FC875652

Overview
NameFC875652
Unique NameFC875652
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15392 contig Ccv1_Contig15392:30..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875652 vs. ExPASy Swiss-Prot
Match: E1313_ARATH (Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.609e-27
Identity = 75/200 (37.50%), Postives = 121/200 (60.50%), Query Frame = 1
Query:   85 IGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPA-AQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIAS--LLPAMRTLKSALDAANLSS-VQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPYFGFKPQ----TLNYALFK 660
            +GV YG  A++LP P +V   ++ Q  I  V+++D N + L+AF +T+I + + V N D+ A ++  +   +W+ N++LP++P T   YI +G E  +T D  + AS  ++PAM+ + +AL    LS  ++VST  SLGILS S PPS G F   Y   +   +LEF  + KSPFM++ YPY+ ++      +L+Y LF+
Sbjct:   26 VGVCYGRSADDLPTPSKVVQLIQ-QHNIKYVRIYDYNSQVLKAFGNTSIELMIGVPNSDLNAFSQSQSNVDTWLKNSVLPYYPTTKITYITVGAE--STDDPHINASSFVVPAMQNVLTALRKVGLSRRIKVSTTLSLGILSRSFPPSAGAFNSSYAYFL-RPMLEFLAENKSPFMIDLYPYYAYRDSPNNVSLDYVLFE 221          
BLAST of FC875652 vs. ExPASy Swiss-Prot
Match: E13B_HORVU (Glucan endo-1,3-beta-glucosidase GII OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.362e-26
Identity = 73/207 (35.27%), Postives = 116/207 (56.04%), Query Frame = 1
Query:   58 AITPSAADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPA-AQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLSSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPYFGFKPQ----TLNYALFKP 663
            A  P++  SIGV YG I NNLP    V    +++  I+ ++++ A+ + L A  ++ I + + +GN  +  +A   + A SWV NN+ P++P    +YI  GNE+   + +    S+LPAMR L +AL AA L +++VST      ++ S PPS G F+  Y   + AR+L     T +P + N YPYF ++      +LNYA F+P
Sbjct:   20 AAVPTSVQSIGVCYGVIGNNLPSRSDVVQLYRSKG-INGMRIYFADGQALSALRNSGIGLILDIGNDQLANIAASTSNAASWVQNNVRPYYPAVNIKYIAAGNEVQGGATQ----SILPAMRNLNAALSAAGLGAIKVSTSIRFDEVANSFPPSAGVFKNAYMTDV-ARLL---ASTGAPLLANVYPYFAYRDNPGSISLNYATFQP 217          
BLAST of FC875652 vs. ExPASy Swiss-Prot
Match: E13D_TOBAC (Glucan endo-1,3-beta-glucosidase OS=Nicotiana tabacum GN=SP41B PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.324e-26
Identity = 77/207 (37.20%), Postives = 108/207 (52.17%), Query Frame = 1
Query:   52 CNAITPSAADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPAAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPYFGFKPQT----LNYALF 657
            CN     A  +IGV YG IANNLP  Q V N  K    I +++++  +    +A   +NI + + V N D+ ALA    A  WV +NI  H P   F+YI +GNE+  T++      LL AM+ + +AL AA L   ++VST    G+L+ + PP    FR+     I   I+EF  +   P + N YPYFG    T    L+YALF
Sbjct:   25 CNIQITGAQSNIGVCYGEIANNLPSEQDVINLYKANG-IRKMRIYYPDTNIFKALNGSNIEIILEVPNQDLEALANSSIANGWVQDNIRSHFPYVKFKYISIGNEVSPTNNGQYSQFLLHAMKNVYNALAAAGLQDKIKVSTATYSGLLANTYPPKDSIFREELKSFI-NPIIEFLARNNLPLLANIYPYFGHIYNTVDVPLSYALF 229          
BLAST of FC875652 vs. ExPASy Swiss-Prot
Match: E13C_TOBAC (Glucan endo-1,3-beta-glucosidase OS=Nicotiana tabacum GN=SP41A PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.964e-26
Identity = 74/207 (35.75%), Postives = 110/207 (53.14%), Query Frame = 1
Query:   52 CNAITPSAADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPAAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPYFGFKPQT----LNYALF 657
            CN     A  +IGV YG IANNLP  Q V N  K    I ++++++++    ++   +NI + + V N D+ ALA    A  WV +NI  H P   F+YI +GNE+  +++      LL AM  + +AL AA L   ++V+T    G+L+ + PP    FR+ +   I   I+EF  +   P + N YPYFG    T    L+YALF
Sbjct:   25 CNIQMTGAQSNIGVCYGKIANNLPSEQDVINLYKANG-IRKMRIYNSDTNIFKSLNGSNIEIILDVPNQDLEALANSSIANGWVQDNIRSHFPYVKFKYISIGNEVSPSNNGQYSQFLLHAMENVYNALAAAGLQDKIKVTTATYSGLLANTYPPKDSIFREEFKSFI-NPIIEFLARNNLPLLANIYPYFGHIYNTVDVPLSYALF 229          
BLAST of FC875652 vs. ExPASy Swiss-Prot
Match: E13B_BRACM (Glucan endo-1,3-beta-glucosidase OS=Brassica campestris GN=BGL PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.724e-25
Identity = 72/201 (35.82%), Postives = 113/201 (56.22%), Query Frame = 1
Query:   70 SAADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPA-AQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLSSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPYFGF--KPQTLNYALFKP 663
            + A  IGV +G + NN+P P +V    K Q +I R++++  NP+ L A   +NI   + V NGD+  LA   A A +WV +N+  ++    F+YI +GNE+         A+L+ AM+ +  AL AA LS+++VST   +G    + PPS GRF+  Y R     ++ F    +SP +VN Y YFG+  +  +L +AL +P
Sbjct:   22 TTAGQIGVCFGQMGNNIPNPSEVVAMFK-QYSIPRMRMYGPNPDALNALRGSNIEFILDVPNGDLKRLADSQAEANTWVRDNVQKYN-DVRFKYISVGNEVKPGEPGA--AALIQAMQNIDRALSAAGLSNIKVSTTTFMGPSRNTYPPSRGRFKDEY-RNFLQPVIGFLVNKRSPLLVNIYTYFGYMNRDVSLQFALLQP 217          
BLAST of FC875652 vs. ExPASy Swiss-Prot
Match: E13D_HORVU (Glucan endo-1,3-beta-glucosidase GIV OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.275e-24
Identity = 72/199 (36.18%), Postives = 106/199 (53.27%), Query Frame = 1
Query:   85 IGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALA-KLPAAQSWVANNILPHHPQTI-FRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLSSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPYFGF----KPQTLNYALFKP 663
            IGV YG IANNLPP ++V    +++  I  ++++   P+ +RA   + I + +   N D+  LA  L AA SWV  N+ P+H   +  RYI +GNEI   + +    S+L AMR L  AL AA L  ++VST     +++ S PPS+  F + Y       I      T +P + N YPYF +    +   LNYA F+P
Sbjct:    1 IGVCYGIIANNLPPRREVVQLYRSKG-ITNMRIYSVQPQAIRALHGSGIRLMLGTTNNDVAVLAGSLSAATSWVHANVKPYHSAGVTIRYIAVGNEITGGAAQ----SILAAMRNLNKALAAARLGGIKVSTAVRFDVITNSFPPSSAVFAQPY----MVDIARHLASTNAPLLANVYPYFAYSGNPRDIKLNYATFQP 190          
BLAST of FC875652 vs. ExPASy Swiss-Prot
Match: E13L_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform GL153 OS=Nicotiana tabacum GN=GGL4 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.710e-24
Identity = 72/199 (36.18%), Postives = 104/199 (52.26%), Query Frame = 1
Query:   76 ADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPAAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLSS-VQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPYFGFKPQT----LNYALF 657
            A SIGV YG IANNLP  Q V N  K    I +++++  +    +A   +NI + + V N D+ ALA    A  WV +NI  H P   F+YI +GNE+   ++      LL AM  + +AL A+ L   ++V+T    G+L+ + PP    FR  ++  I   I++F  Q   P + N YPYF     T    L+YALF
Sbjct:   29 AQSIGVCYGKIANNLPSEQDVINLYKANG-IRKMRIYYPDKNIFKALKGSNIEIILDVPNQDLEALANSSIANGWVQDNIRSHFPYVKFKYISIGNEVSPINNGQYSQFLLHAMENVYNALAASGLQDKIKVTTATYSGLLANTYPPKASIFRGEFNSFINP-IIQFLAQNNLPLLANVYPYFVHISNTADVPLSYALF 225          
BLAST of FC875652 vs. ExPASy Swiss-Prot
Match: E13K_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform GL161 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.846e-24
Identity = 72/199 (36.18%), Postives = 105/199 (52.76%), Query Frame = 1
Query:   76 ADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPAAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLSS-VQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPYFGFKPQT----LNYALF 657
            A SIGV YG  ANNLP  Q V N L     I +++++  +    +A   +NI + + V N D+ ALA    A  WV +NI  H P   F+YI +GN++  T++      LL AM+ + +AL AA L   ++VST    G+L+ + PP    FR+ +   I   I++F  +   P + N YPYF     T    L+YALF
Sbjct:    9 AQSIGVCYGKAANNLPSDQDVIN-LYNANGIRKLRIYYPDKNIFKALNGSNIEIILGVPNQDLEALANSSIANGWVQDNIRSHFPYVKFKYISIGNKVSPTNNDQYSEFLLQAMKNVYNALAAAGLQDMIKVSTVTYSGVLANTYPPERSIFREEFKSFI-NPIIQFLARNNLPLLANVYPYFVHVSNTADVSLSYALF 205          
BLAST of FC875652 vs. ExPASy Swiss-Prot
Match: E13B_PRUPE (Glucan endo-1,3-beta-glucosidase, basic isoform OS=Prunus persica GN=GNS1 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.265e-24
Identity = 71/197 (36.04%), Postives = 110/197 (55.84%), Query Frame = 1
Query:   85 IGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPA-AQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLS-SVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPYFGFKPQT----LNYALF 657
            IGV  G + ++LPP  +V    KT   I R++L+D NP  L A   +NI + + V N ++  +A   A A +WV NN+  ++    F+YI +GNE+  +        L+PAMR ++ A+  A L+  ++VST    G+L  + PPS G F+  Y+ L++  I+ F    +SP +VN YPYF +   T    L+YALF
Sbjct:   40 IGVCNGMVGDDLPPQAEVVALYKTNN-IPRMRLYDPNPAALEALRGSNIKLLLGVPNENLQYIALSQANANAWVQNNVR-NYANVKFKYIAVGNEVKPSDS--FAQFLVPAMRNIQEAISLAGLAKKIKVSTAIDTGVLGETFPPSIGSFKSEYNALLYP-IIRFLVSHQSPLLVNLYPYFAYSGNTQDIRLDYALF 231          
BLAST of FC875652 vs. ExPASy Swiss-Prot
Match: E13A_SOLLC (Glucan endo-1,3-beta-glucosidase A OS=Solanum lycopersicum PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.265e-24
Identity = 74/201 (36.82%), Postives = 101/201 (50.25%), Query Frame = 1
Query:   70 SAADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPAAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLL-PAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPYFGFKPQT--LNYALFK 660
            + A  IGV YG IANNLP  Q V   L     I +++++        A   +NI + + V N D+ ALA     Q WV +NI  H P   F+YI +GNE+    D    A  + PAM  + +AL +A L + ++VST   LG+L+ + PP    FR  Y   I   I+ F  +   P + N YPYFG       L YALFK
Sbjct:   21 TGAQPIGVCYGKIANNLPSDQDVIK-LYNSNNIKKMRIYFPETNVFNALKGSNIEIILDVPNQDLEALANPSKRQGWVQDNIRNHFPDVKFKYIAVGNEVDPGRDSGKYARFVGPAMENIYNALSSAGLQNQIKVSTATYLGLLTNTYPPRDSIFRDEYKSFI-NPIIGFLSRHNLPLLANIYPYFGHADDNVPLPYALFK 219          
The following BLAST results are available for this feature:
BLAST of FC875652 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
E1313_ARATH1.609e-2737.50Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis... [more]
E13B_HORVU1.362e-2635.27Glucan endo-1,3-beta-glucosidase GII OS=Hordeum vu... [more]
E13D_TOBAC2.324e-2637.20Glucan endo-1,3-beta-glucosidase OS=Nicotiana taba... [more]
E13C_TOBAC3.964e-2635.75Glucan endo-1,3-beta-glucosidase OS=Nicotiana taba... [more]
E13B_BRACM5.724e-2535.82Glucan endo-1,3-beta-glucosidase OS=Brassica campe... [more]
E13D_HORVU1.275e-2436.18Glucan endo-1,3-beta-glucosidase GIV OS=Hordeum vu... [more]
E13L_TOBAC3.710e-2436.18Glucan endo-1,3-beta-glucosidase, acidic isoform G... [more]
E13K_TOBAC4.846e-2436.18Glucan endo-1,3-beta-glucosidase, acidic isoform G... [more]
E13B_PRUPE8.265e-2436.04Glucan endo-1,3-beta-glucosidase, basic isoform OS... [more]
E13A_SOLLC8.265e-2436.82Glucan endo-1,3-beta-glucosidase A OS=Solanum lyco... [more]

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Properties
Property NameValue
Genbank descriptionC31401C12EF CTVClemen1 Citrus clementina cDNA clone C31401C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875652 ID=FC875652; Name=FC875652; organism=Citrus clementina; type=EST; length=681bp
ACTGTTACTAAACTCTCTCAATTCCTCCTCTTCCTCTTCCTCTCCCTGTC
TTGCAACGCCATCACCCCCTCCGCCGCTGACTCCATCGGAGTCAACTACG
GCGCCATCGCCAACAACCTCCCGCCACCTCAGCAAGTAGCCAATTTCCTC
AAAACCCAAACCACCATAGACCGCGTCAAGCTCTTCGACGCCAACCCCGA
ATTCCTCCGCGCCTTCGCCCACACAAACATCCCCGTCACCGTCACAGTCG
GCAACGGCGACATACCTGCCCTCGCAAAACTCCCCGCCGCCCAGTCCTGG
GTCGCTAACAACATCCTGCCGCATCACCCCCAGACCATCTTCAGATACAT
CGTCCTCGGCAACGAAATCTTGGCCACGTCGGATAAAGTCCTCATCGCTT
CTCTCCTGCCCGCCATGAGAACTCTTAAATCAGCTCTCGATGCTGCCAAT
CTGAGCAGCGTCCAGGTGTCGACACCTCATTCCCTGGGGATTTTATCAAC
CTCTGAGCCGCCGAGTACCGGAAGGTTCCGTAAAGGTTACGATAGGCTTA
TCTTTGCTAGGATTCTCGAGTTCCACAGACAGACTAAATCCCCGTTTATG
GTTAACCCCTACCCGTATTTTGGGTTCAAGCCTCAGACGCTCAACTACGC
CTTGTTTAAACCAACGCCGGCGTTTTTGATC
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