FC875644
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875644 vs. ExPASy Swiss-Prot
Match: RL13_CAEEL (60S ribosomal protein L13 OS=Caenorhabditis elegans GN=rpl-13 PE=2 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 4.076e-38 Identity = 82/188 (43.62%), Postives = 115/188 (61.17%), Query Frame = 2 Query: 80 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 643 N ++ N HF+KHW +KTWF+QP I PRP AG LR VV +YN K R GRGF+L+ELKAAGI + A TIG++VD RR N++ EGL++N RLK YKAKL++FP++A K GDS+ EEL A Q++G +P++ E +VT + + + LR ER ++++ G Sbjct: 6 NQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKRYNTKTRLGRGFSLQELKAAGISQAQARTIGIAVDVRRTNKTAEGLKANADRLKEYKAKLILFPKKASAPKKGDSSAEELKVAAQLRGDVLPLSHTITFDEPRQVTDAERKVEIFRLLRKERADKKYRG 193
BLAST of FC875644 vs. ExPASy Swiss-Prot
Match: RL13_LUMRU (60S ribosomal protein L13 OS=Lumbricus rubellus GN=RPL13 PE=2 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 1.603e-34 Identity = 81/172 (47.09%), Postives = 106/172 (61.63%), Query Frame = 2 Query: 140 FNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMP----IAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 643 FNQP I PRP AG LRP V QT KYN +LR GRGF+L+ELKAAGI KK A IG+SVD RR+N+S+E LQ NVQRLK Y++KL++FP++ K GD+ EE+ ATQ++G +P I PEK +T + + K +D+LR R ++R G Sbjct: 2 FNQPARKERRRVARRKKALAIAPRPAAGSLRPQVRCQTFKYNTRLREGRGFSLDELKAAGINKKEARAIGISVDVRRRNKSVESLQLNVQRLKEYRSKLILFPKKLSKPNKGDATEEEMKLATQLKGKLLPRTAWIKPEKARA----ITDEERKVKVFDRLRQARAHKRLAG 169
BLAST of FC875644 vs. ExPASy Swiss-Prot
Match: RL13_CANAL (60S ribosomal protein L13 OS=Candida albicans GN=RPL13 PE=3 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 2.928e-28 Identity = 75/183 (40.98%), Postives = 102/183 (55.74%), Query Frame = 2 Query: 95 NGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 643 N HF+KHWQ V+ F+Q I PRP LRPVV T+KYN K+RAGRGFTL ELKA GI K A TIG+SVDHRR+N+S E +NV RL+ YK+KLV+F ++ + + +++ V+ P APE + V+V + AY LR+ R +++ G Sbjct: 11 NNHFRKHWQERVRVHFDQAGKKASRRQSRLRKAAKIAPRPIDA-LRPVVRAPTVKYNRKVRAGRGFTLAELKAVGIAPKYARTIGISVDHRRQNKSQETFDANVARLQEYKSKLVIFDKKTKASEVASFEQVDVSATFPVEQP----APES-GLRAVEVPEQ----TAYRTLRLARNEKKYKG 183
BLAST of FC875644 vs. ExPASy Swiss-Prot
Match: RL13A_YEAST (60S ribosomal protein L13-A OS=Saccharomyces cerevisiae GN=RPL13A PE=1 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 1.113e-27 Identity = 80/188 (42.55%), Postives = 103/188 (54.79%), Query Frame = 2 Query: 80 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 643 N I HF+KHWQ VK F+Q I PRP LRPVV T+KYN K+RAGRGFTL E+KAAG+ A TIG++VDHRR+NR+ E +NVQRLK Y++K++VFPR KA ++ A AT PIA VE V + +S A+ LR+ R ++ G Sbjct: 6 NLPILKNHFRKHWQERVKVHFDQAGKKVSRRNARATRAAKIAPRPL-DLLRPVVRAPTVKYNRKVRAGRGFTLAEVKAAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPRNG---KAPEAEQVLSAAAT------FPIAQPATDVEARAVQDNGES--AFRTLRLARSEKKFRG 181
BLAST of FC875644 vs. ExPASy Swiss-Prot
Match: RL13_SACEX (60S ribosomal protein L13 OS=Saccharomyces exiguus GN=RPL13 PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.898e-27 Identity = 76/181 (41.99%), Postives = 98/181 (54.14%), Query Frame = 2 Query: 101 HFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 643 HF+KHWQ VK FNQ I PRP LRPVV T+KYN K+RAGRGFT E+KAAG+ A TIG++VDHRR+N++ E + NVQRLK Y++K++VFPR + + L+TA PIA +P VE AY LR+ R +R+ G Sbjct: 13 HFRKHWQERVKVHFNQAGKKASRRDARVAKAAKIAPRPL-DLLRPVVRAPTVKYNRKVRAGRGFTFGEVKAAGLTPAYARTIGIAVDHRRQNKNQEMFELNVQRLKEYQSKIIVFPRNGKV----PETEQVLSTAAA-----FPIA--QPAVETETRAVQDNGESAYRTLRMARSEKRYKG 181
BLAST of FC875644 vs. ExPASy Swiss-Prot
Match: RL13B_YEAST (60S ribosomal protein L13-B OS=Saccharomyces cerevisiae GN=RPL13B PE=1 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.898e-27 Identity = 80/188 (42.55%), Postives = 103/188 (54.79%), Query Frame = 2 Query: 80 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 643 N I HF+KHWQ VK F+Q I PRP LRPVV T+KYN K+RAGRGFTL E+KAAG+ A TIG++VDHRR+NR+ E +NVQRLK Y++K++VFPR KA ++ A AT PIA VE V + +S A+ LR+ R ++ G Sbjct: 6 NLPILKNHFRKHWQERVKVHFDQAGKKVSRRNARAARAAKIAPRPL-DLLRPVVRAPTVKYNRKVRAGRGFTLAEVKAAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPRDG---KAPEAEQVLSAAAT------FPIAQPATDVEARAVQDNGES--AFRTLRLARSEKKFRG 181 The following BLAST results are available for this feature:
BLAST of FC875644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 26
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC875644 ID=FC875644; Name=FC875644; organism=Citrus clementina; type=EST; length=748bpback to top |