FC875646

Overview
NameFC875646
Unique NameFC875646
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length403
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig695 contig Ccv1_Contig695:691..1093. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875646 vs. ExPASy Swiss-Prot
Match: SCP36_ARATH (Serine carboxypeptidase-like 36 OS=Arabidopsis thaliana GN=SCPL36 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.332e-14
Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 1
Query:    1 GDTDGRVPVTSSRYSINALNLPVETAWYPWYTDGEVGGYVLGYKG-VIFTTVRGAGHMVPTNQPQRALIMISSFLEGILPPSS 246
            GD D  +P TS+   +  +NL V   W PW+T G VGG+   YKG + F TV+GAGH VPT+QP  AL + +SF+     P +
Sbjct:  399 GDVDLVIPFTSTLAVVKTMNLTVVKEWRPWFTGGHVGGFTEDYKGNLTFVTVKGAGHSVPTDQPIHALNIFTSFIRNTPLPQT 481          
BLAST of FC875646 vs. ExPASy Swiss-Prot
Match: SCP28_ARATH (Serine carboxypeptidase-like 28 OS=Arabidopsis thaliana GN=SCPL28 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.753e-13
Identity = 38/85 (44.71%), Postives = 54/85 (63.53%), Query Frame = 1
Query:    1 GDTDGRVPVTSSRYSINALNLPVETAWYPWY-TDGEVGGYVLGYKG--VIFTTVRGAGHMVPTNQPQRALIMISSFLEGILPPSS 246
            GD+D  +P++ +R+SINA+ L     WYPWY + G VGG+   Y+   + +TTVR AGH VP +QP+ AL + + FL     PSS
Sbjct:  376 GDSDAVLPLSGTRHSINAMKLKSSKRWYPWYHSHGLVGGWSQVYEDGLLTYTTVRAAGHEVPLSQPRLALFLFTHFLANHSLPSS 460          
BLAST of FC875646 vs. ExPASy Swiss-Prot
Match: SCP39_ARATH (Serine carboxypeptidase-like 39 OS=Arabidopsis thaliana GN=SCPL39 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.023e-12
Identity = 31/75 (41.33%), Postives = 48/75 (64.00%), Query Frame = 1
Query:    1 GDTDGRVPVTSSRYSINALNLPVETAWYPWYTDGEVGGYVLGYKGVI-FTTVRGAGHMVPTNQPQRALIMISSFL 222
            GDTD  +P+T + +++  +NL   T W PW+++G+VGG+   YKG   + TV GAGH VP  +P+ AL +   F+
Sbjct:  418 GDTDTVIPLTVTMHALKMMNLTAVTDWLPWFSEGQVGGFTEEYKGNFRYATVIGAGHEVPLYKPKAALTLFKHFI 492          
BLAST of FC875646 vs. ExPASy Swiss-Prot
Match: SCP37_ARATH (Serine carboxypeptidase-like 37 OS=Arabidopsis thaliana GN=SCPL37 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 4.023e-12
Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = 1
Query:    1 GDTDGRVPVTSSRYSINALNLPVETAWYPWYTDGEVGGYVLGYKG-VIFTTVRGAGHMVPTNQPQRALIMISSFL 222
            GD D  +P  S+   +  +NL V   + PW+T G++GG+   YKG + F TV+GAGH VPT+QP  AL + +SF+
Sbjct:  404 GDVDLEIPFASTLAVVKEMNLTVVKEFRPWFTGGQLGGFTEDYKGNLTFVTVKGAGHSVPTDQPIHALNIFTSFI 478          
BLAST of FC875646 vs. ExPASy Swiss-Prot
Match: SCP38_ARATH (Serine carboxypeptidase-like 38 OS=Arabidopsis thaliana GN=SCPL38 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.255e-12
Identity = 30/83 (36.14%), Postives = 49/83 (59.04%), Query Frame = 1
Query:    1 GDTDGRVPVTSSRYSINALNLPVETAWYPWYTDGEVGGYVLGY-KGVIFTTVRGAGHMVPTNQPQRALIMISSFLEGILPPSS 246
            GD D  +P T++   +  +NL V   W PW+T G++GG+   Y + + + TV+G+GH VP +QP  AL + +SF+     P +
Sbjct:  404 GDVDAAIPFTATMAVLKTMNLTVVNEWRPWFTGGQLGGFTEDYERNLTYATVKGSGHSVPLDQPVHALNLFTSFIRNTPLPQT 486          
BLAST of FC875646 vs. ExPASy Swiss-Prot
Match: CBP1_HORVU (Serine carboxypeptidase 1 OS=Hordeum vulgare GN=CBP1 PE=1 SV=4)

HSP 1 Score: 67.781 bits (164), Expect = 1.997e-11
Identity = 34/77 (44.16%), Postives = 44/77 (57.14%), Query Frame = 1
Query:    1 GDTDGRVPVTSSRYSINALNLPVETAWYPWYTDGEVGGYVLGYK-GVIFTTVRGAGHMVPTNQPQRALIMISSFLEG 228
            GD D  VP T S     +L   V  +W PW T+G+V GY  GY+ G+ F T++GAGH VP  +PQ A    S +L G
Sbjct:  420 GDHDMCVPFTGSEAWTKSLGYGVVDSWRPWITNGQVSGYTEGYEHGLTFATIKGAGHTVPEYKPQEAFAFYSRWLAG 496          
BLAST of FC875646 vs. ExPASy Swiss-Prot
Match: CBP1_ORYSJ (Serine carboxypeptidase 1 OS=Oryza sativa subsp. japonica GN=CBP1 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.588e-11
Identity = 32/77 (41.56%), Postives = 45/77 (58.44%), Query Frame = 1
Query:    1 GDTDGRVPVTSSRYSINALNLPVETAWYPWYTDGEVGGYVLGYK-GVIFTTVRGAGHMVPTNQPQRALIMISSFLEG 228
            GD D  VP T +     +L   V  +W PW+ +G+V GY  GY+ G+ F T++GAGH VP  +PQ +L   S +L G
Sbjct:  431 GDHDMCVPYTGTEAWTRSLGYGVIDSWRPWHLNGQVSGYTQGYEHGLTFATIKGAGHTVPEYKPQESLAFYSRWLAG 507          
The following BLAST results are available for this feature:
BLAST of FC875646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
SCP36_ARATH7.332e-1444.58Serine carboxypeptidase-like 36 OS=Arabidopsis tha... [more]
SCP28_ARATH4.753e-1344.71Serine carboxypeptidase-like 28 OS=Arabidopsis tha... [more]
SCP39_ARATH4.023e-1241.33Serine carboxypeptidase-like 39 OS=Arabidopsis tha... [more]
SCP37_ARATH4.023e-1244.00Serine carboxypeptidase-like 37 OS=Arabidopsis tha... [more]
SCP38_ARATH5.255e-1236.14Serine carboxypeptidase-like 38 OS=Arabidopsis tha... [more]
CBP1_HORVU1.997e-1144.16Serine carboxypeptidase 1 OS=Hordeum vulgare GN=CB... [more]
CBP1_ORYSJ7.588e-1141.56Serine carboxypeptidase 1 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionC31401C05EF CTVClemen1 Citrus clementina cDNA clone C31401C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875646 ID=FC875646; Name=FC875646; organism=Citrus clementina; type=EST; length=403bp
GGTGACACAGATGGGCGAGTTCCAGTGACATCCTCTAGATACTCCATCAA
TGCTCTGAACCTTCCGGTTGAAACTGCTTGGTACCCATGGTACACTGATG
GTGAGGTTGGTGGATATGTGCTCGGGTACAAGGGAGTGATATTCACTACT
GTTAGAGGGGCAGGGCATATGGTTCCTACTAACCAGCCACAGCGAGCTCT
CATCATGATCTCATCTTTCCTCGAGGGGATACTTCCTCCCTCCTCTTAAG
AAAAGACATCGAAAACTGTTATCCCAGCTTGACATATTAGTTATTTCGCA
ATTTGAAATTTCAGTTCCATTATGCATTCTGAGCACGAAGAGTTCCTATG
CTATTATACTTGTATGTCCTAAATAATAGTAACCAGAATAAATGAATTAT
CNT
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