FC875652

Overview
NameFC875652
Unique NameFC875652
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15392 contig Ccv1_Contig15392:30..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875652 vs. ExPASy Swiss-Prot
Match: E13F_HORVU (Putative glucan endo-1,3-beta-glucosidase GVI (Fragment) OS=Hordeum vulgare PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.014e-21
Identity = 69/209 (33.01%), Postives = 104/209 (49.76%), Query Frame = 1
Query:   70 SAADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAK-LPAAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLSSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPYFGFKPQ----TLNYALFKPTPAFLI 681
            +  + IGVNYG + ++LP P +V    K     D V++F  +   L A  ++ + V +   N D+  LA     A SWV + + P      FRYI  GNE++      L+   LPAM+ L++AL AA L SV V+T  +  +L TS PPS G F +     +   I+     + +P +VN YPYF +        L+YAL   + A  +
Sbjct:    2 AGVEGIGVNYGMMGSDLPSPDKVVALYKANNITD-VRIFHPDTNVLEALRNSGLGVVLGTLNSDLAPLASDASYAASWVHSYVQPFAGAVSFRYINAGNEVIPGESAALV---LPAMKNLEAALQAAGL-SVPVTTAMATSVLGTSYPPSQGTFSEAALPTV-GPIVSHLASSGTPLLVNVYPYFAYSADPSSVRLDYALLSSSAAVAV 204          
BLAST of FC875652 vs. ExPASy Swiss-Prot
Match: E13E_HORVU (Glucan endo-1,3-beta-glucosidase GV OS=Hordeum vulgare PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.117e-20
Identity = 67/200 (33.50%), Postives = 109/200 (54.50%), Query Frame = 1
Query:   88 GVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGD-IPALAKLPA-AQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPYFGFKPQ-----TLNYALFKP 663
            GV YG + +NLP    V    K++  I  +++++ + E L A   + I + + VG  D +  L + P+ A  WV +N+  ++P  + RYI +GNE+ A    +    +L AM+ + +AL +ANL SS++VST     +++ S PPS+G FR     +  AR L+    T +PF+ N YPYF ++        LNYA  +P
Sbjct:    6 GVCYGMVGDNLPSRSDVVQLYKSRN-IHAMRIYNPDQEALTALRGSGIFLILDVGGVDEVRRLGRDPSYAAGWVRSNVQAYYPDVLIRYIAVGNEVPAGDTGI----ILLAMQNVHNALASANLSSSIKVSTAVRFDVITNSFPPSSGVFRDPSGLVPIARFLD---STGAPFLANVYPYFAYRDDRGQNIRLNYATLQP 197          
BLAST of FC875652 vs. ExPASy Swiss-Prot
Match: E132_SOLTU (Glucan endo-1,3-beta-glucosidase, basic isoform 2 OS=Solanum tuberosum GN=GLUB2 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.459e-20
Identity = 68/198 (34.34%), Postives = 103/198 (52.02%), Query Frame = 1
Query:   85 IGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAK-LPAAQSWVANNILPHHPQTIFRYIVLGNEIL-ATSDKVLIASLLPAMRTLKSALDAANLSS-VQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPYFGFKPQ----TLNYALF 657
            +GV YG + NNLP   +V    K++  I R++L+D N   L A   +NI V + + N D+  +A  +  A+ WV  N+    P    +YI +GNEI   T    L +  +PA+  +  A+  A L + ++VST   + ++  S PPS G FR    R     I+ F R T++P +VN YPYF +       +L YALF
Sbjct:   27 LGVCYGMMGNNLPSHSEVIQLYKSRN-IGRLRLYDPNQGALNALRGSNIEVILGLPNVDVKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSSLTSFQVPALVNIYKAVGEAGLGNDIKVSTSVDMTLIGNSYPPSQGSFRNDV-RWFTDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYALF 222          
BLAST of FC875652 vs. ExPASy Swiss-Prot
Match: E131_SOLTU (Glucan endo-1,3-beta-glucosidase, basic isoform 1 (Fragment) OS=Solanum tuberosum GN=GLUB1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.905e-20
Identity = 68/198 (34.34%), Postives = 103/198 (52.02%), Query Frame = 1
Query:   85 IGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAK-LPAAQSWVANNILPHHPQTIFRYIVLGNEIL-ATSDKVLIASLLPAMRTLKSALDAANLSS-VQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPYFGFKPQ----TLNYALF 657
            +GV YG + NNLP   +V    K++  I R++L+D N   L A   +NI V + + N D+  +A  +  A+ WV  N+    P    +YI +GNEI   T    L +  +PA+  +  A+  A L + ++VST   + ++  S PPS G FR    R     I+ F R T++P +VN YPYF +       +L YALF
Sbjct:    1 LGVCYGMMGNNLPSHSEVIQLYKSRN-IGRLRLYDPNHGALNALRGSNIEVILGLPNVDVKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSSLTSFQVPALVNIYKAVGEAGLGNDIKVSTSVDMTLIGNSYPPSQGSFRNDV-RWFTDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYALF 196          
BLAST of FC875652 vs. ExPASy Swiss-Prot
Match: E13C_HORVU (Glucan endo-1,3-beta-glucosidase GIII OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.250e-20
Identity = 71/203 (34.98%), Postives = 108/203 (53.20%), Query Frame = 1
Query:   73 AADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLP-AAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLSSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFAR-ILEFHRQTKSPFMVNPYPYFGFKPQ----TLNYALFKP 663
            A  SIGV  G + NNLP P  V    +++  ID +++++   + L A + T I V + VG   +P+LA  P AA +WV  N+    P   FRYI + NE++ ++ +   +++LPAMR ++ AL AA  S ++VST     + + + PPS G      D+  F R IL F  +   P + N YPYF +K       L +A F P
Sbjct:   22 AVHSIGVCNGVLGNNLPAPSDVVTLYRSK-RIDAMRIYEPESKVLTALSGTGIAVLMDVGPA-LPSLASSPSAAAAWVKANV-SSFPGVSFRYIAVRNEVMDSAGQ---STILPAMRNVQRALAAAG-SPIKVSTSVRFDVFNNTSPPSNGVLA---DKSGFLRPILNFLARPARPLLANVYPYFAYKGNPRDIQLTFATFVP 214          
BLAST of FC875652 vs. ExPASy Swiss-Prot
Match: E13B_PHAVU (Glucan endo-1,3-beta-glucosidase, basic isoform OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.250e-20
Identity = 67/198 (33.84%), Postives = 101/198 (51.01%), Query Frame = 1
Query:   85 IGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALA-KLPAAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIAS-LLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPYFGF----KPQTLNYALF 657
            IGV YG + NNLP   +V N  ++   I R++L+D N   L+A  ++ I + + V N D+  LA     A+ WV  N+L   P    +YI +GNE+         A  +LPA++ +  A+ A  L   ++VST   + ++  S PPS G FR G  R     I+ +     +P  VN YPYF +    +  +L YALF
Sbjct:    2 IGVCYGMMGNNLPSANEVINLYRSNN-IRRMRLYDPNQAALQALRNSGIELILGVPNSDLQGLATNADTARQWVQRNVLNFWPSVKIKYIAVGNEVSPVGGSSWYAQYVLPAVQNVYQAVRAQGLHDQIKVSTAIDMTLIGNSYPPSQGSFR-GDVRSYLDPIIGYLLYASAPLHVNVYPYFSYSGNPRDISLPYALF 197          
BLAST of FC875652 vs. ExPASy Swiss-Prot
Match: E13A_ARATH (Glucan endo-1,3-beta-glucosidase, acidic isoform OS=Arabidopsis thaliana GN=BG2 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.250e-20
Identity = 68/199 (34.17%), Postives = 101/199 (50.75%), Query Frame = 1
Query:   76 ADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPA-AQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLSSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPYFGFKPQT----LNYALF 657
            A  IGV YG + + LP P  V    K Q  I R++L+  +P  L A   ++I + + V + D+  LA     A  WV  N+  +     FRYI +GNE+  +        LL AM+ +++A+  A L  V+VST  +    + + PPS GRFR  Y   +   ++ F    +SP +VN YPYF +   T    L+YALF
Sbjct:   29 AGQIGVCYGMLGDTLPSPSDVVALYKQQN-IQRMRLYGPDPGALAALRGSDIELILDVPSSDLERLASSQTEADKWVQENVQSYRDGVRFRYINVGNEVKPSVG----GFLLQAMQNIENAVSGAGLE-VKVSTAIATDTTTDTSPPSQGRFRDEYKSFL-EPVIGFLASKQSPLLVNLYPYFSYMGDTANIHLDYALF 220          
BLAST of FC875652 vs. ExPASy Swiss-Prot
Match: E13B_SOLLC (Glucan endo-1,3-beta-glucosidase B OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.544e-20
Identity = 68/198 (34.34%), Postives = 102/198 (51.52%), Query Frame = 1
Query:   85 IGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAK-LPAAQSWVANNILPHHPQTIFRYIVLGNEIL-ATSDKVLIASLLPAMRTLKSALDAANLSS-VQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPYFGFKPQ----TLNYALF 657
            IGV YG + NNLP   +V    K++  I R++L+D N   L A   +NI V + + N D+  ++  +  A+ WV  N+    P    +YI +GNEI   T    L    +PA+  +  A+  A L + ++VST   + ++  S PPS G FR    R     I+ F R T++P +VN YPYF +       +L YALF
Sbjct:   27 IGVCYGMMGNNLPSHSEVIQLYKSRN-IRRLRLYDPNHGALNALRGSNIEVILGLPNVDVKHISSGMEHARWWVQKNVRDFWPHVKIKYIAVGNEISPVTGTSNLAPFQVPALVNIYKAIGEAGLGNDIKVSTSVDMTLIGNSYPPSQGSFRNDV-RWFTDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYALF 222          
BLAST of FC875652 vs. ExPASy Swiss-Prot
Match: E13H_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform PR-Q' OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.241e-20
Identity = 67/196 (34.18%), Postives = 103/196 (52.55%), Query Frame = 1
Query:   88 GVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPA-AQSWVANNILPHHPQTIFRYIVLGNEILATSD-KVLIASLLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPYFGFKPQT---LNYALF 657
            GV YG   N LP P  V + L  +  I R++++D +   L A   +NI + + V N D+  +A   A A +WV NN+  ++    FRYI +GNE+   ++    +  LL AMR +++A+  A L + ++VST    G+ + + PPS GRF+    R     I+ F    ++P +VN YPYF         L YALF
Sbjct:   27 GVCYGRQGNGLPSPADVVS-LCNRNNIRRMRIYDPDQPTLEALRGSNIELMLGVPNPDLENVAASQANADTWVQNNVR-NYGNVKFRYIAVGNEVSPLNENSKYVPVLLNAMRNIQTAISGAGLGNQIKVSTAIETGLTTDTSPPSNGRFKDDV-RQFIEPIINFLVTNRAPLLVNLYPYFAIANNADIKLEYALF 219          
BLAST of FC875652 vs. ExPASy Swiss-Prot
Match: E13B_PEA (Glucan endo-1,3-beta-glucosidase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.457e-20
Identity = 64/206 (31.07%), Postives = 101/206 (49.03%), Query Frame = 1
Query:   61 ITPSAADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALA-KLPAAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIAS-LLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPYFGF----KPQTLNYALF 657
            + P+    IG+ YG + NNLPP  +V    K    I R++L+D N   L A   + I + + + N D+  LA    +A+ WV  N+L  +P    +YI +GNE+        +A  +LPA + +  A+ A  L   ++V+T   + ++  S PPS G FR    R      + +     +P +VN YPYF      +  +L YALF
Sbjct:   26 LIPTTDAQIGICYGMMGNNLPPANEVIALYKANN-IKRMRLYDPNQPALNALRDSGIELILGIPNSDLQTLATNQDSARQWVQRNVLNFYPSVKIKYIAVGNEVSPVGGSSWLAQYVLPATQNVYQAIRAQGLHDQIKVTTAIDMTLIGNSFPPSKGSFRSDV-RSYLDPFIGYLVYAGAPLLVNVYPYFSHIGNPRDISLPYALF 229          
The following BLAST results are available for this feature:
BLAST of FC875652 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
E13F_HORVU5.014e-2133.01Putative glucan endo-1,3-beta-glucosidase GVI (Fra... [more]
E13E_HORVU1.117e-2033.50Glucan endo-1,3-beta-glucosidase GV OS=Hordeum vul... [more]
E132_SOLTU1.459e-2034.34Glucan endo-1,3-beta-glucosidase, basic isoform 2 ... [more]
E131_SOLTU1.905e-2034.34Glucan endo-1,3-beta-glucosidase, basic isoform 1 ... [more]
E13C_HORVU3.250e-2034.98Glucan endo-1,3-beta-glucosidase GIII OS=Hordeum v... [more]
E13B_PHAVU3.250e-2033.84Glucan endo-1,3-beta-glucosidase, basic isoform OS... [more]
E13A_ARATH3.250e-2034.17Glucan endo-1,3-beta-glucosidase, acidic isoform O... [more]
E13B_SOLLC5.544e-2034.34Glucan endo-1,3-beta-glucosidase B OS=Solanum lyco... [more]
E13H_TOBAC7.241e-2034.18Glucan endo-1,3-beta-glucosidase, acidic isoform P... [more]
E13B_PEA9.457e-2031.07Glucan endo-1,3-beta-glucosidase OS=Pisum sativum ... [more]

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Properties
Property NameValue
Genbank descriptionC31401C12EF CTVClemen1 Citrus clementina cDNA clone C31401C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875652 ID=FC875652; Name=FC875652; organism=Citrus clementina; type=EST; length=681bp
ACTGTTACTAAACTCTCTCAATTCCTCCTCTTCCTCTTCCTCTCCCTGTC
TTGCAACGCCATCACCCCCTCCGCCGCTGACTCCATCGGAGTCAACTACG
GCGCCATCGCCAACAACCTCCCGCCACCTCAGCAAGTAGCCAATTTCCTC
AAAACCCAAACCACCATAGACCGCGTCAAGCTCTTCGACGCCAACCCCGA
ATTCCTCCGCGCCTTCGCCCACACAAACATCCCCGTCACCGTCACAGTCG
GCAACGGCGACATACCTGCCCTCGCAAAACTCCCCGCCGCCCAGTCCTGG
GTCGCTAACAACATCCTGCCGCATCACCCCCAGACCATCTTCAGATACAT
CGTCCTCGGCAACGAAATCTTGGCCACGTCGGATAAAGTCCTCATCGCTT
CTCTCCTGCCCGCCATGAGAACTCTTAAATCAGCTCTCGATGCTGCCAAT
CTGAGCAGCGTCCAGGTGTCGACACCTCATTCCCTGGGGATTTTATCAAC
CTCTGAGCCGCCGAGTACCGGAAGGTTCCGTAAAGGTTACGATAGGCTTA
TCTTTGCTAGGATTCTCGAGTTCCACAGACAGACTAAATCCCCGTTTATG
GTTAACCCCTACCCGTATTTTGGGTTCAAGCCTCAGACGCTCAACTACGC
CTTGTTTAAACCAACGCCGGCGTTTTTGATC
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