FC875652

Overview
NameFC875652
Unique NameFC875652
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15392 contig Ccv1_Contig15392:30..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875652 vs. ExPASy Swiss-Prot
Match: E13B_VITVI (Glucan endo-1,3-beta-glucosidase OS=Vitis vinifera GN=GSVIVT00022223001 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.107e-19
Identity = 60/168 (35.71%), Postives = 91/168 (54.17%), Query Frame = 1
Query:  175 VKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAK-LPAAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIAS-LLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPYFGFKPQT----LNYALF 657
            ++++D N + L+A   + I + + V N  + +LA    AA +WV NN++ +     FRYI +GNE+L T      A  +LPAM+ ++SA+ +A L   ++VST     +L TS PPS G F       I   I+ F  +  SP + N YPYF +   T    L+YALF
Sbjct:    1 MRIYDPNSDTLQALKGSGIELILDVPNTSLQSLASDASAASTWVQNNVVNYASDVKFRYIAVGNEVLPTGSNAQYAQYVLPAMKNVQSAITSAGLQGQIKVSTATYSSVLGTSYPPSAGSFSSDASSFI-NPIISFLAENGSPLLANIYPYFSYTGDTQNIRLDYALF 167          
BLAST of FC875652 vs. ExPASy Swiss-Prot
Match: E13B_MAIZE (Glucan endo-1,3-beta-glucosidase, acidic isoform OS=Zea mays PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.005e-19
Identity = 73/207 (35.27%), Postives = 106/207 (51.21%), Query Frame = 1
Query:   58 AITPSAADSIGVNYGAIANNLPPPQQVANFLKTQ-TTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLP-AAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPYFGFKPQ----TLNYALF 657
            A  P+   SIGV YG   +NLPP   V    ++    + R+   DANP  L A + T+I + + V N D+ +LA  P AA +WV +N+     ++  RYI +GNE+          S+LPAM+ L +AL  A L  S++VST     + +   PPS G F +GY     A   ++ + T +P + N YPYF +        L YALF
Sbjct:   21 AAIPTGVQSIGVCYGVNGDNLPPASDVVQLYQSNGINLLRIYFPDANP--LNALSGTSIGLIMDVPNTDLASLASDPSAAAAWVQSNVQASR-RSACRYIAVGNEVSGGD----TGSILPAMQNLNAALANAGLGGSIKVSTAVQSDV-TQGFPPSQGTFSQGY----MAPSRQYLQSTGAPLLSNVYPYFSYVGNPAQIDLKYALF 215          
BLAST of FC875652 vs. ExPASy Swiss-Prot
Match: E139_ARATH (Glucan endo-1,3-beta-glucosidase 9 OS=Arabidopsis thaliana GN=At5g58480 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.366e-18
Identity = 68/213 (31.92%), Postives = 117/213 (54.93%), Query Frame = 1
Query:   58 AITPSAADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPAL-AKLPAAQSWVANNILPHH---PQTIFRYIVLGNE-ILATSDKVLIASLLPAMRTLKSALDAANLSS-VQVSTPHSL-GILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPYFGF---KPQTLNYALFKPT 666
            ++T +   ++G+N+G  A++  PP +V   LK+   + +VKLFDA+P+ LRA + +NI VT+ + N  + +L A +  A+SWV +N+  +     +    Y+ +G E  L +        ++ A   +++AL  ANL++ V+V  P S    LS S  PS+G FR   ++ +   +L F  +  SPF V   P+  F   K  +L+++LFK T
Sbjct:   17 SLTGTTVRAVGINWGTEASHPLPPSKVVELLKSNGIV-KVKLFDADPKVLRALSGSNIGVTIGIQNSMLKSLNASVKVAESWVHDNVTRYFNGGNRVRIEYVAVGEEPFLQSYGNQYKPFVIGAAMNIQNALVKANLANEVKVVVPSSFDSFLSESGRPSSGHFRADLNKTMI-ELLSFLTKHHSPFFVTISPFLSFHQNKNISLDFSLFKET 227          
BLAST of FC875652 vs. ExPASy Swiss-Prot
Match: E136_ARATH (Glucan endo-1,3-beta-glucosidase 6 OS=Arabidopsis thaliana GN=At5g58090 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.783e-18
Identity = 71/209 (33.97%), Postives = 107/209 (51.20%), Query Frame = 1
Query:   58 AITPSAADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALA-KLPAAQSWVANNILPH--HPQTIFRYIVLGNE-ILATSDKVLIASLLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEP-PSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPYFGFKPQ---TLNYALF 657
            A+    A SIG N+G  A++  PP  V   L+ +  I +VKLFDA  + LRA   + I V V + N  +  LA  L AA+ WVA N+  H        RY+ +GNE  L+T +   +++  PA+R ++ A+  A L + V+V+ P +  +  +S   PS G FR    R +   I++F  +   PF VN YPY          ++YA F
Sbjct:   13 ALLCQRASSIGANWGTQASHPLPPDIVVRMLR-ENGIQKVKLFDAEYDTLRALGKSGIEVMVGIPNEMLATLASSLKAAEKWVAKNVSTHISTDNVNIRYVAVGNEPFLSTYNGSYLSTTFPALRNIQIAIIKAGLQNQVKVTCPLNADVYDSSTTFPSGGDFRANI-RDLMITIVKFLSENGGPFTVNIYPYISLYTNPDFPVDYAFF 219          
BLAST of FC875652 vs. ExPASy Swiss-Prot
Match: E133_SOLTU (Glucan endo-1,3-beta-glucosidase, basic isoform 3 (Fragment) OS=Solanum tuberosum GN=GLUB3 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.189e-18
Identity = 64/189 (33.86%), Postives = 97/189 (51.32%), Query Frame = 1
Query:  112 NNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAK-LPAAQSWVANNILPHHPQTIFRYIVLGNEIL-ATSDKVLIASLLPAMRTLKSALDAANLSS-VQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPYFGFKPQ----TLNYALF 657
            NNLP   +V    K++  I R++L+D N   L A   +NI V + + N D+  +A  +  A+ WV  N+    P    +YI +GNEI   T    L +  +PA+  +  A+  A L + ++VST   + ++  S PPS G FR    R     I+ F R T++P +VN YPYF +       +L YALF
Sbjct:    1 NNLPSHSEVIQLYKSRN-IGRLRLYDPNHGALNALRGSNIEVILGLPNVDVKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSSLTSFQVPALVNIYKAIGEAGLGNDIKVSTSVDMTLIGNSYPPSQGSFRNDV-RWFTDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYALF 187          
BLAST of FC875652 vs. ExPASy Swiss-Prot
Match: E135_ARATH (Glucan endo-1,3-beta-glucosidase 5 OS=Arabidopsis thaliana GN=At4g31140 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.719e-16
Identity = 62/186 (33.33%), Postives = 99/186 (53.23%), Query Frame = 1
Query:   79 DSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALA-KLPAAQSWVANNILPHHPQ--TIFRYIVLGNE-ILATSDKVLIASLLPAMRTLKSALDAANLSS-VQVSTPHSLGIL-STSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPY 618
            + IGVN+G+ A +  PP  V   L+ +  I +VKLF+A+   L+A + T I V V + N  +  LA  + AA+ WV+ N+  H        RY+ +GNE  L   +       LPA++ ++SA+  A L++ V+V+ P +  +  S S  PS G FR    R +   I++F     +PF +N YP+
Sbjct:   25 EGIGVNWGSQARHPLPPATVVRLLR-ENGIQKVKLFEADSAILKALSRTGIQVMVGIPNDLLAPLAGSVAAAERWVSQNVSAHVSSNGVDIRYVAVGNEPFLKAFNGTFEGITLPALQNIQSAIIKAGLATQVKVTVPLNADVYQSASNLPSDGDFRPEI-RDLMLNIVKFLSDNGAPFTINIYPF 208          
BLAST of FC875652 vs. ExPASy Swiss-Prot
Match: E138_ARATH (Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis thaliana GN=At1g64760 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.410e-15
Identity = 60/203 (29.56%), Postives = 104/203 (51.23%), Query Frame = 1
Query:   79 DSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPAAQSWVANNILPHH--PQTIFRYIVLGNE-ILATSDKVLIASLLPAMRTLKSALDAANL-SSVQVSTPHSLGILST--SEP-PSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPY---FGFKPQTLNYALF 657
            + +GVN+G +A +  PP+ V   LK    I++VKLFDA+   + A A + + V V + N  +  +     A+ WV  N+  ++        ++ +GNE  L + +   I    PA+  +++AL+ A L +SV+ + P +  +  +  S P PS GRFR      +  +I++F  +  +P  +N YP+   +G     LNYA F
Sbjct:   23 NGLGVNWGTMATHKLPPKTVVQMLK-DNNINKVKLFDADETTMGALAGSGLEVMVAIPNDQLKVMTSYDRAKDWVRKNVTRYNFDGGVNITFVAVGNEPFLKSYNGSFINLTFPALANIQNALNEAGLGNSVKATVPLNADVYDSPASNPVPSAGRFRPDIIGQM-TQIVDFLGKNNAPITINIYPFLSLYGNDDFPLNYAFF 223          
BLAST of FC875652 vs. ExPASy Swiss-Prot
Match: E13I_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform PR-N (Fragment) OS=Nicotiana tabacum GN=PRN PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.013e-15
Identity = 53/154 (34.42%), Postives = 80/154 (51.95%), Query Frame = 1
Query:  211 AFAHTNIPVTVTVGNGDIPALAKLPAAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPYFGFKPQT----LNYALF 657
            A   +NI + + V   D+ +L     A  WV +NI+ H P   F+YI +GN++   ++      + PAM+ + +AL AA L   ++VST    GIL+ + PP    FR  ++  I   I++F  Q   P + N YPYFG    T    L+YALF
Sbjct:    5 ALRGSNIEIILDVPLQDLQSLTDPSRANGWVQDNIINHFPDVKFKYIAVGNKVSPGNNGQYAPFVAPAMQNVYNALAAAGLQDQIKVSTATYSGILANTYPPKDSIFRGEFNSFI-NPIIQFLVQHNLPLLANVYPYFGHIFNTADVPLSYALF 157          
The following BLAST results are available for this feature:
BLAST of FC875652 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
E13B_VITVI2.107e-1935.71Glucan endo-1,3-beta-glucosidase OS=Vitis vinifera... [more]
E13B_MAIZE8.005e-1935.27Glucan endo-1,3-beta-glucosidase, acidic isoform O... [more]
E139_ARATH1.366e-1831.92Glucan endo-1,3-beta-glucosidase 9 OS=Arabidopsis ... [more]
E136_ARATH1.783e-1833.97Glucan endo-1,3-beta-glucosidase 6 OS=Arabidopsis ... [more]
E133_SOLTU5.189e-1833.86Glucan endo-1,3-beta-glucosidase, basic isoform 3 ... [more]
E135_ARATH3.719e-1633.33Glucan endo-1,3-beta-glucosidase 5 OS=Arabidopsis ... [more]
E138_ARATH2.410e-1529.56Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis ... [more]
E13I_TOBAC7.013e-1534.42Glucan endo-1,3-beta-glucosidase, acidic isoform P... [more]

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Properties
Property NameValue
Genbank descriptionC31401C12EF CTVClemen1 Citrus clementina cDNA clone C31401C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875652 ID=FC875652; Name=FC875652; organism=Citrus clementina; type=EST; length=681bp
ACTGTTACTAAACTCTCTCAATTCCTCCTCTTCCTCTTCCTCTCCCTGTC
TTGCAACGCCATCACCCCCTCCGCCGCTGACTCCATCGGAGTCAACTACG
GCGCCATCGCCAACAACCTCCCGCCACCTCAGCAAGTAGCCAATTTCCTC
AAAACCCAAACCACCATAGACCGCGTCAAGCTCTTCGACGCCAACCCCGA
ATTCCTCCGCGCCTTCGCCCACACAAACATCCCCGTCACCGTCACAGTCG
GCAACGGCGACATACCTGCCCTCGCAAAACTCCCCGCCGCCCAGTCCTGG
GTCGCTAACAACATCCTGCCGCATCACCCCCAGACCATCTTCAGATACAT
CGTCCTCGGCAACGAAATCTTGGCCACGTCGGATAAAGTCCTCATCGCTT
CTCTCCTGCCCGCCATGAGAACTCTTAAATCAGCTCTCGATGCTGCCAAT
CTGAGCAGCGTCCAGGTGTCGACACCTCATTCCCTGGGGATTTTATCAAC
CTCTGAGCCGCCGAGTACCGGAAGGTTCCGTAAAGGTTACGATAGGCTTA
TCTTTGCTAGGATTCTCGAGTTCCACAGACAGACTAAATCCCCGTTTATG
GTTAACCCCTACCCGTATTTTGGGTTCAAGCCTCAGACGCTCAACTACGC
CTTGTTTAAACCAACGCCGGCGTTTTTGATC
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