FC875653
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875653 vs. ExPASy Swiss-Prot
Match: HNRPF_BOVIN (Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus GN=HNRNPF PE=2 SV=3) HSP 1 Score: 71.633 bits (174), Expect = 3.935e-12 Identity = 50/154 (32.47%), Postives = 78/154 (50.65%), Query Frame = 2 Query: 206 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN 652 VV+LRGLP+ C+ DV F I D V F++ + + +GEAF L V AL+++R++MG RY+EVF+S R E + + S D+A + G +RLRGLPF K++I+ FF + + I + ++ Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHRTEMDWVLKH------------------SGPNSADTA-NDGFVRLRGLPFGCTKEEIIQFFSGLEIVPNGITLPVD 146
BLAST of FC875653 vs. ExPASy Swiss-Prot
Match: ESRP2_CHICK (Epithelial splicing regulatory protein 2 OS=Gallus gallus GN=ESRP2 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.140e-12 Identity = 44/136 (32.35%), Postives = 76/136 (55.88%), Query Frame = 2 Query: 206 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDF 604 V+R RGLP+ ++ D+A FF GL+I L ++ + GEA Q D AL+R++ +MG RY+EV+++ +E+ K + GG+ + + K++ V I+R+RGLPF+A ++D++ F Sbjct: 227 VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFVNSEQRDLALERHKHHMGSRYIEVYKATGEEFLK--------IAGGTSNE-----VAQFLSKENQV---IIRMRGLPFTATQEDVLGF 346
BLAST of FC875653 vs. ExPASy Swiss-Prot
Match: SYM2_CAEEL (RNA-binding protein sym-2 OS=Caenorhabditis elegans GN=sym-2 PE=2 SV=3) HSP 1 Score: 70.8626 bits (172), Expect = 6.712e-12 Identity = 46/153 (30.07%), Postives = 79/153 (51.63%), Query Frame = 2 Query: 206 VVRLRGLPFDCTEVDVAEFFHGLDIVD-VLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF--VLSEDSIHITMN 652 +VR+RGLP+DCT+ + FF L + D +LF+ + + + TG+AF L ++RQ +G+RY+E+F+S E + + ++ SP + ++ KD +RLRGLP+ A I+ F DF ++ +H+ N Sbjct: 282 IVRMRGLPYDCTDAQIRTFFEPLKLTDKILFITRTDGRPTGDAFVQFETEEDAQQGLLKHRQVIGQRYIELFKSTAAEVQQVVKR--CNLINSSPAVANAVEAPEEKKKD------CVRLRGLPYEATVQHIVTFLGDFATMVKFQGVHMVYN 426
BLAST of FC875653 vs. ExPASy Swiss-Prot
Match: RBM12_PONAB (RNA-binding protein 12 OS=Pongo abelii GN=RBM12 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.331e-11 Identity = 58/174 (33.33%), Postives = 82/174 (47.13%), Query Frame = 2 Query: 185 SQPPPFPV------VRLRGLPFDCTEVDVAEFFHGL--DIVDVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS------PHRSIPRAKSHDEGKDSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 643 S P P+ V + G+PF E DV +FFHGL D V +L H +NN G P AL+RNR M +RYVEV + +++ A + G P +++PR+KS K S + + L+GLPF A ++DFFK + EDSI+I Sbjct: 292 SSVKPLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYI 462
BLAST of FC875653 vs. ExPASy Swiss-Prot
Match: RBM12_MACMU (RNA-binding protein 12 OS=Macaca mulatta GN=RBM12 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.331e-11 Identity = 58/174 (33.33%), Postives = 82/174 (47.13%), Query Frame = 2 Query: 185 SQPPPFPV------VRLRGLPFDCTEVDVAEFFHGL--DIVDVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS------PHRSIPRAKSHDEGKDSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 643 S P P+ V + G+PF E DV +FFHGL D V +L H +NN G P AL+RNR M +RYVEV + +++ A + G P +++PR+KS K S + + L+GLPF A ++DFFK + EDSI+I Sbjct: 292 SSVKPLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQSHPPPQTLPRSKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYI 462
BLAST of FC875653 vs. ExPASy Swiss-Prot
Match: RBM12_HUMAN (RNA-binding protein 12 OS=Homo sapiens GN=RBM12 PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.331e-11 Identity = 58/174 (33.33%), Postives = 82/174 (47.13%), Query Frame = 2 Query: 185 SQPPPFPV------VRLRGLPFDCTEVDVAEFFHGL--DIVDVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS------PHRSIPRAKSHDEGKDSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 643 S P P+ V + G+PF E DV +FFHGL D V +L H +NN G P AL+RNR M +RYVEV + +++ A + G P +++PR+KS K S + + L+GLPF A ++DFFK + EDSI+I Sbjct: 292 SSVKPLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYI 462
BLAST of FC875653 vs. ExPASy Swiss-Prot
Match: HNRH1_MOUSE (Heterogeneous nuclear ribonucleoprotein H OS=Mus musculus GN=Hnrnph1 PE=1 SV=3) HSP 1 Score: 68.5514 bits (166), Expect = 3.331e-11 Identity = 45/154 (29.22%), Postives = 74/154 (48.05%), Query Frame = 2 Query: 206 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN 652 VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E + K + G +RLRGLPF K++I+ FF + + I + ++ Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVL-------------------KHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVD 146
BLAST of FC875653 vs. ExPASy Swiss-Prot
Match: HNRH1_HUMAN (Heterogeneous nuclear ribonucleoprotein H OS=Homo sapiens GN=HNRNPH1 PE=1 SV=4) HSP 1 Score: 68.5514 bits (166), Expect = 3.331e-11 Identity = 45/154 (29.22%), Postives = 74/154 (48.05%), Query Frame = 2 Query: 206 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN 652 VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E + K + G +RLRGLPF K++I+ FF + + I + ++ Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVL-------------------KHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVD 146
BLAST of FC875653 vs. ExPASy Swiss-Prot
Match: ESRP1_XENTR (Epithelial splicing regulatory protein 1 OS=Xenopus tropicalis GN=esrp1 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.331e-11 Identity = 42/137 (30.66%), Postives = 75/137 (54.74%), Query Frame = 2 Query: 206 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 607 ++R RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R+RGLPF+A ++++ FF Sbjct: 227 IIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGNRYIEVYKATGEDFLK--------IAGGTSNE-----VAQFLSKENQV---IVRMRGLPFTATAEEVLAFF 347
BLAST of FC875653 vs. ExPASy Swiss-Prot
Match: ESRP1_XENLA (Epithelial splicing regulatory protein 1 OS=Xenopus laevis GN=esrp1 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.331e-11 Identity = 42/137 (30.66%), Postives = 75/137 (54.74%), Query Frame = 2 Query: 206 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 607 ++R RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R+RGLPF+A ++++ FF Sbjct: 227 IIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGNRYIEVYKATGEDFLK--------IAGGTSNE-----VAQFLSKENQV---IVRMRGLPFTATAEEVLAFF 347 The following BLAST results are available for this feature:
BLAST of FC875653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 30
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875653 ID=FC875653; Name=FC875653; organism=Citrus clementina; type=EST; length=653bpback to top |