FC875644

Overview
NameFC875644
Unique NameFC875644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length748
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875644 vs. ExPASy Swiss-Prot
Match: RL13_CAEEL (60S ribosomal protein L13 OS=Caenorhabditis elegans GN=rpl-13 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.076e-38
Identity = 82/188 (43.62%), Postives = 115/188 (61.17%), Query Frame = 2
Query:   80 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 643
            N ++ N HF+KHW   +KTWF+QP                I PRP AG LR VV     +YN K R GRGF+L+ELKAAGI +  A TIG++VD RR N++ EGL++N  RLK YKAKL++FP++A   K GDS+ EEL  A Q++G  +P++      E  +VT   +  + +  LR ER ++++ G
Sbjct:    6 NQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKRYNTKTRLGRGFSLQELKAAGISQAQARTIGIAVDVRRTNKTAEGLKANADRLKEYKAKLILFPKKASAPKKGDSSAEELKVAAQLRGDVLPLSHTITFDEPRQVTDAERKVEIFRLLRKERADKKYRG 193          
BLAST of FC875644 vs. ExPASy Swiss-Prot
Match: RL13_LUMRU (60S ribosomal protein L13 OS=Lumbricus rubellus GN=RPL13 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.603e-34
Identity = 81/172 (47.09%), Postives = 106/172 (61.63%), Query Frame = 2
Query:  140 FNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMP----IAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 643
            FNQP                I PRP AG LRP V  QT KYN +LR GRGF+L+ELKAAGI KK A  IG+SVD RR+N+S+E LQ NVQRLK Y++KL++FP++  K   GD+  EE+  ATQ++G  +P    I PEK       +T + +  K +D+LR  R ++R  G
Sbjct:    2 FNQPARKERRRVARRKKALAIAPRPAAGSLRPQVRCQTFKYNTRLREGRGFSLDELKAAGINKKEARAIGISVDVRRRNKSVESLQLNVQRLKEYRSKLILFPKKLSKPNKGDATEEEMKLATQLKGKLLPRTAWIKPEKARA----ITDEERKVKVFDRLRQARAHKRLAG 169          
BLAST of FC875644 vs. ExPASy Swiss-Prot
Match: RL13_CANAL (60S ribosomal protein L13 OS=Candida albicans GN=RPL13 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.928e-28
Identity = 75/183 (40.98%), Postives = 102/183 (55.74%), Query Frame = 2
Query:   95 NGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 643
            N HF+KHWQ  V+  F+Q                 I PRP    LRPVV   T+KYN K+RAGRGFTL ELKA GI  K A TIG+SVDHRR+N+S E   +NV RL+ YK+KLV+F ++ +  +       +++    V+ P    APE   +  V+V +      AY  LR+ R  +++ G
Sbjct:   11 NNHFRKHWQERVRVHFDQAGKKASRRQSRLRKAAKIAPRPIDA-LRPVVRAPTVKYNRKVRAGRGFTLAELKAVGIAPKYARTIGISVDHRRQNKSQETFDANVARLQEYKSKLVIFDKKTKASEVASFEQVDVSATFPVEQP----APES-GLRAVEVPEQ----TAYRTLRLARNEKKYKG 183          
BLAST of FC875644 vs. ExPASy Swiss-Prot
Match: RL13A_YEAST (60S ribosomal protein L13-A OS=Saccharomyces cerevisiae GN=RPL13A PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.113e-27
Identity = 80/188 (42.55%), Postives = 103/188 (54.79%), Query Frame = 2
Query:   80 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 643
            N  I   HF+KHWQ  VK  F+Q                 I PRP    LRPVV   T+KYN K+RAGRGFTL E+KAAG+    A TIG++VDHRR+NR+ E   +NVQRLK Y++K++VFPR     KA ++     A AT       PIA     VE   V  + +S  A+  LR+ R  ++  G
Sbjct:    6 NLPILKNHFRKHWQERVKVHFDQAGKKVSRRNARATRAAKIAPRPL-DLLRPVVRAPTVKYNRKVRAGRGFTLAEVKAAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPRNG---KAPEAEQVLSAAAT------FPIAQPATDVEARAVQDNGES--AFRTLRLARSEKKFRG 181          
BLAST of FC875644 vs. ExPASy Swiss-Prot
Match: RL13_SACEX (60S ribosomal protein L13 OS=Saccharomyces exiguus GN=RPL13 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.898e-27
Identity = 76/181 (41.99%), Postives = 98/181 (54.14%), Query Frame = 2
Query:  101 HFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 643
            HF+KHWQ  VK  FNQ                 I PRP    LRPVV   T+KYN K+RAGRGFT  E+KAAG+    A TIG++VDHRR+N++ E  + NVQRLK Y++K++VFPR  +         + L+TA        PIA  +P VE            AY  LR+ R  +R+ G
Sbjct:   13 HFRKHWQERVKVHFNQAGKKASRRDARVAKAAKIAPRPL-DLLRPVVRAPTVKYNRKVRAGRGFTFGEVKAAGLTPAYARTIGIAVDHRRQNKNQEMFELNVQRLKEYQSKIIVFPRNGKV----PETEQVLSTAAA-----FPIA--QPAVETETRAVQDNGESAYRTLRMARSEKRYKG 181          
BLAST of FC875644 vs. ExPASy Swiss-Prot
Match: RL13B_YEAST (60S ribosomal protein L13-B OS=Saccharomyces cerevisiae GN=RPL13B PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.898e-27
Identity = 80/188 (42.55%), Postives = 103/188 (54.79%), Query Frame = 2
Query:   80 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 643
            N  I   HF+KHWQ  VK  F+Q                 I PRP    LRPVV   T+KYN K+RAGRGFTL E+KAAG+    A TIG++VDHRR+NR+ E   +NVQRLK Y++K++VFPR     KA ++     A AT       PIA     VE   V  + +S  A+  LR+ R  ++  G
Sbjct:    6 NLPILKNHFRKHWQERVKVHFDQAGKKVSRRNARAARAAKIAPRPL-DLLRPVVRAPTVKYNRKVRAGRGFTLAEVKAAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPRDG---KAPEAEQVLSAAAT------FPIAQPATDVEARAVQDNGES--AFRTLRLARSEKKFRG 181          
The following BLAST results are available for this feature:
BLAST of FC875644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL13_CAEEL4.076e-3843.6260S ribosomal protein L13 OS=Caenorhabditis elegan... [more]
RL13_LUMRU1.603e-3447.0960S ribosomal protein L13 OS=Lumbricus rubellus GN... [more]
RL13_CANAL2.928e-2840.9860S ribosomal protein L13 OS=Candida albicans GN=R... [more]
RL13A_YEAST1.113e-2742.5560S ribosomal protein L13-A OS=Saccharomyces cerev... [more]
RL13_SACEX1.898e-2741.9960S ribosomal protein L13 OS=Saccharomyces exiguus... [more]
RL13B_YEAST1.898e-2742.5560S ribosomal protein L13-B OS=Saccharomyces cerev... [more]

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Properties
Property NameValue
Genbank descriptionC31401C03EF CTVClemen1 Citrus clementina cDNA clone C31401C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875644 ID=FC875644; Name=FC875644; organism=Citrus clementina; type=EST; length=748bp
GGTTGGCTCTGTTGCCGTCGAGACTGAGAGAAACGGACATAGTCGTCTGC
ATTTCGCTCTGTAAACAGAAATGAAGCATAACAACGTAATTCCAAATGGG
CACTTTAAGAAGCATTGGCAGAACTATGTCAAGACTTGGTTCAACCAACC
TGCTCGCAAAAATCGACGACGAGTCGCTCGTCAAAAGAAGGCCGTTAAAA
TCTTCCCTCGCCCTACTGCTGGGCCGCTTCGTCCCGTCGTTCATGGCCAG
ACTTTGAAATACAACATGAAATTAAGGGCTGGCAGAGGCTTTACTCTTGA
GGAACTCAAGGCTGCTGGAATTCCCAAGAAACTGGCTCCGACAATTGGTG
TTTCAGTCGATCATCGACGCAAGAACCGTTCTCTTGAGGGTCTTCAATCT
AATGTTCAGAGGCTCAAGACTTACAAGGCTAAGTTGGTTGTTTTCCCAAG
ACGTGCTCGCAAGTTCAAGGCTGGTGATTCTGCCCCTGAGGAATTGGCAA
CAGCAACTCAAGTACAAGGACCTTACATGCCCATTGCTCCTGAGAAGCCT
ACTGTCGAGCTTGTTAAGGTTACTCAAGATATGAAGTCCTTCAAGGCTTA
TGACAAACTCCGTATCGAGCGTGTGAACGAGCGCCATTTTGGTGCCAGGA
TGAAGAAGCTGCAGAGGCTGAAAAGGAAGAGAGAAGTAAAAAACTTGTTT
AAGCACACTTTGAATGTGGCTGTTTTTGCATTTGTTAAGTGATTCATC
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