FC875652

Overview
NameFC875652
Unique NameFC875652
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15392 contig Ccv1_Contig15392:30..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875652 vs. ExPASy Swiss-Prot
Match: E132_ARATH (Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis thaliana GN=At1g66250 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.405e-23
Identity = 70/201 (34.83%), Postives = 112/201 (55.72%), Query Frame = 1
Query:   85 IGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPA-AQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLSS-VQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPYFGFKPQT----LNYALFKPTP 669
            IGVN G   +++P P QV   LK Q  I  ++L++A+P  L A A+T I V +++ N  +  + +  + A +WV  N++ H+P T+   + +G+E+L TS       L+ A++ + +AL +ANL   ++VSTP S  ++    PPS   F +  + +I   +L F + T S  MVN YPY  +        L+YALFKP P
Sbjct:   32 IGVNIGTDLSDMPHPTQVVALLKAQE-IRHIRLYNADPGLLIALANTGIKVIISIPNDQLLGIGQSNSTAANWVKRNVIAHYPATMITAVSVGSEVL-TSLSNAAPVLVSAIKNVHAALLSANLDKLIKVSTPLSTSLILDPFPPSQAFFNRSLNAVI-VPLLSFLQSTNSYLMVNVYPYIDYMQSNGVIPLDYALFKPIP 229          
BLAST of FC875652 vs. ExPASy Swiss-Prot
Match: E13B_NICPL (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Nicotiana plumbaginifolia GN=GN2 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.141e-23
Identity = 73/208 (35.10%), Postives = 112/208 (53.85%), Query Frame = 1
Query:   55 NAITPSAADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAK-LPAAQSWVANNILPHHPQTIFRYIVLGNEIL-ATSDKVLIASLLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPYFGFKPQ----TLNYALF 657
            ++I  + A+SIGV YG + NNLP   +V    K++  I R++L+D N   L+A   +NI V + + N D+  +A  +  A+ WV  N+    P    +YI +GNEI   T    L + L PAM  +  A+  A L ++++VST   + ++  S PPS G FR    R     I+ F R T++P +VN YPYF +       +L Y+LF
Sbjct:   25 SSIEIAGAESIGVCYGMLGNNLPNHWEVIQLYKSR-NIGRLRLYDPNHGALQALKGSNIEVMLGLPNSDVKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSYLTSFLTPAMVNIYKAIGEAGLGNNIKVSTSVDMTLIGNSYPPSQGSFRND-ARWFVDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYSLF 230          
BLAST of FC875652 vs. ExPASy Swiss-Prot
Match: E13B_HEVBR (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Hevea brasiliensis GN=HGN1 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.141e-23
Identity = 72/198 (36.36%), Postives = 104/198 (52.53%), Query Frame = 1
Query:   85 IGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPAAQSWVANNILPHHPQTIFRYIVLGNEILATSDKV--LIASLLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPYF--GFKPQ--TLNYALF 657
            +GV YG   NNLPP  +V    K ++ I R++++D N   L A   +NI + + V N D+ +L     A+SWV  N+       +FRYI +GNEI   +     L   +LPAMR +  A+ +A L   ++VST   L ++  S PPS G FR    R     I+ F    +SP + N YPYF   + P+  +L YALF
Sbjct:   38 VGVCYGMQGNNLPPVSEVIALYK-KSNITRMRIYDPNRAVLEALRGSNIELILGVPNSDLQSLTNPSNAKSWVQKNVRGFWSSVLFRYIAVGNEISPVNRGTAWLAQFVLPAMRNIHDAIRSAGLQDQIKVSTAIDLTLVGNSYPPSAGAFRDDV-RSYLDPIIGFLSSIRSPLLANIYPYFTYAYNPRDISLPYALF 233          
BLAST of FC875652 vs. ExPASy Swiss-Prot
Match: E13E_TOBAC (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform GGIB50 OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.102e-23
Identity = 73/208 (35.10%), Postives = 112/208 (53.85%), Query Frame = 1
Query:   55 NAITPSAADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAK-LPAAQSWVANNILPHHPQTIFRYIVLGNEIL-ATSDKVLIASLLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPYFGFKPQ----TLNYALF 657
            ++I  + A SIGV YG + NNLP   +V    K++  I R++L+D N   L+A   +NI V + + N D+  +A  +  A+ WV  N+    P    +YI +GNEI   T    L + L PAM  +  A+  A L ++++VST   + ++  S PPS G FR      + A I+ F R T++P +VN YPYF +       +L Y+LF
Sbjct:   25 SSIDIAGAQSIGVCYGMLGNNLPNHWEVIQLYKSRN-IGRLRLYDPNHGALQALKGSNIEVMLGLPNSDVKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSYLTSFLTPAMVNIYKAIGEAGLGNNIKVSTSVDMTLIGNSYPPSQGSFRNDARWFVDA-IVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYSLF 230          
BLAST of FC875652 vs. ExPASy Swiss-Prot
Match: E13A_HORVU (Glucan endo-1,3-beta-glucosidase GI OS=Hordeum vulgare PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.357e-23
Identity = 67/200 (33.50%), Postives = 108/200 (54.00%), Query Frame = 1
Query:   82 SIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPA--LAKLPAAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLSSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPYFGFKPQ----TLNYALFKP 663
            +IGV YG +ANNLPP  +V    ++   +  ++++ A+ + L A   + I + + VG  D+ A   A    A +WV +N+ P++P    +YI  GNE+     +    +++PAMR L +AL A  L +++VST      ++ + PPS G F + Y   + AR+L     T +P + N YPYF +K       LNYA F+P
Sbjct:    1 TIGVCYGVVANNLPPANEVVQLYRSNG-LTGMRIYFADAKALSALRGSGIGLILDVGGNDVLASLAANASNAANWVRDNVRPYYPAVNIKYIAAGNEVWGGDTQ----NIVPAMRNLGAALKAPGLGTIKVSTSIRFDAVTNTFPPSNGVFAQAYMTDV-ARLL---ASTGAPLLTNVYPYFAYKDNPRDIQLNYATFRP 191          
BLAST of FC875652 vs. ExPASy Swiss-Prot
Match: GUB2_HORVU (Lichenase-2 (Fragment) OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.997e-23
Identity = 74/202 (36.63%), Postives = 106/202 (52.48%), Query Frame = 1
Query:   67 PSAADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPAAQ-SWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLSSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPY--FGFKPQTLN--YALF 657
            P + +SIGV YG  ANNLP    V +  K    I  ++L+  N   L+A   T I V V   N  +  LA  PAA  SWV +NI  + P+  FRY+ +GNE+   + +    +L+PAM+ +  AL AA L  ++V+T  S  IL    PPS G F  G        +++F  +T +P M N YPY  + + P  ++  YALF
Sbjct:    1 PPSVESIGVCYGMSANNLPAASTVVSMFKFNG-IKSMRLYAPNQAALQAVGGTGINVVVGAPNDVLSNLAASPAAAASWVKSNIQAY-PKVSFRYVCVGNEVAGGATR----NLVPAMKNVHGALVAAGLGHIKVTTSVSQAILGVFSPPSAGSF-TGEAAAFMGPVVQFLARTNAPLMANIYPYLAWAYNPSAMDMGYALF 195          
BLAST of FC875652 vs. ExPASy Swiss-Prot
Match: E13G_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform GI9 OS=Nicotiana tabacum GN=PR2 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.997e-23
Identity = 71/199 (35.68%), Postives = 104/199 (52.26%), Query Frame = 1
Query:   76 ADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPAAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPYFGFKPQT----LNYALF 657
            A SIGV YG  ANNLP  Q V N L     I ++++++ +     A   +NI + + V   D+ +L     A  WV +NI+ H P   F+YI +GNE+   ++      + PAM+ + +AL AA L   ++VST    GIL+ + PP    FR  ++  I   I++F  Q   P + N YPYFG    T    L+YALF
Sbjct:   29 AQSIGVCYGKHANNLPSDQDVIN-LYNANGIRKMRIYNPDTNVFNALRGSNIEIILDVPLQDLQSLTDPSRANGWVQDNIINHFPDVKFKYIAVGNEVSPGNNGQYAPFVAPAMQNVYNALAAAGLQDQIKVSTATYSGILANTYPPKDSIFRGEFNSFI-NPIIQFLVQHNLPLLANVYPYFGHIFNTADVPLSYALF 225          
BLAST of FC875652 vs. ExPASy Swiss-Prot
Match: E13B_TOBAC (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Nicotiana tabacum PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 6.997e-23
Identity = 73/208 (35.10%), Postives = 111/208 (53.37%), Query Frame = 1
Query:   55 NAITPSAADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAK-LPAAQSWVANNILPHHPQTIFRYIVLGNEIL-ATSDKVLIASLLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPYFGFKPQ----TLNYALF 657
            ++I  + A SIGV YG + NNLP   +V    K++  I R++L+D N   L+A   +NI V + + N D+  +A  +  A+ WV  N+    P    +YI +GNEI   T    L + L PAM  +  A+  A L ++++VST   + ++  S PPS G FR    R     I+ F R T++P +VN YPYF +       +L Y+LF
Sbjct:   26 SSIDIAGAQSIGVCYGMLGNNLPNHWEVIQLYKSRN-IGRLRLYDPNHGALQALKGSNIEVMLGLPNSDVKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSYLTSFLTPAMVNIYKAIGEAGLGNNIKVSTSVDMTLIGNSYPPSQGSFRNDA-RWFTDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYSLF 231          
BLAST of FC875652 vs. ExPASy Swiss-Prot
Match: E13F_TOBAC (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform GLB OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.138e-23
Identity = 73/208 (35.10%), Postives = 110/208 (52.88%), Query Frame = 1
Query:   55 NAITPSAADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAK-LPAAQSWVANNILPHHPQTIFRYIVLGNEIL-ATSDKVLIASLLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPYFGFKPQ----TLNYALF 657
            + I  + A SIGV YG + NNLP   +V    K++  I R++L+D N   L+A   +NI V + + N D+  +A  +  A+ WV  N+    P    +YI +GNEI   T    L + L PAM  +  A+  A L ++++VST   + ++  S PPS G FR    R     I+ F R T++P +VN YPYF +       +L Y+LF
Sbjct:   25 STIEIAGAQSIGVCYGMLGNNLPNHWEVIQLYKSRN-IGRLRLYDPNHGALQALKGSNIEVMLGLPNSDVKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSYLTSFLTPAMVNIYKAIGEAGLGNNIKVSTSVDMTLIGNSYPPSQGSFRNDA-RWFTDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYSLF 230          
BLAST of FC875652 vs. ExPASy Swiss-Prot
Match: E13A_SOYBN (Glucan endo-1,3-beta-glucosidase OS=Glycine max PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.036e-22
Identity = 68/197 (34.52%), Postives = 103/197 (52.28%), Query Frame = 1
Query:   88 GVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPA-AQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLSS-VQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPYFGF----KPQTLNYALFK 660
            GV YG + NNLP PQ+V   L  Q  I R++++  +PE L A   +NI + + + N ++  LA     A  WV +NI  +     FRY+ +GNE+    +      L+PA+  ++ A+  A L + V+VST    G L+ S PPS G F+  Y       ++ F     +P MVN Y YF +    K  +L+YALF+
Sbjct:   35 GVCYGRLGNNLPTPQEVVA-LYNQANIRRMRIYGPSPEVLEALRGSNIELLLDIPNDNLRNLASSQDNANKWVQDNIKNYANNVRFRYVSVGNEV--KPEHSFAQFLVPALENIQRAISNAGLGNQVKVSTAIDTGALAESFPPSKGSFKSDYRGAYLDGVIRFLVNNNAPLMVNVYSYFAYTANPKDISLDYALFR 228          
The following BLAST results are available for this feature:
BLAST of FC875652 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
E132_ARATH2.405e-2334.83Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis ... [more]
E13B_NICPL3.141e-2335.10Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E13B_HEVBR3.141e-2336.36Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E13E_TOBAC4.102e-2335.10Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E13A_HORVU5.357e-2333.50Glucan endo-1,3-beta-glucosidase GI OS=Hordeum vul... [more]
GUB2_HORVU6.997e-2336.63Lichenase-2 (Fragment) OS=Hordeum vulgare PE=1 SV=... [more]
E13G_TOBAC6.997e-2335.68Glucan endo-1,3-beta-glucosidase, acidic isoform G... [more]
E13B_TOBAC6.997e-2335.10Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E13F_TOBAC9.138e-2335.10Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E13A_SOYBN2.036e-2234.52Glucan endo-1,3-beta-glucosidase OS=Glycine max PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31401C12EF CTVClemen1 Citrus clementina cDNA clone C31401C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875652 ID=FC875652; Name=FC875652; organism=Citrus clementina; type=EST; length=681bp
ACTGTTACTAAACTCTCTCAATTCCTCCTCTTCCTCTTCCTCTCCCTGTC
TTGCAACGCCATCACCCCCTCCGCCGCTGACTCCATCGGAGTCAACTACG
GCGCCATCGCCAACAACCTCCCGCCACCTCAGCAAGTAGCCAATTTCCTC
AAAACCCAAACCACCATAGACCGCGTCAAGCTCTTCGACGCCAACCCCGA
ATTCCTCCGCGCCTTCGCCCACACAAACATCCCCGTCACCGTCACAGTCG
GCAACGGCGACATACCTGCCCTCGCAAAACTCCCCGCCGCCCAGTCCTGG
GTCGCTAACAACATCCTGCCGCATCACCCCCAGACCATCTTCAGATACAT
CGTCCTCGGCAACGAAATCTTGGCCACGTCGGATAAAGTCCTCATCGCTT
CTCTCCTGCCCGCCATGAGAACTCTTAAATCAGCTCTCGATGCTGCCAAT
CTGAGCAGCGTCCAGGTGTCGACACCTCATTCCCTGGGGATTTTATCAAC
CTCTGAGCCGCCGAGTACCGGAAGGTTCCGTAAAGGTTACGATAGGCTTA
TCTTTGCTAGGATTCTCGAGTTCCACAGACAGACTAAATCCCCGTTTATG
GTTAACCCCTACCCGTATTTTGGGTTCAAGCCTCAGACGCTCAACTACGC
CTTGTTTAAACCAACGCCGGCGTTTTTGATC
back to top