FG
Sbjct:    6 NGMVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPVRNVYKKEKARVITEEEKNFKAFASLRMARANARLFG 193          
BLAST of FC875644 vs. ExPASy Swiss-Prot
Match: RL13_BOVIN (60S ribosomal protein L13 OS=Bos taurus GN=RPL13 PE=2 SV=3)

HSP 1 Score: 184.882 bits (468), Expect = 4.067e-46
Identity = 95/188 (50.53%), Postives = 122/188 (64.89%), Query Frame = 2
Query:   80 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 643
            N +I   HF K WQ  V TWFNQP                I PRP +GPLRPVV   T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIG+SVD RR+N+  E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MPI       +   +T++ K+FKA+  LR+ R N R FG
Sbjct:    6 NGMILKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPLRPVVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKCTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFG 193          
BLAST of FC875644 vs. ExPASy Swiss-Prot
Match: RL13_SPOFR (60S ribosomal protein L13 OS=Spodoptera frugiperda GN=RpL13 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.545e-45
Identity = 90/180 (50.00%), Postives = 119/180 (66.11%), Query Frame = 2
Query:   74 KHNNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLR 613
            K NN+IPNGHF K WQ +VKTWFNQP                + PRP AGPLRPVV   T++Y+ K+RAGRGFTL E++AAG+    A TIG++VD RR+N+S+E LQ NVQRLK Y+A+L++FP + +K   G++  EE   ATQ++GP MP+    P      +T++ K FKAY  LR
Sbjct:    3 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIKKAKAVAPRPAAGPLRPVVRCPTIRYHTKVRAGRGFTLREIRAAGLNPAFARTIGIAVDPRRRNKSVESLQVNVQRLKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSIARAITEEEKDFKAYQYLR 181          
BLAST of FC875644 vs. ExPASy Swiss-Prot
Match: RL13_CRIGR (60S ribosomal protein L13 OS=Cricetulus griseus GN=RPL13 PE=2 SV=3)

HSP 1 Score: 182.185 bits (461), Expect = 2.636e-45
Identity = 93/188 (49.47%), Postives = 122/188 (64.89%), Query Frame = 2
Query:   80 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 643
            N +I   HF K WQ  V TWFNQP                I PRP +GP+RP+V   T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP M I       +   +T++ K+FKA+  LR+ R N R FG
Sbjct:    6 NGMILKPHFHKDWQRRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMRIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFG 193          
BLAST of FC875644 vs. ExPASy Swiss-Prot
Match: RL13_SCHMA (60S ribosomal protein L13 OS=Schistosoma mansoni GN=RPL13 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.719e-41
Identity = 82/178 (46.07%), Postives = 115/178 (64.61%), Query Frame = 2
Query:   80 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLR 613
            N+V+ + HF+K WQ  VKTWFNQP                I PRP +GPLRP+V+  T +YNMK+R+GRGF+L+E++AAG+  K A TIG++VDHRR+N S+EGLQ NV RLK YKAKL++FP    K +A D+  +E+  ATQ++ P +PI      ++  K T     + A+  +R
Sbjct:    5 NDVLHHNHFRKKWQFMVKTWFNQPARKERRRQARKAKAQRIAPRPASGPLRPIVNCPTFRYNMKVRSGRGFSLQEVRAAGLNPKFARTIGIAVDHRRRNVSVEGLQRNVARLKAYKAKLILFPLNPAKPQAMDAKADEVKKATQLRRPVLPITQRAKRLKAHKPTSSELRYSAFHAIR 182          
BLAST of FC875644 vs. ExPASy Swiss-Prot
Match: RL13_SCHPO (60S ribosomal protein L13 OS=Schizosaccharomyces pombe GN=rpl13 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 8.775e-41
Identity = 90/186 (48.39%), Postives = 114/186 (61.29%), Query Frame = 2
Query:   89 IPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGA 646
            +PN HF K WQ YVKTWFNQP                I PRP    +RP V   T++YNMK+RAGRGFTLEELKAAG+ +++A TIG+ VDHRR+NRS E LQ NV+R+K Y A L+VFPR+A + K GD+     A  T V    +PI  E    E   +T++ K+F A+  L  ER   R+ GA
Sbjct:    9 LPNAHFHKDWQRYVKTWFNQPGRKLRRRQARQTKAAKIAPRPVEA-IRPAVKPPTIRYNMKVRAGRGFTLEELKAAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFPRKAGQPKKGDATDVSGAEQTDV-AAVLPITQE-AVEEAKPITEEAKNFNAFSTLSNERAYARYAGA 191          
BLAST of FC875644 vs. ExPASy Swiss-Prot
Match: RL13_DICDI (60S ribosomal protein L13 OS=Dictyostelium discoideum GN=rpl13 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.655e-39
Identity = 86/181 (47.51%), Postives = 112/181 (61.88%), Query Frame = 2
Query:   77 HNNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELV--KVTQDMKSFKAYDKLR 613
            HN V+ N HF+KHWQ  V+TWFNQP                +FPRP A  L+PVV G T++YNMK+RAGRGFTLEELKAAG+  + A TIG++VD RR N++ + L  N QRLK Y++KLV+FPR+    K G++  EE+A A Q   P+   +    T E    K T+  K F AY  L+
Sbjct:    4 HNKVLSNDHFRKHWQMRVRTWFNQPARKIRRRNNRIEKAAKVFPRPIA-TLKPVVRGSTIRYNMKVRAGRGFTLEELKAAGLTAQYARTIGIAVDTRRVNKTQQSLTLNTQRLKNYQSKLVLFPRKVNAPKKGEATKEEVAKAVQTLKPFTVKSAIAVTCEQTPRKPTEAEKKFSAYATLK 183          
The following BLAST results are available for this feature:
BLAST of FC875644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL13_CHICK6.274e-4750.5360S ribosomal protein L13 OS=Gallus gallus GN=RPL1... [more]
RL13_RAT1.398e-4650.0060S ribosomal protein L13 OS=Rattus norvegicus GN=... [more]
RL13_MOUSE2.384e-4650.0060S ribosomal protein L13 OS=Mus musculus GN=Rpl13... [more]
RL13_HUMAN4.067e-4648.9460S ribosomal protein L13 OS=Homo sapiens GN=RPL13... [more]
RL13_BOVIN4.067e-4650.5360S ribosomal protein L13 OS=Bos taurus GN=RPL13 P... [more]
RL13_SPOFR1.545e-4550.0060S ribosomal protein L13 OS=Spodoptera frugiperda... [more]
RL13_CRIGR2.636e-4549.4760S ribosomal protein L13 OS=Cricetulus griseus GN... [more]
RL13_SCHMA6.719e-4146.0760S ribosomal protein L13 OS=Schistosoma mansoni G... [more]
RL13_SCHPO8.775e-4148.3960S ribosomal protein L13 OS=Schizosaccharomyces p... [more]
RL13_DICDI1.655e-3947.5160S ribosomal protein L13 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionC31401C03EF CTVClemen1 Citrus clementina cDNA clone C31401C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875644 ID=FC875644; Name=FC875644; organism=Citrus clementina; type=EST; length=748bp
GGTTGGCTCTGTTGCCGTCGAGACTGAGAGAAACGGACATAGTCGTCTGC
ATTTCGCTCTGTAAACAGAAATGAAGCATAACAACGTAATTCCAAATGGG
CACTTTAAGAAGCATTGGCAGAACTATGTCAAGACTTGGTTCAACCAACC
TGCTCGCAAAAATCGACGACGAGTCGCTCGTCAAAAGAAGGCCGTTAAAA
TCTTCCCTCGCCCTACTGCTGGGCCGCTTCGTCCCGTCGTTCATGGCCAG
ACTTTGAAATACAACATGAAATTAAGGGCTGGCAGAGGCTTTACTCTTGA
GGAACTCAAGGCTGCTGGAATTCCCAAGAAACTGGCTCCGACAATTGGTG
TTTCAGTCGATCATCGACGCAAGAACCGTTCTCTTGAGGGTCTTCAATCT
AATGTTCAGAGGCTCAAGACTTACAAGGCTAAGTTGGTTGTTTTCCCAAG
ACGTGCTCGCAAGTTCAAGGCTGGTGATTCTGCCCCTGAGGAATTGGCAA
CAGCAACTCAAGTACAAGGACCTTACATGCCCATTGCTCCTGAGAAGCCT
ACTGTCGAGCTTGTTAAGGTTACTCAAGATATGAAGTCCTTCAAGGCTTA
TGACAAACTCCGTATCGAGCGTGTGAACGAGCGCCATTTTGGTGCCAGGA
TGAAGAAGCTGCAGAGGCTGAAAAGGAAGAGAGAAGTAAAAAACTTGTTT
AAGCACACTTTGAATGTGGCTGTTTTTGCATTTGTTAAGTGATTCATC
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