FC875653

Overview
NameFC875653
Unique NameFC875653
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length653
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14404 contig Ccv1_Contig14404:82..734. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875653 vs. ExPASy Swiss-Prot
Match: HNRPF_BOVIN (Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus GN=HNRNPF PE=2 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 3.935e-12
Identity = 50/154 (32.47%), Postives = 78/154 (50.65%), Query Frame = 2
Query:  206 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN 652
            VV+LRGLP+ C+  DV  F     I D    V F++ +  + +GEAF  L     V  AL+++R++MG RY+EVF+S R E    + +                  S     D+A + G +RLRGLPF   K++I+ FF    +  + I + ++
Sbjct:   12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHRTEMDWVLKH------------------SGPNSADTA-NDGFVRLRGLPFGCTKEEIIQFFSGLEIVPNGITLPVD 146          
BLAST of FC875653 vs. ExPASy Swiss-Prot
Match: ESRP2_CHICK (Epithelial splicing regulatory protein 2 OS=Gallus gallus GN=ESRP2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.140e-12
Identity = 44/136 (32.35%), Postives = 76/136 (55.88%), Query Frame = 2
Query:  206 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDF 604
            V+R RGLP+  ++ D+A FF GL+I      L ++   +  GEA        Q D AL+R++ +MG RY+EV+++  +E+ K        + GG+ +       +    K++ V   I+R+RGLPF+A ++D++ F
Sbjct:  227 VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFVNSEQRDLALERHKHHMGSRYIEVYKATGEEFLK--------IAGGTSNE-----VAQFLSKENQV---IIRMRGLPFTATQEDVLGF 346          
BLAST of FC875653 vs. ExPASy Swiss-Prot
Match: SYM2_CAEEL (RNA-binding protein sym-2 OS=Caenorhabditis elegans GN=sym-2 PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 6.712e-12
Identity = 46/153 (30.07%), Postives = 79/153 (51.63%), Query Frame = 2
Query:  206 VVRLRGLPFDCTEVDVAEFFHGLDIVD-VLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF--VLSEDSIHITMN 652
            +VR+RGLP+DCT+  +  FF  L + D +LF+ + + + TG+AF            L ++RQ +G+RY+E+F+S   E  + +     ++   SP  +       ++ KD       +RLRGLP+ A    I+ F  DF  ++    +H+  N
Sbjct:  282 IVRMRGLPYDCTDAQIRTFFEPLKLTDKILFITRTDGRPTGDAFVQFETEEDAQQGLLKHRQVIGQRYIELFKSTAAEVQQVVKR--CNLINSSPAVANAVEAPEEKKKD------CVRLRGLPYEATVQHIVTFLGDFATMVKFQGVHMVYN 426          
BLAST of FC875653 vs. ExPASy Swiss-Prot
Match: RBM12_PONAB (RNA-binding protein 12 OS=Pongo abelii GN=RBM12 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.331e-11
Identity = 58/174 (33.33%), Postives = 82/174 (47.13%), Query Frame = 2
Query:  185 SQPPPFPV------VRLRGLPFDCTEVDVAEFFHGL--DIVDVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS------PHRSIPRAKSHDEGKDSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 643
            S   P P+      V + G+PF   E DV +FFHGL  D V +L  H  +NN   G        P     AL+RNR  M +RYVEV  +  +++  A  +       G       P +++PR+KS    K S   +       + L+GLPF A    ++DFFK   + EDSI+I
Sbjct:  292 SSVKPLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYI 462          
BLAST of FC875653 vs. ExPASy Swiss-Prot
Match: RBM12_MACMU (RNA-binding protein 12 OS=Macaca mulatta GN=RBM12 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.331e-11
Identity = 58/174 (33.33%), Postives = 82/174 (47.13%), Query Frame = 2
Query:  185 SQPPPFPV------VRLRGLPFDCTEVDVAEFFHGL--DIVDVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS------PHRSIPRAKSHDEGKDSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 643
            S   P P+      V + G+PF   E DV +FFHGL  D V +L  H  +NN   G        P     AL+RNR  M +RYVEV  +  +++  A  +       G       P +++PR+KS    K S   +       + L+GLPF A    ++DFFK   + EDSI+I
Sbjct:  292 SSVKPLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQSHPPPQTLPRSKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYI 462          
BLAST of FC875653 vs. ExPASy Swiss-Prot
Match: RBM12_HUMAN (RNA-binding protein 12 OS=Homo sapiens GN=RBM12 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.331e-11
Identity = 58/174 (33.33%), Postives = 82/174 (47.13%), Query Frame = 2
Query:  185 SQPPPFPV------VRLRGLPFDCTEVDVAEFFHGL--DIVDVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS------PHRSIPRAKSHDEGKDSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 643
            S   P P+      V + G+PF   E DV +FFHGL  D V +L  H  +NN   G        P     AL+RNR  M +RYVEV  +  +++  A  +       G       P +++PR+KS    K S   +       + L+GLPF A    ++DFFK   + EDSI+I
Sbjct:  292 SSVKPLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYI 462          
BLAST of FC875653 vs. ExPASy Swiss-Prot
Match: HNRH1_MOUSE (Heterogeneous nuclear ribonucleoprotein H OS=Mus musculus GN=Hnrnph1 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.331e-11
Identity = 45/154 (29.22%), Postives = 74/154 (48.05%), Query Frame = 2
Query:  206 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN 652
            VV++RGLP+ C+  +V  FF    I +    + F++ +  + +GEAF  L    +V  AL+++R+ MG RYVEVF+S   E    +                   K          + G +RLRGLPF   K++I+ FF    +  + I + ++
Sbjct:   12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVL-------------------KHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVD 146          
BLAST of FC875653 vs. ExPASy Swiss-Prot
Match: HNRH1_HUMAN (Heterogeneous nuclear ribonucleoprotein H OS=Homo sapiens GN=HNRNPH1 PE=1 SV=4)

HSP 1 Score: 68.5514 bits (166), Expect = 3.331e-11
Identity = 45/154 (29.22%), Postives = 74/154 (48.05%), Query Frame = 2
Query:  206 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN 652
            VV++RGLP+ C+  +V  FF    I +    + F++ +  + +GEAF  L    +V  AL+++R+ MG RYVEVF+S   E    +                   K          + G +RLRGLPF   K++I+ FF    +  + I + ++
Sbjct:   12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVL-------------------KHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVD 146          
BLAST of FC875653 vs. ExPASy Swiss-Prot
Match: ESRP1_XENTR (Epithelial splicing regulatory protein 1 OS=Xenopus tropicalis GN=esrp1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.331e-11
Identity = 42/137 (30.66%), Postives = 75/137 (54.74%), Query Frame = 2
Query:  206 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 607
            ++R RGLP+  ++ D+A FF GL+I      L ++   +  GEA          D ALQR++ +MG RY+EV+++  +++ K        + GG+ +       +    K++ V   I+R+RGLPF+A  ++++ FF
Sbjct:  227 IIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGNRYIEVYKATGEDFLK--------IAGGTSNE-----VAQFLSKENQV---IVRMRGLPFTATAEEVLAFF 347          
BLAST of FC875653 vs. ExPASy Swiss-Prot
Match: ESRP1_XENLA (Epithelial splicing regulatory protein 1 OS=Xenopus laevis GN=esrp1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.331e-11
Identity = 42/137 (30.66%), Postives = 75/137 (54.74%), Query Frame = 2
Query:  206 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 607
            ++R RGLP+  ++ D+A FF GL+I      L ++   +  GEA          D ALQR++ +MG RY+EV+++  +++ K        + GG+ +       +    K++ V   I+R+RGLPF+A  ++++ FF
Sbjct:  227 IIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGNRYIEVYKATGEDFLK--------IAGGTSNE-----VAQFLSKENQV---IVRMRGLPFTATAEEVLAFF 347          
The following BLAST results are available for this feature:
BLAST of FC875653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
HNRPF_BOVIN3.935e-1232.47Heterogeneous nuclear ribonucleoprotein F OS=Bos t... [more]
ESRP2_CHICK5.140e-1232.35Epithelial splicing regulatory protein 2 OS=Gallus... [more]
SYM2_CAEEL6.712e-1230.07RNA-binding protein sym-2 OS=Caenorhabditis elegan... [more]
RBM12_PONAB3.331e-1133.33RNA-binding protein 12 OS=Pongo abelii GN=RBM12 PE... [more]
RBM12_MACMU3.331e-1133.33RNA-binding protein 12 OS=Macaca mulatta GN=RBM12 ... [more]
RBM12_HUMAN3.331e-1133.33RNA-binding protein 12 OS=Homo sapiens GN=RBM12 PE... [more]
HNRH1_MOUSE3.331e-1129.22Heterogeneous nuclear ribonucleoprotein H OS=Mus m... [more]
HNRH1_HUMAN3.331e-1129.22Heterogeneous nuclear ribonucleoprotein H OS=Homo ... [more]
ESRP1_XENTR3.331e-1130.66Epithelial splicing regulatory protein 1 OS=Xenopu... [more]
ESRP1_XENLA3.331e-1130.66Epithelial splicing regulatory protein 1 OS=Xenopu... [more]

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Properties
Property NameValue
Genbank descriptionC31401D01EF CTVClemen1 Citrus clementina cDNA clone C31401D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875653 ID=FC875653; Name=FC875653; organism=Citrus clementina; type=EST; length=653bp
ATAGCTCACGNGCTCAACTATTTCAAATTTAAGAATGTTCTACAGAGGCA
AGTTTGCTGAGGGTGCTGATGGGCGTGAAATGGGGGCAAAGCGTCAACGG
TTGATTGATCAGGGACCTTCATTTTATGGAACTCCCCCAAGTTCAAGTTT
TATGTACAATCCACCACCAGCTTATGGGTACGTTAGCCAACCTCCACCTT
TCCCAGTTGTCCGACTTCGCGGTCTTCCCTTTGATTGTACAGAAGTTGAT
GTTGCTGAGTTTTTCCATGGTCTAGACATAGTCGATGTTCTTTTTGTCCA
TAAGAACAACAAATTTACAGGAGAAGCTTTTTGTGTGCTGGGGTATCCTC
TTCAAGTCGATTTTGCCCTGCAGAGGAATAGGCAGAACATGGGAAGGAGG
TATGTTGAGGTTTTCAGAAGTAAGAGGCAGGAATATTATAAGGCAATAGC
AAATGAAGTTTCTGATGTTCGTGGTGGTTCACCACATAGGAGTATCCCTA
GGGCTAAATCTCATGATGAGGGGAAGGATTCAGCTGTACATACAGGGATA
CTGCGATTGAGAGGATTGCCATTTTCAGCAGGCAAGGATGACATAATGGA
TTTCTTTAAAGATTTTGTGTTGTCGGAAGACTCGATTCATATTACTATGA
ATT
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